TCONS_00064666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064666
Unique NameTCONS_00064666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064666 ID=TCONS_00064666|Name=TCONS_00064666|organism=Clytia hemisphaerica|type=transcript|length=1469bp
AGAAAATTCTAAAGATACGAAAAGATGGAGGATCAGTTTCCTATTATTGA
TATTTCAAAACTGGTTGCAAGCCAAGGTAAAGATGAAACCATTCTCAAGG
AAACTGCCAATGAACTcatggatggattctcaaaatggGGTTTCATTTAT
TTGAAAGGACACCCAATAACTGAAGAATCAATCGAGAAAATGTTTCGAGA
TTCAGAAGCATTCTTCAAACAACCtgtggaaaagaaaaatgaagttttga
TCGATAGCAGTGATACAGATTACATCATTGGATATGTACCATTCAAAAAG
GAGACCTTTGATGCATCCAAACCGTTCGATTTGAAGGAAGCATTCGACTA
TATGCACCACATGCGCCCAGAAATGAAATCAAAAGTATCACCTGAATTTT
TCGAgctttttaagaacttttttacgCAATGTCATGATTTGACGTTCTTG
ATTTTTCGGTTGTTGGCAATATCGTTGGATCTTGAAGACTTGGAGTTCTT
TCACAAGGCTCATGATAAGTTGGGACGGTTAGGAAACACAACTCTTCTAC
GATCGCTTTATTATCCAGCTGTGGAGCGATCGGATATCTTAGAGGAACAA
AGCAGATGTGCTGAGCATACTGACTATGGCACAGTCACTCTTCTCTTTCA
AAATTCTGGTGGTCTAGAggtCAAGTCACCATCAGGAGATTTCATCAAAG
CTAAAGTAATTCCTGGTACCATAGTTGTCAACGCTGCAGATTTGATGGAG
CGATGGGCTAGCGGAAGAATCAAATCGACACCACATCGAGTCACTATCCA
AACAGATATGTCGAAACCAAGACAATGTTTGGCTTTCTTTGTATCACCAG
ATAATGATTATCTGGTCGAATGTGTGGATGGGTCTGATAAGTATGAACCA
ATCAACTCTTATGATTATTTGGATAGACGTTTCAAAGAGACTTTAAGCAA
AAATTGATCGCTTTGAAGTCATCTATAATGTcggtcgaaatatattggga
attttggttaattcctcctTTTAGctatttaaagttcgggcgagaaagtg
gtttttgggctaattgatattCGAATAGTTCAATTCGGGAGAAGTTTATA
GACTTGCAGGCTATATtttgagccctattggaccattcttggacttttgA
ATCCTCATATCCTAAGCTctttaagtcttaagtctagcgttaaaactcag
actTAAAACTTTACCCGTCCAACATAATTTAGaacgcttccaaatcgttt
gtggttgtaagatttcgtgggaatttcccttttttctcaaaaccttgATT
GTATTTCTTTGCAAAATTTGCAATCTTATAACTACAACATAAATTTAAAA
TTCCATAGGCTatagaaataattttaaataaaaacataaaatacatCAAC
TGAATGattggtcagccccggtgacccttcaaatctctttcacgattttt
ttcttcgtttaaGACTCAA
Run BLAST on NCBI

protein sequence of TCONS_00064666-protein

>TCONS_00064666-protein ID=TCONS_00064666-protein|Name=TCONS_00064666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MEDQFPIIDISKLVASQGKDETILKETANELMDGFSKWGFIYLKGHPITE
ESIEKMFRDSEAFFKQPVEKKNEVLIDSSDTDYIIGYVPFKKETFDASKP
FDLKEAFDYMHHMRPEMKSKVSPEFFELFKNFFTQCHDLTFLIFRLLAIS
LDLEDLEFFHKAHDKLGRLGNTTLLRSLYYPAVERSDILEEQSRCAEHTD
YGTVTLLFQNSGGLEVKSPSGDFIKAKVIPGTIVVNAADLMERWASGRIK
STPHRVTIQTDMSKPRQCLAFFVSPDNDYLVECVDGSDKYEPINSYDYLD
RRFKETLSKN
Run BLAST on NCBI

transcript from alignment at scaffold_420:226401..228702-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064666 ID=TCONS_00064666|Name=TCONS_00064666|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at scaffold_420:226401..228702- (Clytia hemisphaerica)
AGAAAATTCTAAAGATACGAAAAGATGGAGGATCAGTTTCCTATTATTGA
TATTTCAAAACTGGTTGCAAGCCAAGGTAAAGATGAAACCATTCTCAAGG
AAACTGCCAATGAACTCATGGATGGATTCTCAAAATGGGGTTTCATTTAT
TTGAAAGGACACCCAATAACTGAAGAATCAATCGAGAAAATGTTTCGAGA
TTCAGAAGCATTCTTCAAACAACCTGTGGAAAAGAAAAATGAAGTTTTGA
TCGATAGCAGTGATACAGATTACATCATTGGATATGTACCATTCAAAAAG
GAGACCTTTGATGCATCCAAACCGTTCGATTTGAAGGAAGCATTCGACTA
TATGCACCACATGCGCCCAGAAATGAAATCAAAAGTATCACCTGAATTTT
TCGAGCTTTTTAAGAACTTTTTTACGCAATGTCATGATTTGACGTTCTTG
ATTTTTCGGTTGTTGGCAATATCGTTGGATCTTGAAGACTTGGAGTTCTT
TCACAAGGCTCATGATAAGTTGGGACGGTTAGGAAACACAACTCTTCTAC
GATCGCTTTATTATCCAGCTGTGGAGCGATCGGATATCTTAGAGGAACAA
AGCAGATGTGCTGAGCATACTGACTATGGCACAGTCACTCTTCTCTTTCA
AAATTCTGGTGGTCTAGAGGTAAAATTTGTTTAAAACTTCTGTTTTTATA
ATTTAGAGATCAGATAGATACCTCTTTAGGCGTAAAAAGATGAAAAATAG
ACCGTCCATAAAAAAAGACCTTATCTGTGGATTAATGATAAGAGCAGTGA
AACTAATCATTGCAAGAAATGCGAGCCACCGGCTGATAATTTACTTTCAA
TCTCCAATAACAAATCTGGGAATAAGATCTTCACCGGGAGGCTATATATA
TTGAGTATTATACCATGTCACATTGTCTAAAGCANGCAGTGAAACTAATC
ATTGCAAGAAATGCGAGCCACCGGCTGATAATTAACTTTCAATCTCCAAT
AACAAATCTGGGAATAAGATCTTCACCGGGAGGCTATATATATTGAGTAT
TATACCATGTCACATTGTCTAAAGCATTTACACCAAAAAATGTCGACTTG
TATCGGAGAAGATAGGTTTTTATATAGCGTGGTTAAAACTCATGAAGGTC
CCGGGGGGGGGTACTACCCTTGTCGACCGACGGAGGTGCTCCGCTGAGGT
TCGAAAAATGGACCCTACGTGGGACTGAAATTCCAAAATTTTCTCAAATT
TTCTACTTTTTCCCTAAATTTTCCAAAAATAGGCACCCTACGAGGGACCG
ATTTTTCTATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTT
AAAAAAGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATTTTGCCCTA
GTATGAAGGTACATTTCTTCAAAGTGAATCGTTGTGTTGAAACAGCTGTC
TTGATTTGATTATGCTTAGTAGCCATTACATTGTAATCATTTTTGTTTTT
AGGTCAAGTCACCATCAGGAGATTTCATCAAAGCTAAAGTAATTCCTGGT
ACCATAGTTGTCAACGCTGCAGATTTGATGGAGCGATGGGCTAGCGGAAG
AATCAAATCGACACCACATCGAGTCACTATCCAAACAGATATGTCGAAAC
CAAGACAATGTTTGGCTTTCTTTGTATCACCAGATAATGATTATCTGGTC
GAATGTGTGGATGGGTCTGATAAGTATGAACCAATCAACTCTTATGATTA
TTTGGATAGACGTTTCAAAGAGACTTTAAGCAAAAATTGATCGCTTTGAA
GTCATCTATAATGTCGGTCGAAATATATTGGGAATTTTGGTTAATTCCTC
CTTTTAGCTATTTAAAGTTCGGGCGAGAAAGTGGTTTTTGGGCTAATTGA
TATTCGAATAGTTCAATTCGGGAGAAGTTTATAGACTTGCAGGCTATATT
TTGAGCCCTATTGGACCATTCTTGGACTTTTGAATCCTCATATCCTAAGC
TCTTTAAGTCTTAAGTCTAGCGTTAAAACTCAGACTTAAAACTTTACCCG
TCCAACATAATTTAGAACGCTTCCAAATCGTTTGTGGTTGTAAGATTTCG
TGGGAATTTCCCTTTTTTCTCAAAACCTTGATTGTATTTCTTTGCAAAAT
TTGCAATCTTATAACTACAACATAAATTTAAAATTCCATAGGCTATAGAA
ATAATTTTAAATAAAAACATAAAATACATCAACTGAATGATTGGTCAGCC
CCGGTGACCCTTCAAATCTCTTTCACGATTTTTTTCTTCGTTTAAGACTC
AA

Coding sequence (CDS) from alignment at scaffold_420:226401..228702-

>TCONS_00064666 ID=TCONS_00064666|Name=TCONS_00064666|organism=Clytia hemisphaerica|type=CDS|length=1866bp|location=Sequence derived from alignment at scaffold_420:226401..228702- (Clytia hemisphaerica)
GTCAAGTCACCATCAGGAGATTTCATCAAAGCTAAAGTAATTCCTGGTAC
CATAGTTGTCAACGCTGCAGATTTGATGGAGCGATGGGCTAGCGGAAGAA
TCAAATCGACACCACATCGAGTCACTATCCAAACAGATATGTCGAAACCA
AGACAATGTTTGGCTTTCTTTGTATCACCAGATAATGATTATCTGGTCGA
ATGTGTGGATGGGTCTGATAAGTATGAACCAATCAACTCTTATGATTATT
TGGATAGACGTTTCAAAGAGACTTTAAGCAAAAATTGAATGGAGGATCAG
TTTCCTATTATTGATATTTCAAAACTGGTTGCAAGCCAAGGTAAAGATGA
AACCATTCTCAAGGAAACTGCCAATGAACTCATGGATGGATTCTCAAAAT
GGGGTTTCATTTATTTGAAAGGACACCCAATAACTGAAGAATCAATCGAG
AAAATGTTTCGAGATTCAGAAGCATTCTTCAAACAACCTGTGGAAAAGAA
AAATGAAGTTTTGATCGATAGCAGTGATACAGATTACATCATTGGATATG
TACCATTCAAAAAGGAGACCTTTGATGCATCCAAACCGTTCGATTTGAAG
GAAGCATTCGACTATATGCACCACATGCGCCCAGAAATGAAATCAAAAGT
ATCACCTGAATTTTTCGAGCTTTTTAAGAACTTTTTTACGCAATGTCATG
ATTTGACGTTCTTGATTTTTCGGTTGTTGGCAATATCGTTGGATCTTGAA
GACTTGGAGTTCTTTCACAAGGCTCATGATAAGTTGGGACGGTTAGGAAA
CACAACTCTTCTACGATCGCTTTATTATCCAGCTGTGGAGCGATCGGATA
TCTTAGAGGAACAAAGCAGATGTGCTGAGCATACTGACTATGGCACAGTC
ACTCTTCTCTTTCAAAATTCTGGTGGTCTAGAGGTCAAGTCACCATCAGG
AGATTTCATCAAAGCTAAAGTAATTCCTGGTACCATAGTTGTCAACGCTG
CAGATTTGATGGAGCGATGGGCTAGCGGAAGAATCAAATCGACACCACAT
CGAGTCACTATCCAAACAGATATGTCGAAACCAAGACAATGTTTGGCTTT
CTTTGTATCACCAGATAATGATTATCTGGTCGAATGTGTGGATGGGTCTG
ATAAGTATGAACCAATCAACTCTTATGATTATTTGGATAGACGTTTCAAA
GAGACTTTAAGCAAAAATTGAATGGAGGATCAGTTTCCTATTATTGATAT
TTCAAAACTGGTTGCAAGCCAAGGTAAAGATGAAACCATTCTCAAGGAAA
CTGCCAATGAACTCATGGATGGATTCTCAAAATGGGGTTTCATTTATTTG
AAAGGACACCCAATAACTGAAGAATCAATCGAGAAAATGTTTCGAGATTC
AGAAGCATTCTTCAAACAACCTGTGGAAAAGAAAAATGAAGTTTTGATCG
ATAGCAGTGATACAGATTACATCATTGGATATGTACCATTCAAAAAGGAG
ACCTTTGATGCATCCAAACCGTTCGATTTGAAGGAAGCATTCGACTATAT
GCACCACATGCGCCCAGAAATGAAATCAAAAGTATCACCTGAATTTTTCG
AGCTTTTTAAGAACTTTTTTACGCAATGTCATGATTTGACGTTCTTGATT
TTTCGGTTGTTGGCAATATCGTTGGATCTTGAAGACTTGGAGTTCTTTCA
CAAGGCTCATGATAAGTTGGGACGGTTAGGAAACACAACTCTTCTACGAT
CGCTTTATTATCCAGCTGTGGAGCGATCGGATATCTTAGAGGAACAAAGC
AGATGTGCTGAGCATACTGACTATGGCACAGTCACTCTTCTCTTTCAAAA
TTCTGGTGGTCTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040559XLOC_040559Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064666-proteinTCONS_00064666-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064666-exon-scaffold_420-1575043694:228034..228702TCONS_00064666-exon-scaffold_420-1575043694:228034..228702Clytia hemisphaericaexon
TCONS_00064666-exon-scaffold_420-1575043694:226401..227200TCONS_00064666-exon-scaffold_420-1575043694:226401..227200Clytia hemisphaericaexon
TCONS_00064666-exon-scaffold_420-1510915933:228034..228702TCONS_00064666-exon-scaffold_420-1510915933:228034..228702Clytia hemisphaericaexon
TCONS_00064666-exon-scaffold_420-1510915933:226401..227200TCONS_00064666-exon-scaffold_420-1510915933:226401..227200Clytia hemisphaericaexon
TCONS_00064666-exon-scaffold_420-1491911889:228034..228702TCONS_00064666-exon-scaffold_420-1491911889:228034..228702Clytia hemisphaericaexon
TCONS_00064666-exon-scaffold_420-1491911889:226401..227200TCONS_00064666-exon-scaffold_420-1491911889:226401..227200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:226401..228702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.27814	6.72583	6.31121	5.20573	1.7087	1.28984	9.73785	10.3026	11.5552	13.2226	11.3536	12.1115	14.4932	12.388	14.7094	18.4268	9.61542	10.6809	7.51279	7.56835	13.748	11.2306	9.87896	12.1807	9.15995	11.008	20.6943	20.6403	14.8637	11.1628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027443IPNS-like
IPR026992DIOX_N
IPR005123Oxoglu/Fe-dep_dioxygenase
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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