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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065365 ID=TCONS_00065365|Name=TCONS_00065365|organism=Clytia hemisphaerica|type=transcript|length=1163bp
AATTAATACAAAAACACTTTAATATGaatgaaaaatatgatattactcaa
ttaacaattattttcagtaaaagaaaagaacaaaattgATTTCATGACAA
ACCTATagcaaaacgttttttttactGTGGCAAACAAAGTCTGCTttgct
tttaaattttatgcgaTCCTTCAAAACCTTACAGAAAGAAGCGTAGAATC
TTTCAGTGCAAGGCATCAAGTGGAAGTTCACAATGccGCCAAAATCCAAG
AAGGTCAAGGTTAAGAAGCCTCAAGCTGCCCCTTTCACCACCAAGGGTGC
AAAAACCACCAAGAAAACTTCCAATGTTTTAATTGAAAAACGTCCAAGAA
ACTTTGGAATCGGTGGTGACATCCAACCAAAGAGAGACTTGGGACGTTTT
GTCCTATGGCCAAAATACATTAAATTGCAGAGGCAGAAGCGTATTTTGTA
CCAGCGTTTGAAGGTTCCACCAAGCATCAATCAATTTACTCAAACTTTGG
ATCAGCAAACAGCAACAcaacttttcaaacttcttCACAAGTACAGACCA
GAAACAAAAGCTGAGAAGAAAGCCAGATTAACAGCTCAGGCCGAAAGCAA
AGCTGCTGGTAAACAAGAAACTGCTGGAAAGAAACCNACACCAGCTTTAA
TCTATTGATCGAAACCACAAGCACACCGCAAATTTACTATTTgcttgaat
aaaagaagaattttgtgAATGAGTTCTATGGGGAGGGGTACTAAGACaag
tacgggtatgtgccgcccttaagggtgccttttttggacctTCGAAGGGC
GGGtcgtaaaaatcacaaaatctaatttcagtcccccTAAGCAAGCCTTG
TAAAACAGCCAAAAGTTCCAATAAGAGTCACGAAATCccgaaaaatcagt
tttttcctCGATTTTTGCAGCACATACCCGttagctcgcaaccctagtta
CCCCGGATAGTCTGTGAAATGATTGATTCAAGAATCGTTGgtgattcatt
caaaatttttacagcgAAGGGGGCCATGACTCTTGTCATGTCACTTACAG
TATTCCTTAATGGAATAGGGAGGaaatattaattttgaaatagctttatc
tCATCACTTACCTACtgtatttttttagatttacaCAGCATTTATGCTGT
AAGATTTTTGAAG Run BLAST on NCBI protein sequence of TCONS_00065365-protein >TCONS_00065365-protein ID=TCONS_00065365-protein|Name=TCONS_00065365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MPPKSKKVKVKKPQAAPFTTKGAKTTKKTSNVLIEKRPRNFGIGGDIQPK
RDLGRFVLWPKYIKLQRQKRILYQRLKVPPSINQFTQTLDQQTATQLFKL
LHKYRPETKAEKKARLTAQAESKAAGKQETAGKKXTPALIY Run BLAST on NCBI transcript from alignment at scaffold_439:518916..524076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065365 ID=TCONS_00065365|Name=TCONS_00065365|organism=Clytia hemisphaerica|type=transcript|length=5161bp|location=Sequence derived from alignment at scaffold_439:518916..524076+ (Clytia hemisphaerica)
AATTAATACAAAAACACTTTAATATGaatgaaaaatatgatattactcaa
ttaacaattattttcagtaaaagaaaagaacaaaattgATTTCATGACAA
ACCTATagcaaaacgttttttttactGTGGCAAACAAAGTCTGCTttgct
tttaaattttatgcgaTCCTTCAAAACCTTACAGAAAGAAGCGTAGAATC
TTTCAGTGCAAGGCATCAAGTGGAAGTTCACAATGGTAATAAAGCTTTGT
TATATTTCTTATCATATCTGGAGAATCCTAGTTGTTCACTGTTGATAACC
TATGGAGACTTGATACCTGTTTATACTACCTGGTGCTTAGTGCCGTAGTT
CATCGTGTTTGTTCTAAATTGTTTTGTACAGAGATGAGATTGAAACCTAG
TACAGTGCTACAATCATAGGTTTCAGATTTTTGGTGAATTTCGAAATCGG
CATATACTATGAGCTAACACAAGCAGTAATTATTGAACGAGAGTAATCAT
TCAATGTGCGAGCAGAATGTCTTACCTTACGAGAAGTGTTAATTGTGATT
caattttattcaatgattGATGTATTTGTTGATAGACCGCTTCCATTCCG
TATATGATGTCTCATTTTCACCCACGATCAGtcatttttctatgaaatgG
CAGAATTGATATGTACAGGACAATTTAGTAACACCTTGCATAACTCAAAA
GCTCTTAGTGTTCCTGTTCCTGTTTGTTTTGGGTGAAAATTAGTCAGTTA
CAGAGGGACAGGCAGCTTGCTTGAGATTTGGTTGAAGATAGTGTCTAAGG
CCAGGTCTAATTGAtagtttggttcgtgtcctccgaccgactctaagttt
ttgagaaagtgtttcactttgagtcagaaaaaccaaaataattttaccTC
CTTCTCACATGATAACTACTATCTCTGCGGTTCTTTTTTAACTGACTGCT
TTGATTCTTCTATAAACAACATCCACTTCCCGCACGGAAAATCTCCCGGT
GTAACCcttacttaaaaacaaatatttagcACCTAAAAGCAGAGAGTCAC
AGCTGTATTCCTTTAAGCACGCGTCGCGAACGCCTTCAACTCCAACTAGA
AGTTATCTTGCGATCGCAGCGCATGCCTTTGCAGATTCAGGCTTTAGTTT
ATTTCTTTACATTTGCGGTTGGATATCAGGATTGCACGATTGCTTAAGGA
ATTTCTAAAATTGAGGattttggtgggaaaatgaaaaaaggttcCAGTTT
TAGCTACCGACCAACcgacccatttttcaaagcttctaggacacaaacca
aacaatcaattgggcctggcctaaCTGGATTTCAGTGAATCAGTTTATTA
ATATGTCAGAATATGTACACATTTGGTTGTTGTACTTAGTATACTTACTT
TTGGATACTTTTGGATGTGTTTGAGCGTACCGCTCTGGCAAGAATCTTTT
GATCCACACCACAATCTTCATTCAATCCATAATTCCTGAAGGAAGAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATAATTCC
TGAAGGAAGAAATGGATCAGCAGAGAgatttcatgtctaaaattgAGTTT
GAGTCAACTCTCCTGCACCCTGTATAACCACGGATTTGGGGCTCATCGGG
AATTTTTTGTACTAAGTGTTTGTCAAGTgcatttttgaatttgtcaacag
tttaatttttcaagtttctaATGCTCTTTGGCATTGCATTGAAAAGTTTT
GCTCCTTGTATAGTCATGGTACTGTCGCGTAATTTTGAATTGTTTGGACC
GGCGTATTTGCTAAAACACATTCGTCCTAATCTTGGATGGTCTTTAGATT
TGAAGCAATCATTGATATTTGGCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAAGTACA
CTTCCTTGTGGTACACCTGAGATAACTTCTTGGTTGTTTGATTTCACACC
ATTAACCACTACAGTTTGTTGCCTGTCTCTCAAAAAGGACTCTATCCTAT
TATAGATTCTACCAGTTATTCCTagccttttgaattttgacagaACAATT
GAATGATCCACTTTATCGAAAGCTTTAGAAAAGTCTAAGTAAACAACATC
TACATTGGTCTCTAAGTAAGGCCCTCAAGTGGTAACTTTGAGCACAATTT
TGCACAGTTTTTTGTCTTTGATCATCAGCAAAAAATGGctaatcacgcat
ccctttcCAAATCACAAAATCATGCTACAAAAAGTTCCTATCACATAATC
ACACAAATTGCTTGGGGGGCCTCCTTAGTCAGTGGATCAAAGAAACTTGA
CTGTCAGTAGTTTAATTGAAACCTGCTCTTCAATTTGTCTATTcccatta
aaaatattttactagctggaatatattttttaaactgCAAAATGGTCTGC
TGAAAAGGGACTCAGTTATTGTCTAGTTGCTACAGGTTGTTATCTTGGCG
GTGGACAGATTATTTCACAGGTAGTGGAGATGAATTATTCAAACATATTT
CTGTGatagaaatattatttttcatgcTACAGGCTTTGCTGAATCTTAAC
TGGTAAAGTATTTCAATCGGAGTCACCTATATCAGTATTGTCATATCCTA
TATCATCATTAGAAACATTAGtcttttctaatatttttctaGTATAGAGA
AATGACTATGTTTGTTATCTAGTATCATTCTAATAAGGAAATGTGTGAAG
GTTGGGATTAATGGAAGGCATGACAGATATGTTCTCTCCAACAAAAATAG
TATATAATAGCTAAGTTGTATTTCAAActtgattttgaagattttgagcc
TTATGTACTGGAGATCAGTTAAAGCAACACTCGAAACACAATTTGTTAAT
CTATATTTAGAAACTCGCACTTATTTGATTGATACTGTCTGGGTATAATT
CAATGGTTTTACATTAAATTAAATAAGCTTTAAAAATCAACATGTAGTTT
CATTTATGTAtccttttttcacttttcagccGCCAAAATCCAAGAAGGTC
AAGGTTAAGAAGCCTCAAGCTGCCCCTTTCACCACCAAGGGTGCAAAAAC
CACCAAGAAAACTTCCAATGTTTTAATTGAAAAACGTCCAAGAAACTTTG
GAATCGGTATGCAACTGTTTGTACTCATTGTTTActtattcaaaaattta
tttcaggTATCTAATACAGAGCCTATTTATGATGATCAAGTTATGCTTac
agaaaaacaaacattgaccTTAAAGATAATGTTTGGCGATAAAAGGAAGG
GTAACAGCAAAAGGGTGGCACCTTCCTGTGATTGAGATATGTAAAAGCTA
CTTATTTACTCAAgcgaaatgaaagaaaagttGTCAAGAGATGTGACCTc
acattctattgcttttgtGCGATCTCAATAGCTTGTGTTCACATCGTTTT
TAGTTCATTAGAAACTTTTTCTTCAGTCCTTAGTGATTTTTTGCAATTGA
TTGATTTACACATTTTTAGGTGGTGACATCCAACCAAAGAGAGACTTGGG
ACGTTTTGTCCTATGGCCAAAATACATTAAATTGCAGAGGCAGAAGCGTA
TTTTGTACCAGCGTTTGAAGGTTCCACCAAGCATCAATCAATTTACTCAA
ACTTTGGATCAGCAAACAGGTAAATCTTTGCTAAGTGATTATTTCAATGC
TGTTTGCTGAAGGATTTAGCCATTTGTAAAGGCGTGTAGTGCTGAAACCT
ATGGGAATCCTTGTATCTTATGAGAATGAGttattcaaaatattgatttt
tgtgtTTCAGCAACAcaacttttcaaacttcttCACAAGTACAGACCAGA
AACAAAAGCTGAGAAGAAAGCCAGATTAACAGCTCAGGCCGAAAGCAAAG
CTGCTGGTAAACAAGAAACTGCTGGAAAGAAACCNACACCAGCTTTAATC
TATTGATCGAAACCACAAGCACACCGCAAATTTACTATTTgcttgaataa
aagaagaattttgtgAATGAGTTCTATGGGGAGGGGTACTAAGACaagta
cgggtatgtgccgcccttaagggtgccttttttggacctTCGAAGGGCGG
GtcgtaaaaatcacaaaatctaatttcagtcccccTAAGCAAGCCTTGTA
AAACAGCCAAAAGTTCCAATAAGAGTCACGAAATCccgaaaaatcagttt
tttcctCGATTTTTGCAGCACATACCCGttagctcgcaaccctagttaCC
CCGGATAGTCTGTGAAATGATTGATTCAAGAATCGTTGgtgattcattca
aaatttttacagcgAAGGGGGCCATGACTCTTGTCATGTCACTTACAGTA
TTCCTTAATGGAATAGGGAGGaaatattaattttgaaatagctttatctC
ATCACTTACCTACtgtatttttttagatttacaCAGCATTTATGCTGTAA
GATTTTTGAAG Coding sequence (CDS) from alignment at scaffold_439:518916..524076+ >TCONS_00065365 ID=TCONS_00065365|Name=TCONS_00065365|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_439:518916..524076+ (Clytia hemisphaerica)
ATGccGCCAAAATCCAAGAAGGTCAAGGTTAAGAAGCCTCAAGCTGCCCC
TTTCACCACCAAGGGTGCAAAAACCACCAAGAAAACTTCCAATGTTTTAA
TTGAAAAACGTCCAAGAAACTTTGGAATCGGTGGTGACATCCAACCAAAG
AGAGACTTGGGACGTTTTGTCCTATGGCCAAAATACATTAAATTGCAGAG
GCAGAAGCGTATTTTGTACCAGCGTTTGAAGGTTCCACCAAGCATCAATC
AATTTACTCAAACTTTGGATCAGCAAACAGCAACAcaacttttcaaactt
cttCACAAGTACAGACCAGAAACAAAAGCTGAGAAGAAAGCCAGATTAAC
AGCTCAGGCCGAAAGCAAAGCTGCTGGTAAACAAGAAACTGCTGGAAAGA
AACCNACACCAGCTTTAATCTATTGAATGccGCCAAAATCCAAGAAGGTC
AAGGTTAAGAAGCCTCAAGCTGCCCCTTTCACCACCAAGGGTGCAAAAAC
CACCAAGAAAACTTCCAATGTTTTAATTGAAAAACGTCCAAGAAACTTTG
GAATCGGTGGTGACATCCAACCAAAGAGAGACTTGGGACGTTTTGTCCTA
TGGCCAAAATACATTAAATTGCAGAGGCAGAAGCGTATTTTGTACCAGCG
TTTGAAGGTTCCACCAAGCATCAATCAATTTACTCAAACTTTGGATCAGC
AAACAGCAACAcaacttttcaaacttcttCACAAGTACAGACCAGAAACA
AAAGCTGAGAAGAAAGCCAGATTAACAGCTCAGGCCGAAAGCAAAGCTGC
TGGTAAACAAGAAACTGCTGGAAAGAAACCNACACCAGCTTTAATCTATT
GAATGccGCCAAAATCCAAGAAGGTCAAGGTTAAGAAGCCTCAAGCTGCC
CCTTTCACCACCAAGGGTGCAAAAACCACCAAGAAAACTTCCAATGTTTT
AATTGAAAAACGTCCAAGAAACTTTGGAATCGGTGGTGACATCCAACCAA
AGAGAGACTTGGGACGTTTTGTCCTATGGCCAAAATACATTAAATTGCAG
AGGCAGAAGCGTATTTTGTACCAGCGTTTGAAGGTTCCACCAAGCATCAA
TCAATTTACTCAAACTTTGGATCAGCAAACAGCAACAcaacttttcaaac
ttcttCACAAGTACAGACCAGAAACAAAAGCTGAGAAGAAAGCCAGATTA
ACAGCTCAGGCCGAAAGCAAAGCTGCTGGTAAACAAGAAACTGCTGGAAA
GAAACCNACACCAGCTTTAATCTATTGAATGccGCCAAAATCCAAGAAGG
TCAAGGTTAAGAAGCCTCAAGCTGCCCCTTTCACCACCAAGGGTGCAAAA
ACCACCAAGAAAACTTCCAATGTTTTAATTGAAAAACGTCCAAGAAACTT
TGGAATCGGTGGTGACATCCAACCAAAGAGAGACTTGGGACGTTTTGTCC
TATGGCCAAAATACATTAAATTGCAGAGGCAGAAGCGTATTTTGTACCAG
CGTTTGAAGGTTCCACCAAGCATCAATCAATTTACTCAAACTTTGGATCA
GCAAACAGCAACAcaacttttcaaacttcttCACAAGTACAGACCAGAAA
CAAAAGCTGAGAAGAAAGCCAGATTAACAGCTCAGGCCGAAAGCAAAGCT
GCTGGTAAACAAGAAACTGCTGGAAAGAAACCNACACCAGCTTTAATCTA
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065365-exon-scaffold_439-1491911889:518916..519150 | TCONS_00065365-exon-scaffold_439-1491911889:518916..519150 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1510915933:518916..519150 | TCONS_00065365-exon-scaffold_439-1510915933:518916..519150 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1575043694:518916..519150 | TCONS_00065365-exon-scaffold_439-1575043694:518916..519150 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1491911889:522645..522771 | TCONS_00065365-exon-scaffold_439-1491911889:522645..522771 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1510915933:522645..522771 | TCONS_00065365-exon-scaffold_439-1510915933:522645..522771 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1575043694:522645..522771 | TCONS_00065365-exon-scaffold_439-1575043694:522645..522771 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1491911889:523135..523284 | TCONS_00065365-exon-scaffold_439-1491911889:523135..523284 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1510915933:523135..523284 | TCONS_00065365-exon-scaffold_439-1510915933:523135..523284 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1575043694:523135..523284 | TCONS_00065365-exon-scaffold_439-1575043694:523135..523284 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1491911889:523426..524076 | TCONS_00065365-exon-scaffold_439-1491911889:523426..524076 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1510915933:523426..524076 | TCONS_00065365-exon-scaffold_439-1510915933:523426..524076 | Clytia hemisphaerica | exon |
| TCONS_00065365-exon-scaffold_439-1575043694:523426..524076 | TCONS_00065365-exon-scaffold_439-1575043694:523426..524076 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:518916..524076 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065365 vs. Swiss-Prot (Human)
Match: RL7A (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 2.812e-34 Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 2
Query: 323 NVLIEKRPRNFGIGGDIQPKRDLGRFVLWPKYIKLQRQKRILYQRLKVPPSINXXXXXXXXXXXXXXXKLLHKYRPETKAEKKARLTAQAESKAAGKQETAGKKP 637
N L EKRP+NFGIG DIQPKRDL RFV WP+YI+LQRQ+ ILY+RLKVPP+INQFTQ LD+QTATQL KL HKYRPETK EKK RL A+AE KAAGK + K+P
Sbjct: 29 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP 133
The following BLAST results are available for this feature:
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