TCONS_00066777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066777
Unique NameTCONS_00066777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066777 ID=TCONS_00066777|Name=TCONS_00066777|organism=Clytia hemisphaerica|type=transcript|length=334bp
TGCATGCGCAGTTCAATTTGTTGTACCAAGTTTGGATTCATACTGAGGTT
GTTCCAAAACTTGGTCCATTGGAATACATTTTTAACACGGCAAGTCACCA
TCGAGTTCATCATGGAAGGAATATATATTGTATCGATACAAACTACGGTG
GGACTTTGATAATATGGGACAGAATTCTGGGGACATTTGCTGAAGAAGAA
GAGAAAGTATCATATGGATTAGTTTATCCAGAATATACAGCGAACCCACT
TTTGCTACAGCTCAATTGCTTGTTCCGTAAACCTTGTTGGATGGCAGAAA
GTGAAAAAGTTGGATTAACTCCAGAACAAATGGA
Run BLAST on NCBI

transcript from alignment at scaffold_46:44595..46741-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066777 ID=TCONS_00066777|Name=TCONS_00066777|organism=Clytia hemisphaerica|type=transcript|length=2147bp|location=Sequence derived from alignment at scaffold_46:44595..46741- (Clytia hemisphaerica)
TGCATGCGCAGTTCAATTTGTTGTACCAAGTTTGGATTCATACTGAGGTA
AATAGTAAAGAACTACACCTAAATGTGCAGAGAGCCGGCATCAAAAGTTA
CAAATAACTCTAAGTTTCTCAAAGGGGTGTAGTTTTCTAAGTCGGTACGA
AAGGCGCAGGTCATTTTGGAAGTTTTTTATGAAAAAAAAAACAGTTGGTC
TAAAGTTTTATAGCAGAAAAAAAGAAAAAAAGCTGATATCACGGTCATCA
AAAACCTTGAACCCCTTCAACTATTTATCTTATTGATAGAGACTTCTTTG
ATATAAAGTTATGAGACGATTATTTTCGTAGTTTTTGCCGACGAATATTC
TTTCATCACAAATTTTCTACAAATAATGTACCTATTACTTAATCATATTT
AATCGAAACTGAATATGAAGATTTAAATAACTAGCTATGTGTTCTTCTCT
AACAGGTTGTTCCAAAACTTGGTCCATTGGAATACATTTTTAACACGGCA
AGTCACCATCGAGTTCATCATGGTATGTAGACGGGAAACTTAATTTGAAT
ACTACTCTACCAGGAATATTACCCTGGTCCAATTAATTAAGGGAATTACT
ACANCTACTCTACCAGGAATATTACCATGGTCCAATTAATTAAGGGAATT
ACTACACTCTACAATACCCACTGTAATACTTGGCACAAAAGGGGAATTCC
CTCAAATTTGAAAACCGCAAGTGATTTTTAAGTGCTTTATAAAGTACGGT
TGGAAAGTAGAGTTTTAATTCTGAGTTTTAGCATGAAGACTTACGACCTT
AGGATCTCAAAGCTCAAAAATGTTCCTGAGAATGTAGCCTGGAATCCACT
TAACCCCTCCCAAATCGAAAGATCCAAAGCAACAAAGTGCCAATAACATT
TCGGCGCCGATAGTTAAAAGAAACATTCTTAACTAAAGATTTAAGTTTTT
CCTCATTTACGCTAATTTTAACACCAGAAACCTAACCTTTTTAATTGTAA
ACTTTTTTTCTTCCAGGAAGGAATATATATTGTATCGATACAAACTACGG
TTAGTCATAGTTGTATGTTAAAATCTGAATCTTAGGCTTGCGATTAAATC
GAAGAAAAGATTTGTTTTGAGCTCCAATCATGGATCATACATCATCCACC
TAAATTTTGGTGTGCGTGTATGCTCAGAAGAATTATAATTCTTGTCTTCA
TCCGGTAAATACTTTGTCTTTTCATTTATAGGTGGGACTTTGATAATATG
GGACAGAATTCTGGGTAAGTAACTTTTTATCTTATTGACCATTTGAATTA
TGAAAGATTTAGGGTTATAAATACTTTTTTATAAAAGTTTTACATAGGAC
CACAGGAACATTGTTCTAGTGAAGGAGAGATTCGAATTCGAGTTTAAAAG
ACTTCACTGTACTCTATTCGATATAGGGACATTTGCTGAAGAAGAAGAGA
AAGTATCATATGGATTAGTTTATCCAGAATATACAGCGAACCCACTTTTG
CTACAGGTAGCCCAACTAGCCATACACCCTTTACTTCAACATATAATAAA
CGTGTCTTTTACATTTCCAAGTGAAGAGTAAAATTTCAAGCCAAGCATCA
CAAAATCACGAAATTTCCTCTAAAAACTTTATTGAGCTTGATTGACATTG
CTTGAGATTCATCCCCTCGTGCTCTCGTCCCCTCGTACTCCCTCTTATTG
GCAAGTATTTTTATGACTTTCAGTTAAAAACATCACCTGCCTTTTACAGG
GTGGCCATTTTTATTATCTCTATCGACGATTTTGTAAATTGGAAAAATGG
TCTGACAAGGTAAGCTTTGGACAGGACCCTAACATTTCTTGATATTTCAA
CATTGGGTTAGTAAGATAGAGAAGGGTTTCCATTTTTTTTCAATCGAGAA
CTTAGTAAGATTAGAAATCTGTGTCTAAAACTTTTTGAATAACTGTTTTT
CTGGTAGTTTTGAGACCCATAAGGAAGCTATCTACAAAATTTCAGTCACA
TTATATTAATATTAAGGTGTGGGCCTTTTTTGAGATAATTCTACTAGTCT
TTTCGATTTCATTCAACTATCAGCTCAATTGCTTGTTCCGTAAACCTTGT
TGGATGGCAGAAAGTGAAAAAGTTGGATTAACTCCAGAACAAATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041760XLOC_041760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066777-exon-scaffold_46-1575043694:46695..46741TCONS_00066777-exon-scaffold_46-1575043694:46695..46741Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1575043694:46220..46286TCONS_00066777-exon-scaffold_46-1575043694:46220..46286Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1575043694:45693..45725TCONS_00066777-exon-scaffold_46-1575043694:45693..45725Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1575043694:45478..45510TCONS_00066777-exon-scaffold_46-1575043694:45478..45510Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1575043694:45236..45315TCONS_00066777-exon-scaffold_46-1575043694:45236..45315Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1575043694:44595..44668TCONS_00066777-exon-scaffold_46-1575043694:44595..44668Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:46695..46741TCONS_00066777-exon-scaffold_46-1510915933:46695..46741Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:46220..46286TCONS_00066777-exon-scaffold_46-1510915933:46220..46286Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:45693..45725TCONS_00066777-exon-scaffold_46-1510915933:45693..45725Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:45478..45510TCONS_00066777-exon-scaffold_46-1510915933:45478..45510Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:45236..45315TCONS_00066777-exon-scaffold_46-1510915933:45236..45315Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1510915933:44595..44668TCONS_00066777-exon-scaffold_46-1510915933:44595..44668Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:46695..46741TCONS_00066777-exon-scaffold_46-1491911889:46695..46741Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:46220..46286TCONS_00066777-exon-scaffold_46-1491911889:46220..46286Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:45693..45725TCONS_00066777-exon-scaffold_46-1491911889:45693..45725Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:45478..45510TCONS_00066777-exon-scaffold_46-1491911889:45478..45510Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:45236..45315TCONS_00066777-exon-scaffold_46-1491911889:45236..45315Clytia hemisphaericaexon
TCONS_00066777-exon-scaffold_46-1491911889:44595..44668TCONS_00066777-exon-scaffold_46-1491911889:44595..44668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:44595..46741 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0912058	0	0	0	0.364892	0	0.0750624	0	1.02544	0	1.29446	2.81756	1.27635	1.94789	4.23688	0.24926	1.49195	0.327698	0.216735	0	0.603991	0	1.14479	0	0.457543	0	0	0
Blast
[Close]
BLAST of TCONS_00066777 vs. Swiss-Prot (Human)
Match: ALKMO (Alkylglycerol monooxygenase OS=Homo sapiens GN=AGMO PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.170e-36
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 3 
Query:    3 HAQFNLLYQVWIHTEVVPKLGPLEYIFNTASHHRVHHGRNIYCIDTNYGGTLIIWDRILGTFAEEEEKVSYGLVYPEYTANPLLLQLNCLF 275
            H QFNLLYQ WIHTEV+  LGPLE I NT SHHRVHHGRN YCID NY G LIIWD+I GTF  E EKV YGL +P  T  P+ +Q + LF
Sbjct:  189 HLQFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVLIIWDKIFGTFEAENEKVVYGLTHPINTFEPIKVQFHHLF 279
The following BLAST results are available for this feature:
BLAST of TCONS_00066777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALKMO1.170e-3667.03Alkylglycerol monooxygenase OS=Homo sapiens GN=AGM... [more]
back to top