TCONS_00068976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068976
Unique NameTCONS_00068976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068976 ID=TCONS_00068976|Name=TCONS_00068976|organism=Clytia hemisphaerica|type=transcript|length=657bp
TGCGAACGTTAGATaagcgttgaaacaacgttgtgtgccaactgggaaAG
GTCTTTGATTGTAGAGAAATCTAATACTTCAAAAGCACTCTACTAAACGA
ATGTGCGTGTtagagttttagaaaaaaaaacctcAATCTGCTTTACAGTA
GTTGGAGTTTTGTGTTTATtcgattttttcaattctttctaATTCTGTCT
ACTTCTAGGGCTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCACAG
GATGGAAAATCACTGGCCTTACcacaatcaaaataaaagGAATGAAATAC
AATGTCAACGTGGCACATGCACTTGGAACACCCGGCTGGAAATTCATTtt
acaaattccaaaaatgtttgtaaaagattttcacaACTTTGTTACTGGTA
ATGAGGATGCAGATTTAGACACTGGGACTGCCCTTGATTCGTTTGGAATT
CAAGATTTGAGATTCGAGTATAATATCAATCGGGTAGTATCAAACGATGA
TAAAGGGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAAACCG
ATTTTGGTGATGTCAAGTAAGTCATTCAATTCAGAGAGCAAAGACTTTGC
TCTGACGGATTGAACAGTTGAACTGGATTGAATTTagctttttctttgct
ttgcgTT
Run BLAST on NCBI

transcript from alignment at scaffold_491:173748..179956+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068976 ID=TCONS_00068976|Name=TCONS_00068976|organism=Clytia hemisphaerica|type=transcript|length=6209bp|location=Sequence derived from alignment at scaffold_491:173748..179956+ (Clytia hemisphaerica)
TGCGAACGTTAGATaagcgttgaaacaacgttgtgtgccaactgggaaAG
GTCTTTGATTGTAGAGAAATCTAATACTTCAAAAGCACTCTACTAAACGA
ATGTGCGTGTtagagttttagaaaaaaaaacctcAATCTGCTTTACAGTA
GTTGGAGTTTTGTGTTTATtcgattttttcaattctttctaATTCTGTCT
ACTTCTAGGGCTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCACAG
GATGGAAAATCACTGGCCTTACcacaatcaaaataaaaggtttGCTCACA
TTAATAACCCTTAAATATGTTAgtactagccataattttcattaaagtgc
cacagcagaagaacgatcaaataagttgttgaatttggaaagaaatgtta
ctgatgaggcccccccagcgacaccgctaatcacgccatcacgcaaaaaa
attttctccatcacgcatcacgaaaatcgctaaaatttgtcatcacgcaa
aaaatagcgaaaaatagcccaaatcaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgaaaaatatatattccattaat
taacaaaatacttgaagaattcatgcagcttgataatttaataaaattta
aggaaaagctgggaaagcttctcaaaaatatatttcaaaagttatggtat
CATCAGCTCACTGGTTTTCACATctcttctttgctttttttctcctagtt
tctttcttacaacaatatatgtcatgattattattcactaaatagacctt
tcctgataatgctgcagacatcttagattgtaggcaaaatatatagcgga
tactgcgtataaaatttatcaaaaggttctgcgccatcttaaattgggtg
aaatagaaactaatcctagttaaggcccgggctccattTGCGTACGCCGT
GATtacacttctcaagcaaaatcttctatgttgtttgtcaaaagaaaaat
aaagaaatgccattgtggtccctTCAGATGTatagtcgagaaaagttgaa
atgcgcctaaattttttttcaagtgcatagtactttttaatgatgcaatc
ttttctccaaactgaaaggattgaagccattaagatgatcacagcgcaga
caatgaagacaCGTGTGCCTTCagaggaagctagactttttgaggtTATT
GCTATATAcattcactttatggtgtttctgtatgactgtctgtgtaccta
gtctaaccaccgttaaaagccttcgggaaggtccctcctaacttggaaag
acAGAATttgagctatttcaccaaaccactggagcgtaagttatttaggc
tatcacaactgcatgaaaaagttgaacgtgcgcatgtaaagttagttttt
aggcttttaaaatagatttaccacacttaacaaacagtgaaaacattcta
agtgaggtaaatctatttttaagactaaaagaaaaagtttgttttcattg
attgacattcattcgaccacttttggattcaactttacatatgcgtacat
tcaacttttttgtactttgccggtatcttgttttaccaagttaagaagga
ctttctcgagttacgaccatatgatgatctttaaagctcaagaagctcta
taaacaataaaggtagttattaaaaaaataacagACAAACATAAATTACA
Gtctgaataaaaatatcaaatgtacatttgaaaaattaagccaatttctt
taaagattctggaaaaagaattaaaatcattgctggaaatgaacttctga
ctaaattacagtagttagtattcagtttcaaaaacaagaaacaaaatttg
acatacaaaacacttttttcagtcaatgaatcagctcatcatcataacca
gtctgccattttttttattttgacttgcacaagtaatattgtaattcgtg
ttatatatcatacactgttttaatttgcatttataacactcgcatCTGCT
TTTCAAAGCtgaatcaaaactaataaattgtaatatgtaataatggtaat
agcatataacgaaATATGACCCGtggggggaggggtactagggcaagatg
ggttacgggaNACCCCCCTCCCCCGgggaaatatgaaaatattacaaaaa
ccgaacatttaaggaggagactaactacggggatgcttgtgcaacaaaac
aaacaaacacgcgcaacaaaatttcgagattcaagtccaatatctatgcg
tgaggCTATGAGCGCCTCCTCGtagctacgctcctgcgggggcaataatg
gtttgtttatatcatactaaacgctactgtactgtacattttactgtaat
agtcaaacgacaattttttgaaaggataaaaatttctaatttccgTTGCT
CAGAGCGGTTAATAACTGCTTGTGGTTTagatagggaatttcccagcaAA
AAAGGGATTTCCCTTAATTCAactccctgaggtaataaaaaaagacattg
agctttgaaaatgggtaatcagatcaaaacaaatccgGACAATTGTTTTT
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCAGTCACCAcctaccatcagatttatcctagtgactgaatca
aactagcttagatttctaggctactggaaaatgttaaaatttgcaaaaga
ccctcttggaaaaattcttttcatatcctaaaagtgagggtggacgagcT
AGTATTTTgtcccctggaaattttgaaatataatgaaaaaatgctttttt
attaTCCCTTTTTTATAATTCTTCTCTGATTGACCtttggaaatgttcgt
ccaccccttgTCTGGATACAAAATGGACTGGCCCAACGACCGTCAATTTA
TGAACTTTATGAACTGATGGGTTTTGTTTACCTAACACAGTGATTAGAAA
ATATAACTTCAAAGAATAACTTCTGACGTTTTAATTTGCAGGAATGAAAT
ACAATGTCAACGTGGCACATGCACTTGGAACACCCGGCTGGAAATTCATT
ttacaaattccaaaaatgtttgtaaaagattttcacaACTTTGTTACTGG
TAATGAGGATGCAGATTTAGACACTGGGACTGCCCTTGATTCGTTTGGAA
TTCAAGATTTGAGATTCGAGTATAATATCAATCGGGTAGTATCAAACGAT
GATAAAGGGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAAAC
CGATTTTGGTGATGTCAAGTAAGTCATTCAATTCAGAGAGCAAAGACTTT
GCTCTGACGGATTGAACAGTTGAACTGGATTGAATTTagctttttctttg
ctttgcgTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042979XLOC_042979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068976-exon-scaffold_491-1491911889:173748..174036TCONS_00068976-exon-scaffold_491-1491911889:173748..174036Clytia hemisphaericaexon
TCONS_00068976-exon-scaffold_491-1510915933:173748..174036TCONS_00068976-exon-scaffold_491-1510915933:173748..174036Clytia hemisphaericaexon
TCONS_00068976-exon-scaffold_491-1575043694:173748..174036TCONS_00068976-exon-scaffold_491-1575043694:173748..174036Clytia hemisphaericaexon
TCONS_00068976-exon-scaffold_491-1491911889:179589..179956TCONS_00068976-exon-scaffold_491-1491911889:179589..179956Clytia hemisphaericaexon
TCONS_00068976-exon-scaffold_491-1510915933:179589..179956TCONS_00068976-exon-scaffold_491-1510915933:179589..179956Clytia hemisphaericaexon
TCONS_00068976-exon-scaffold_491-1575043694:179589..179956TCONS_00068976-exon-scaffold_491-1575043694:179589..179956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:173748..179956 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237574	0.314231	0.627652	0.175446	0.53397	0.0843901	0.305439	0.190632	0.266932	0.0826597	0.0802315	0.263705	0.0526677	0.109392	0.0449675	0.096514	2.88572	2.90578	0.168364	0.440453	3.23272	2.63289	0.848052	0.464434	2.63781	3.82051	0.931214	0.81121	0.467076	0.0895524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top