XLOC_030068 (gene) - C. hemisphaerica

Overview
NameXLOC_030068
Unique NameXLOC_030068
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_123:87603..93626+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030068 ID=XLOC_030068|Name=XLOC_030068|organism=Clytia hemisphaerica|type=gene|length=6024bp|location=Sequence derived from alignment at scaffold_123:87603..93626+ (Clytia hemisphaerica)
CTGATatcaaaagtttctttttaaaatttcatactcAAGATGTGCATAAA
TGCCAAATcgttaaaaacgaaagtggttttttATACCGCATGTGTCTGGC
AGTAGTTGCAAAGCAGCTATATGATAAACGACAAGAAttatgaataaaag
aaaaatatgaatcTTTCCACATTTTGTGTTTTCTTTGCGATTTTTTCATT
GGTTTCTTGTAAACCAGCCACCAAAGAAAATGATGTTGAAACATCtttaa
tgaaagatattttggaACGTGCTTTTGGATTGGATAAAAAGAAGGAAGGA
GTGAGcgaaatttcaaagaaagatgAAGTTACTTCACTTAAACAAGATCA
AGCGAACGATAGAGTGAGTGCTTTTCGATTTTATTATAAAACCAAATCTT
TCGAAATTTACAGTATCTTCTAAACTTGTATTTCATAACATCATCCATTC
TGCACATACAATTCTCTGCTCTAAAGCGATATGGTGAATGCGACCATCTG
ACTTGGTTGTTCAGTCAAAACATTCATAGCCGCGCTGccatttgcttgaa
aacgaaagcgaaagcggttggattctaatgtttttatttggtgcgattgt
tttgatttagccAATCAGCGCGCTCAAAATCTCATCTAATAATTATCCCA
AAACTGGCTGAAAAAGATGAAACTAGTGCGCCAACCTAGGCAGATTCTCT
TGCGGAGCCGTGGTCCTTAGAGTGCATACTTGCCAACGCTGAGTAATCAG
AATCTGGTCGGAGATTAGTGAATCAGAGGAATCAAAATTGTGTTCCAGTA
GCAAAGGAAAAAGTTTAGGCTAAATTGAAATAACAATCGAGTCAGATATA
CAGTGGAACCTGcgtaactcgaacctctataactcgaacaagagTTTTAA
GGCCTCTTCAGTGAGCAAACTCTTTTAAACAAGTCTCTTTGACTCGagat
ttccataactcgaacaaattccaATTCCCCATATGcgcgttcgagttatg
gagattccacCGTATTTACTTTGTACTTTTCTTTgatatttgacattttt
cttcACTATTCTGTACACGTTTTAAGCGTTCACACGTTGGGGCAAGTCAT
GATGACACGCGTGAGATCTTGGGACGATGTGACATTAACAAGAAGTGTGA
AGCCAGTCAATACTGCGATGGaatgttttgttataaatgCAGAACAGAAG
GACATCACTGTGATTTGAACGgtataaacacccctgtctcacagacccgg
tggaaccttttcctcagtggggataaaaatccctATAGAAGTCCCAACGT
CCTAATGGTGATAGATATTCTATTGTTTataggttaaaaaatccagtggg
gatggttttaaTTTNTAACTCTCTGCTCTAAAGCGATATGGTGAATGCGA
CCATCTGACATAGCCGCGCTGcaatttgcttgaaaacgaaagcgaaagcg
gttggattctaatgtttttatttggtgcgattgttttgatttagccAATC
AGCGCGCTCAAAATCTCATCTAATAATTATCCCAAAACTGGCTGAAAAAG
ATGAAACTAGTGCGCCAACCTAGGCAGATTCTCTTGCGGAGCCGTGGTCC
TTAGAGTGCATACTTGCCAACGCTGAGTAATCAGAATCTGGTCGGAGATT
AGTGAATCAGAGGAATCAAAATTGTGTTCCAGTAGCAAAGGAAAAAGTTT
AGGCTAAATTGAAATAACAATCGAGTCAGATATACAGTGGAACCTGcgta
actcgaacctctataactcgaacaagagTTTTAAGGCCTCTTCAGTGAGC
AAACTCTTTTAAACAAGTCTCTTTGACTCGagatttccataactcgaaca
aattccaATTCCCCATATGcgcgttcgagttatggagattccacCGTATT
TACTTTGTACTTTTCTTTgatatttgacatttttcttcACTATTCTGTAC
ACGTTTTAAGCGTTCACACGTTGGGGCAAGTCATGATGACACGCGTGAGA
TCTTGGGACGATGTGACATTAACAAGAAGTGTGAAGCCAGTCAATACTGC
GATGGaatgttttgttataaatgCAGAACAGAAGGACATCACTGTGATTT
GAACGgtataaacacccctgtctcacagacccggtggaaccttttcctca
gtggggataaaaatccctATAGAAGTCCCAACGTCCTAATGGTGATAGAT
ATTCTATTGTTTataggttaaaaaatccagtggggatggttttaattttt
aaacatttaatttcgatTGGGAATGAAATATAAGTCAGTTTCCCAGTGGC
GCTAAAATTCCAAGATATTTTACTTCTAGGGACGATTTTTTCTAGTGGGG
TTGCGGCTTCAGCGGGtttatgacacaggggtgtgtatAACAGATTTGGG
AAAATTACCCTGATTGATTACTTACTCCTCGCAAAAACCATTCCCCAGAA
AACAGAGACAATATTGACCCGTCTCTCTGCACGAGGGAAATTGATCTTGT
GGGGTGGGGGTTGGTATTGACCGCTTTTTCATTATTTAAGATGAAATTTA
AGGGGATAAATTATGTTTCAAATAGAATCTTGATTCTTTATTTGAACATG
GGTGTTAAAGTTAAAGACGACACTTCAAAAGTGTTAAATTTACAATCCCA
CTCATCTAAAACCGTTAATTAGAAACCACCAATCATTTACATCGATTTTT
TCTCCCATACTAGGAGAATGTTGTGCTGGATCAGAATGTCAGTTTGGAAT
TTGTACCAAAGGAGCTGCTCAAGGAGACCCTGGTACCTTTTGTGATATCG
CCAAAGACTGCAAAGGTATTGTTTTTCTGATGGTATTATTGGTATTGCTG
ACTATATGTGATACCACCGTCAGATAACTCAGCCCCTACTTTAAAGACGT
CAAGTTTAGAAAATGGTTACTCTAAGGTACCCAAtaagaaatcttgaaat
ttctaGAATGATCAAAGTTAGTCAAATTAATCCCTATAAGGGTAAATTCA
CAACGTTTTCCTTTtccctcctttttagtcccgctaagggtctgAGGGTC
GAAATTCGTgtggcacatacccgtcaggtCGCAACTCTAGTACCCCCCTC
CCTCGGGCGAAAATATTCCTTATACATTTGAttctttcagaaaatgaaaG
TGTCTAAACATTTTGTCAGCTACACTAAAAATCTTTACTTATTTCTGTCA
GGCAAAGATGTGTGCTGTATTCGCGAAATTTCGATCAGCCATcatcattc
catttgtaaactCATGTTAAATGAACACGAATCATGCGGACCAATCAATC
TCTTCCATCAAGATACAATGCGTGCGCATATGGAACCTATCTGTGGTCCT
TGCAAAGCTGGACTATCTTGCAAAGGTGTTGGGTAAGTAAAAGATGTATA
AAGTGTCTGGAGGCTACTTTATTAAAAACATAGGTGTTAATATTTGCGGA
CCTTATAAAGGGACTTTCTTTTCAACAAAGTTTATCTAAGGGCAAGGAAA
CCcagaaaaaatctttctaaagGAAGGAAATGTTTCGGAAATTTCCATAG
GATCACTTGTAATCAATTTGATTCTTTCTTAGGTTCACAATTTTCTTAAA
CTTAACAAGTTTACTTGGTCCAAAACGTGGCAGACGCCTTTAGGATGCTC
CCTTTTTGTCCCTTCCCCTACTTTATTTCTTGAAatgttgtttaaaattt
ttcggaAGAATGGTAAAGTACTTATGAGATAATCTTGGAGATATTAAATT
TCTATCTTACAAATGGTAATAATGTAAAAGCTGTTGTGAAATAGATACTC
TTTTGAGAAGTTTCATACTGAATTTCCCAGGTCTTTCAAATTGACAGTTT
CTTGCTGTGATTCGTAATCATTTTCAGTTTCTTGCATCTCCTGTCCTTTT
GTATCTGGTAGAAACCAGCAAAGAATACCAGCCAATAGTCCCAAACTCCC
CATAATGATAAAGGGCAAACTTTCATGAATCACTTTGACACCTTTGGCAA
TCCATGGTGCACTTGCTGCTCCGATACGACTTGTTATTTGTAAGAACCCC
ATTGCTTCAGATTTGATCTTAGTTGGGTACAGCTCAACAGACCATACATA
GATTACTTGGAAACTAATGGTTATTAAGAATTTGCCGATCATTCCGAATG
TGGTTCGCACAACTTGGTAACTTGTTGGTATGAAAGCCACAGCAAGTGTT
AAAACACCTGTTAGAAATGTACAAACCATTGTTGTTTTTTGCCTTCCAAA
TCGGTTCGGGAAATCGATAACACAAAGCATAGCTGGGATCTCTACCACAC
TAACCAATGCAAAATCACGGTACAAGGAGCCTCCAAAATCACCAACAGCT
AACGAGATTCCGTAATAGACCATACCGTTGATCATCCAAGCGAATCCTAA
TAAAATGGTCTTGCGTCTCCTCTTGTTTGTATTGAATAATTCCTTTGGGT
TTGATTTATGTGTTGTGTCTTTAAGTGGTGCTAGCTCCTCATTCGTACTC
GTTTCTTTCCCATTCCATTTGGCAATTCTCTCGAACACTTGTAGAGCATC
TTCCATCCTATTCTTCAATCTTAACCAGCGAATGGATTCAGGAATGAATT
tccaaaacaacatcaaaacaaaatacgGAGCTGAACAAACCACCATTAAT
GTTTGCCATTCTTGAATAAAGTATGCAATCAATGGAGTTGCACAGACTGC
TAGCGAGTAACCTAATCCAATGATTACCGAAGCCTGAGCTCGATGTTCGG
TACCAACCAACTCCATCGTTATTGTAAATAAATTTACCGCAACTCCAGGG
ATGAAAAATCCAACCACGAATCGGAACAGAATAAACAGGTAGACATTACC
AACAAACGGTGAAACAGTACCAGCTAAAACTATCATAAAATGGGAGAAAA
AGAAAGCCTTTTTACGACCATAGTTATCTGAGTGCCATCCAATTGCCAGA
GCTCCAAACATCCAACCAATAAAAAGAATCGATGTCGTCATGTAAATTAT
CCAATCGCGATCACAATAAATATCGAATTCTGTAACAATTGAATATTCCT
TTGGTTTCGTAAACTCCCATTCAGTCCTTGGTATATTGCAACGTAGTTTG
TTTTGACTTGTGAATGTACCGTTCAAGTCGCAAACAGTACTGTTTGAAGC
ACATCTCCAGTCTGGTTCCAACCCAGCAAAAACCATAATCAAGATTTGGA
ACAGTGTTGGAAATGTAAACAGGAAGAAAACAACTTCCaataagatttga
aattttccatGACTTCCAATTTTCTCTAGGAATCCTTCAACTGTCAGCTG
TTCCTTTTTCTCCATGCTCTGTTTTTANTCTAGGAATCCTTCAACTGTCA
GCTGTTCCTTTTCCTCCATGCTATGTTTTTAAATCTGCTTTAATCGATGC
TACTATAAAATTGGATATATCTTTCCTTGCAGAGAATACAGCGTTGCTAT
TAAGTTATGCAACTGACATCTCACAACTaaggaaactttttttgctgCTT
ATTTAACCCCTTAAGTACCTTCAAAGTATGTACATTCACAAATCTATAAA
AACCTTATGTAAACAAAACCCAATAACTTAACACTAGCActctccaaaat
tttcaaaggtaTACAATTACTTCAAAAATTTGTTTGTTCGTCTTAATTCT
TTCAGAGGTTTTTTCAGACTACTTGTTTCAATAGTTTGTTATTATAGCAT
TATGTATGTTGCCATAAGTACGGCATAAACTTTTAAGTATAGTCGTATAT
AATATCCATCAGCATGGTTGCACTGTATTTTTCGTtaaccctgaaaattt
caacccCAGACCCTATAGAATACTTAGTTTTAATAGGTGTAATTTCGTCA
CTTCGCCCAATTATTGTACttataaatgaaatatttggtCTTTTgattac
ttttcattttctgtttCAGAATTTTCGGACGACACAGTATCTGCCTTCCC
GAAAACGAAGAATAATTGatggttttattttttgtatattATTTTGTaat
cttttctaaaaaattaaatctaCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047170TCONS_00047170Clytia hemisphaericatranscript
TCONS_00047171TCONS_00047171Clytia hemisphaericatranscript
TCONS_00047172TCONS_00047172Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047171-proteinTCONS_00047171-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_123supercontigscaffold_123:87603..93626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.41	0.62	0.82	0.21	0.91	0.34	5.19	6.12	10.84	5.62	7.26	8.01	16.29	13.32	10.33	21.54	15.92	17.33	0.66	0.64	10.38	11.85	11.38	10.71	10.44	14.89	2.27	0.47	0.1	0.12