XLOC_033005 (gene) - C. hemisphaerica

Overview
NameXLOC_033005
Unique NameXLOC_033005
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_210:160226..170077+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033005 ID=XLOC_033005|Name=XLOC_033005|organism=Clytia hemisphaerica|type=gene|length=9852bp|location=Sequence derived from alignment at scaffold_210:160226..170077+ (Clytia hemisphaerica)
TCTTCTCACCCTTTTCAGGTTTGTTTTATTTCGAAATTGGACTTACTGCT
TATCGTACTACTTTTGGTTGACATTTAAATAAGACATTTAAATTTCTAAT
ATATTGTTAATGTCCATCATAAAGTTGATTCGTTTCGATTCGAAAAGATT
TGAAGAAAGGAAAGTATACAAAGTAAAACCATATAGCAGAATTGAAGTAT
GCTTCTAATAACGTTAATTTTGACAAACATTGTTTTGGTACAATCTCAAT
GGTATTTGGgtgaagaaaaacaacaaaacacaacAAATCTTGATACAAAG
GATGCTTCAAAACCTGTTCTTGTAACATCACCAGTCGAGTGTATTTTGAA
ATGCAAGAGAAAAGGAATGGACAATTTCTATGTTAAGGATAAAAATGAAT
GTTTCTGTTTGAAGAGTCAAGACCAGGCGATTAATTCAGATGGAGAATCA
ATGCAAGGAATCGTTTATAAACAAGTAAGTACATGCTTCTTTTTGTAtta
gaatagtgtactttggatgagggtcaatcccggggggggggacagtcagg
caaattgaccgacgggtatgtgcggcggttaagggtatgtttttcaaaat
atcataaatgcactgcaagggtggacttttgataaatgcactgtaagggt
ggaaatttcagcaaatctgggaaaaatttcaaatttttgctcgaaaatgt
tgattttttttgctctaaaagagtttaaaatttgaaaaaatgcactgtaa
gggtatgaatttcaccgatttttttctgcactgtaaggctgcgattctaa
aagccaattttttcgccgcacataccgtcagttggtaaacccactgcccc
cccccccggggggtcAATTATTCTTAATGTATCTTTAATTTCTTAGACTG
TTTTATACAAACACGAAAAATGATCATTTTAAAGAGTTTGAGACTTTTGA
GTGCACATTGGGAGCTAAAATTAAAATTCTgcttcaaacttttttctgtT
AACCGAATAGAAAGTGACTTTATTCTTATCATAATCTGTGAAActtagag
ggtattcttagggtattcttagggtattcttacgatttggccaattttca
ctttatataaggtattcttacaaaaaatcattatgcaaaatatcagaaaa
aaaataatgagccaacCTCGAGAAAAAATGGTAACAGatgaacggacgaa
caaacaaaAGGTTAAAATAAAGGACATCCGTGGTAGGTCTAAAAACAGCG
GGTAAGCCAAggtaaaaattataattgcttAATGTTAACGGGTccttaat
ttcaaaacaaaggctgaatgaAGTCTAAACCAGATTTTACCAACttaaag
tcatcttttaaaagaatactCTGAAACAAAAGtggtgtttaaaaaaaaag
tctttcGGAGAAGAGACAACTTCTTTTTCCTCGAAAAcgtatatttgaaa
aatatttgattttttttcagtattGTAACGAAGAAACATACGGTGATTCA
AACCCATTGGTCATTAAAGGTCAGTATTTTAAACCGTTTTCCGAAGATAT
ATAAATTCACATGTATGGTTGATTACAAAATTATCACAAGATGATCCAAC
GGCAAATAATTCAACCCGGGAACTCCTTAAAACTCATCGGATCAGGCGAA
AACCAGCTTTGACTTGCCCAAAATGCTCGAAGAGTTAAAAATGCTTGATA
TTCAGCCAATCGGATTTTGCTTGCTTTTTTAGATAAGAAGAAACTAAAGA
TTCGCAAAGCTACCTCCACAACACCAGTTCTTCAGTGGGCTGATTTGCAC
ATTTATCGGTTGGACGTCAAAGCTGGGGAGCATCGGCTAGGCGATATATT
CATATTTACGGAATTGGATAACACAATGTCTGGCAATTATGTCGTTAGCC
CAGTTAACCCCAGCGATAACGATATATTCAAAGTACCAATCTCTTACGAA
AAGTTCTGGATGCTTGGTGATAGTGCATTTTGGAGGCCAACTTGCCCAGC
TGGGTATGCTCGATTTGGAATCTTAGGCACGGTACAGGGAAAAAGGCCTG
TCGACGGTGACATCTATTGTGTCAAAGAGGAGTATACTTTGGAAGGTTCA
ATTGAATGGGAACTTCTCTGGAAATGGGACCGTGATGCTTCGAACAGAGC
AAAGATTTTTAAAGGAAAGTCTGGGCAGCCCGAAAAAACAGTGGATTTGA
TCACAGTTTTGGTAGCCCTGAAGAATATCCATCAAAGTCCATCGCAAAAA
TACCACTTTTTGTTGAAAGAATTTATTGTTGAGGAAAATTAAAACATACA
TAATATTAACCCATCGGGCAGGTCACACAGCACTTAAATTCGAGGCCAAC
TTCTATAAATTGACAAAGCATCCCAATGCATATTATGCGagatgttttaa
aaagataccATTTGTGATACGAATATATAAACAGACATGTTTAATTTGAA
ATTCGTTAAAAACAAAGCCATCGTACGGGGAAACTGTAACTTGTTTTAAA
TGAGGATTTTGAGTAGGGCGTCGGGCGGAAGTGACTTTTAATTAACACAG
AAGCGTAAAACAGTGTGAATTGATTGTTAAACTAACAGACAATGGTATGG
TGACAATAATTATATATAAATTTCTGTTTGTAAGTAAATCAAATCTGTTT
TGACATGATATTTTCATTAATTGTGTTCTATTGTTTTACTGAAGCTACtt
aaatgggataaaatttcgcggatttcgcgaccaaaatttgttccctccat
tacttttttgctttttttctactttgtttgaattagtcgtctagcttgct
agactagtagGAATGGCAAGCAAAATGTTACTAAAAGTTTCATGAACTTT
CCaacaatttgataaaaaatatgaCATACCAACTACTTTCTGTTTAGAAC
aattttaagttttagtttataTTGCTTTTGATAAGCAAGGTTATTTTAAG
GTTATTGTTTCAAAATTCGCCTACTTTAacgggataaactttcgcgggga
ttaaaatTCGCAGATTTTGCGGATTTGGGTGTAAtccacgaaattaagtc
ccaatggaaattcgGAAGGGCTTAATCCGCTAAATTTAGTACCCGCGAAA
AATTTCTTCGATCcgcgaaaatttcaaattcctatCGTCGTTTTTTTGTC
CCGCAAATCAGACTAACTGAAAATCTCTTTGTTATTTTCTGAGGCTCTGA
ATGTTTTTCAGGCGTCTTGTTCTAATGAGATTGTTCTCATAATAAAACAG
ACACGCGTAAATGTCAGTTTGTTTGCAATCGGAACTAGGTACGTTTTACA
gtttattgagatttttttttaaagtgaaaaGAAATGCCGCTAAAAATCAC
TAATTTATATTGATGTTCTCCGACTGAATATTTCAACCGGTAAATATTGA
GCCGAGTGATCTACATGCTAGAGTTAGTAAATAAAGgttatctttttttt
gttgGCTCAAATCGCCTCATATTGTCCACATGCTGGTcatattttaggga
aaatttgAGATACTTATATCCTATTTTTACAGACCCATAAACTGCTTGGA
ATTCAGCATTTCCAGGCTCTGCATGCCTTTAAAACGTGTCATGTCGTGCG
TTCTGACTAAAGTTAGCTTTGGCTGGCTGTTaactagcctgggtatccag
actcaaaatttcagaaaaaaacactcttacctcaacatacaaagtttcta
aaattttagagtctggtgcaactaaaaaagttgggtacagtttgtttgat
actgcctgtgagtaaacccttgttgacagactatcaaaactttgtaaacc
aaggtagacacacataattaacttactatAAAACCgcttttacaaaactt
tcaaaactactttaaactacatcaaaacatcagccacatttataaaggct
cctttccagcggccattttgtttagaaatgaacctgcgtTTTCATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNttttttcaaccgttacgtcagatcgcgccaatgg
agttgcttcatttttcttttgaccaatagcgtggaagctttgctcgaaaa
agttcgatcgaagcgcgcgcaagtggagaccggcctttaaagAACAAAAA
TTATAAGTACaaacatgaacatataaacgactggacatccatctcctttg
tctttttgtagaaaaggctgctagcttcgttgccgcctcgttaaaagcat
aaaatgaaacaatagattttgatgatataccacttgggaataccttgcta
acaacgtcaaaacttcgacaaaagtctctgtcgttatactcttctcaagt
cttttatctatatcaaaacaaagataacagaggcaaaatcatcgtcaact
tgtcaaaactccgactaatatttctaaattttgacttaaaaggtctaata
attttagagagtgtcgcattctaatttcgatattcttatgacacaggctc
taaactttggcaagctaNctaaattttgacttaaaagtgtctaataattt
tagagagtgtcacattctaattttgatattcttattacacaggctctcaa
ctttggcaagctatttcttttgagtcataaaaaaaattattggagtggca
aaagagattcaaaagtttacacgcagttgaaattatGCATTTCAGAGttt
aaaatgttgataaaatatattgcaaacttgtaaaaaaattcgaaagtaat
ttttttgtacattaggagtaGTGTTCAAGCTAtatcaatctttttaccta
aataattcaaaaaaataaaattatgacggaaatattgtcggatttttcac
accaattttgaaatacaggcggcaacgaagctcgcttcaaagagacaata
aaagatagatgtccagtcgtttatatgttcatggtacAAATTAATCCAAT
ATATAGCTGAatgcactaaaagtcctttggatgttaaagctggcttaaaa
aaacgatcaaacaaaaaaaatctcttccaAGTTTGACTCTAGAATGTCGA
TGTCATTTTATAAGCGATTTATGACCAAAATGGGGGGGAAACCACCACTT
CTTCATCAAATAACTCCCGTTCAGTACAGAAATCGACCATACTCGTTTAa
tagtcttctatatagtttttcaagagctttcagattctataattggtttt
ggcctaaaatgagtttgaaatttccataaaaattggACCTAGGGCTTTAG
CctaatttttcaataaatgggtCCGAAAATAAGGGCTACCCTTAAGATTT
TTCTAGGCAGCCCTTCGAATATCAATCCATAGGGTATTAGGCATgctttg
tttcaaattttggtgctttgtttcaaattttcacgataattacaccaatc
aggccTACTATTAGAAAGATTTtccgaaaatatatttttagttcggtaaa
agatacaccatctaccacaaacatttttttaaataactagtcgcgcggct
gaggtcgaaaaaagtggctagaaaatgattttcgtgatacacctcttaga
ttccacttttttcgatggaaactctcgaattagtatatgtaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNagatcaaaagttatgggcctatttgtggt
caaaaaggtgtttaattttgcataaattaatgcagattgtggggaaattc
cctgttttccatcagatTTTACCAcaaatatcgtggaaactttttgattt
tgtaatctacacatactaattcgcgagtttccgttgtttttctTGGAATC
TAAtatatgtatcacgaaatgaaacgtttttcgacctcagccgcgcgact
aaacCTCTTCAATGTTGTAAtgctcttcctcgcaaaagtcatcattttct
tttcttttctttgcaactctttgtttttatcagattaaaaaaaaaaaaaa
gagtcaattctaaattgctttttttaaacccttgccgtaacttttcgaat
ttaaacatggacAGCGTGCTTTTTCTATTCAACATTTCCAATAAAAATTA
GGATTTCCTATTGACATATTTGTTAAACAACCTACTAAAACAGAGATTCG
AAAAAATGGCTTACTTAACATAGCCCACCCCTAATTTTAGCTGTTTATTA
AGCCAAAAGAATGGAATTTTGAATTGCAGCCCTCATTAGGATGAAGCGAC
CATCGAAAAAAGACAATTACAAGATCTTCGTAAATTTAATTCAGGTGTTT
TTATTACTAAAGGGCTGAAAAAAGGTTGTCTAAATTTGTTTTCATAGTAC
GAGATAATAATAAACAATTTTGACACTCCCTGCAAGGTCTAATAGAGATT
GTTCATCTAACTTGCCAAGCTGTAAACCAATCACCGCACTGTGTGATACA
TGTTTCCTCATGAGaagaaactatataagaacagaaagcTTCGTTCTagt
ctcattttttttctctaaacaaAGTCTAAccttttagaattattttccac
attttcagaatgataagaatcaaacaatcaaatcattttttagatttttc
aggTGTGTCATAAAGGTAGGTCATACGGCCACGCCACAGAGGAAGGCCAG
GTTTTCGACTGAAACGGATTGTTCTTAATCTTTTCTTATGTTTTGACATA
AATTGATGAGCCTGACGTTCTTATAGAATGTTCTTACGAAAAAAGGCATA
TATTTCCTATAATAAATTCCGTACTATATATGGTTGACAGATGGGCCCTT
CATTCCCTACCGTTCCAAAAGTTGAacagaaagtaaacaaaaaaagctCT
TCATCCAAAACAAAACAGTTGGTCAAACCAAAacataaatttgaaaaaca
aaaaaacaaaggaaatgaGAGGCTATACATACAGTTAAAATAGCTTCAAC
ATTTATCTAACATCATGAGAAGGACGTTGTAGACATTAAAGTGACGCTGT
TTGGACGTGTTGTGCCAGGGAGCATAACACCTACAGTTTTTTGTTTCAGT
CTTCTTCTCACCCTTTTCAGGTTTGTTTTATTTCGAAATTGGACTTACTG
CTTATCGTACTACTTTTGGTTGACATTTAAATAAGACATTTAAATTTCTA
ATATATTGTTAATGTCCATCATAAAGTTGATTCGTTTCGATTCGAAAAGA
TTTGAAGAAAGGAAAGTATACAAAGTAAAACCATATAGCAGAATTGAAGT
ATGCTTCTAATAACGTTAATTTTGACAAACATTGTTTTGGTACAATCTCA
ATGGTATTTGGGCGAAGAAAAACAGCAAAACATAACAAGTCTTGATACAA
ATGATGCTTCAAAACCTGTTCTTGCAACATCACCAGTCGAGTGTGTTTTG
AAATGCAAGAGAAAAGGAATGGACAATTTCTATGTTAAGGATAAAAATGA
ATGTTTCTGTTTGAAGAGTGAAAACCAGGCGATTAATTCAGATGGAGAAT
CAATGCAAGGAATCGTTTATAAACAAGTAAGTACATGCTTCTTTTtgtat
aagaatagtgtactttggatgaggatCAATTATTCTTAATGTATCTTTAA
TTTCTTAGACTGTTTTAtacaaacatgaaaaaatgaTCATTTTAAGAGTT
TGAGACTTTTGAGTGCACATTGGGAGCTAAAATTAAAATTCTgcttcaaa
cttttttctgtTAACCGAATAGAAAGTGACCTTATCCTCATCACAATCTG
TGAAActtagagggtattcttagggtattcttagggtattcttagggtat
tcttagggtattcttacgatttggccaattttcaccctatcagaaaaaaa
ataatgagccaacCTCGAGAAAAAATGGTAACAGatgaacggacgaacaa
acaaaAGGTTAAAATAAAGAACATCCGTGGTAGGTCTAAAAACAGCGGGT
AAGCCAAGGTAGAAATTATAATTAGTTAATGTAGATGGGTccttaatttc
aaaacaaaggctgaatgaAGTCTAAACCAGATTTTATCAACctaaagtca
tcttttaaaagaatactCTGAAACAAAAGTGGTGTTTAAAAAGTCTTTCG
GAGAAGAGACAACTTCTTTTTCCTCGAAAAcgtatatttgaaaaatattt
gatttttttcagcaTTGTAACGAAGAAACATACGGTGATTCAAACCCATT
GGTCATTAAAGGTCAGTATTTTAAACCGTTTTCCGAAGATATATAAATTC
ACATGCATGGTTGATAACAAAATTAGCACAAGATGATCCAAGCATCTTAT
TTAGGCCCGGCGAGCAGCAAATAATTTAACCCGGGAGCTCCTTAAAACTC
ACCGGAACAGGCAAAAACCAGCTTTGCCCTACCCAAAAACTCGAAGAGTT
AAAAATGCTTGATATTCAGCCAATCGGATTTTGCTTGCTTTTTTAGGTAA
GAAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACCAATTCTTCAGT
GGACTGATTTGCATATTTATCGGTTGGATGTCAAAGCTGGGGAGCATCGG
CTAGGCGATATATTCATATTTACGGAATTGGATAACACAATGTCTGGCAA
TTATGTCATTAGCCCAGTTAACCCCAGCGATACCGATATATTCAAAGTAC
CAATCTCTTACGAAAGTTTCTGGATGTTTGGTAATAGTNCGATATATTCA
AAGTACCAATCTCTTACGAAAGTTTCTGGATGTTTGGTAATCAAGCATTT
TGGAGGCCAACTTGCCCCGCTGGGTATGCTCGATTTGGAATCTTAGCCAC
GGTACAGGGAAAAAGGCCTGTTGACGGTGACATCTATTGTGTCAAAGAGG
AGTATACTTTGAAAGGTTCAATTGAATGGGAACTTCTTTGGAAATGGGAC
CGTGATGCTTCGAACAGAGCAAAGATTTTTAAAGGAAAGTCTGGACAGCC
CGAAAAAACAGTGGATTTGATCACAGTTTTGGCAGCCCTGAAGAATACCT
ATCAAAGTCCATCGCAAAATTACCACTTTTTGTCGAAAGAATCTATTGTT
GAggaaaattaaaacataaatAATATTAACCCATCGGGCAGATCACACAG
CACGTAAATTTGAGGCCAACTTCTATAAATTGACAAAGCATCCCAATGCA
TATTCTGcgagattttttaaaaagatacacTTTGTGATACGAATATATAA
ACAGACATGTTTAATTTGAAATTCGTTAAAAACAAAGCCATCGTACGGGG
AAACTGTAACTGGTTTTAAATGAGGATTTCGAGTAGGGCGTCGGGCGGGA
GTGACTTTTAATTAACACAGAAGTGTAAAACATTGCGAATTGATTGACTG
TTAAACTAACAGACAATGGTATCCTGACAATAATTATatataaattttca
aa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052114TCONS_00052114Clytia hemisphaericatranscript
TCONS_00052115TCONS_00052115Clytia hemisphaericatranscript
TCONS_00052116TCONS_00052116Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052115-proteinTCONS_00052115-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:160226..170077 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.22	0.07	0.04	2.72	1.55	2.99	2.73	1.81	1.6	1.06	1.82	0.52	0.43	0.05	0.04	0.72	1	0	0.1	5.19	4.08	1.67	4.51	3.56	11.05	0	0	0.08	0.04