XLOC_033828 (gene) - C. hemisphaerica

Overview
NameXLOC_033828
Unique NameXLOC_033828
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_233:1430419..1435596+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033828 ID=XLOC_033828|Name=XLOC_033828|organism=Clytia hemisphaerica|type=gene|length=5178bp|location=Sequence derived from alignment at scaffold_233:1430419..1435596+ (Clytia hemisphaerica)
CGACAAAcgaacaaacaaaaaaacaaaaggtATTGATCGAGTTAGAAAGT GGCATTCGAACATTCCGTTTTGTTGGGAGTGTATTACTTAAACTTTATTG TGAAAGCGAATTTGGAATTTCAAAACCATGAGCAACAATTCGAATTTCAA CAGCAATGCTGTCACAGCCACCAATCTGCAGTCAATATCTTcccaacaac agcaacaacaacaacgatcGTACTGGCAGCAACATCGCCAACGTCTTAGT CATCCTCCAATTTTGGAAACAAACACATATTCCGCTTCGTCACCTTCTTT CAATTCAATATATCCAATCACTACATGTCGATACGAATACACAACCAATT TCGTTCCAGCTATACCACAATCACTGACAGCTCTGGCAAGTTCAACACCA CCATCAGGTCTTGGACATTCAGTATCATATCTAAACACACCAGCTAGCTC AGACCCTTTAGATTATAACAACACTTTACAAAATAATCTGACGTCTTCAG GATCAGTTATAAACTCTCAGAACACTAAATTCCTATCATGTCAATATTCA GGATCAACACTACAAGGTAAACAGATGGAATCTGAAGATCTTCATTTGAC AAGTGGTGGTGTATATCAAAATGCATCGCAATCAAGAGACATTAACAATT CACCATCATCTTCGTCAACAATATCCCATTATTCATATAATGACACAAAT AACAACACTCAAACACGTATTAAAGACACTGATAAGAATACAGATACTCA AGGACAATCTTCATCATCAACAACTCAGAAAAATAAGATGCCACCTCTAG ATATGAAGGAAGTGATAGAAACTCTGGCAACACTGAAGAATAATGGACAA ATAAAGAAGGCAGATGGTGAAGAtagtgacaaaaataaaaataaaggttA GTTTTTTACCCTTTCGAATCCGAAACGCCAGGGTATATTTTTTGACCGAA AAGAgctcttttggaaaaaatcaagaaacatcCCATTTAGCTCAAACTTA TTCTGGCAAATTACCCaatcattagattttttttgataactgATTTTCAA TTCGGAAAATACGCCGTAAGGCCATACGTTTGGAAAAGCAGATCCTACCA CACCGAACACCTTGGTTAAATAAACTAAATGAGGCTATTTGTGCTACATT TTGTAGAAAGAGTGAAAAGGGGCTTTCCaataaaactatttttcttttgc ttttggaACACAGTATAATATTGCAAAAAGTGAACAAATTTCGAATTAAA AATGGTTCTTCCTATAATTGGAGATTTTAAAGTAGTTTGACCAAGGGACC AAGTTTACTATCAATCATAAAATCATTTGAAAGTTTCGCATCCTAGTTGC AAATtaagatataattttttttcttcaatctaaAGTAGCAGGtacctaaa aataaagtttccAGTTTGGTAAAAAGAGCTTACTGGAACATCATTTGATT CTGGTCTGGAAAATatacacttaaaaaaaaaactaaactgtGTTTCTGGG TAGAAGATGTTAAATTTTTGAGGACAGGAGTAGTGTTGTGGAGCTTTTGA AAGGTCTATCTGAAGGGTTACATTAATCACACACCAAGCGTttgctcaaa aaattaattctttttatGTATCTTGCcagttaaaaaaaatcagattttgt tCAAAGACTTTGGAATTAATTACCTCAATTTTAAAGGTAGTTTTCTCTTA GTTATCTGTGTATCTGGCAGACTATATATTAAAAGACAGTACAAATATTT CATAAACAAATTATCatcaaagattttatcaaacGCGCATAAAATGTCGT ATCTTGATCACTTATGATTTAGATGAACTTTCAAGTTTACCACTTACAAA TCTAGTGACCCAAAGTCTAGGAAAAGTTTTGcgtatttttgcatattttt gcaGACAAGAAATTGTCAAAAGGAACTATAGTGCTGGATTAAGTTTTCGA AAATGGAATCATGCAATAACATGGTCACAGTCGGATTCTACGTGTTACTT AAATCCTTTAGTAATCCGCTATTCCTCAAAATAAACCCAAAATTCATTcc atcattttaattttttttataagcagagCAGGACTCAAAGCTTGCACTGT AATAATAGACGCAAAATTTTCAGAGAAATATTCAAACCTAAAAATTATAC AATTCAAAGTTTTACGTTCGCTGTAAGTCCTCTTAAGTTAAGCATGCTAA GTTTGATTGTGCATGTTACGCTTGTCTAGGTGTAACAGTAAGTCTTCTAA TTATAAAAATGAACAGGATTTTTAGGGAATTTAACTAAGGGAggtttaaa aaaacattaaaagttGCTTATTGAAAAGACGTCTCAAAAACAATATAAAC ATGTTTCGAACTAAAAGCACAAGGAGACAGCCATGTTTAAACCCCTACAG AGAATTTGTCAACGCATTAAGGCAGCAAAAACATTGTTTGGTGCATTTTG TTACATGATGCAAAACACATGAATCAAAAGACCGCGCTTTACAGAATTTT GATCCGTGGCGCAGACTTCCTACTGTGTGTAATAATTGTGTGTTAAATCG AAACATATACCAACATTTTTACACAAGACGTAAACAATAAATGTCAGCAA AGAATTTaagtctttgtttttttaagttttatgtaaaaagattaattcaa aaaagtgaagaagttATTTGTCGGACAACAGCATACATAGTGTTTTAAGC CTCCCTGAAAATAAATACATTTAGTGACTAAAAGGGATAACAACACTTTG TACCCCTTTaaggtagaaaatgaaataaaaagtgaATACGAAAAATCGTC CAAAGgatattgaaaatttgagatcggattttatagattttgcattaaat gtttaaaaattattaGAAAACCTTTTCTTAGTAAGAATTTCTTCcgaaaa tgttttaaaacatCGTCGGACTTTTACGTATTGAAAATAAGTTGctcaat aataaattttgacACGTACTGGCGGGTTCCTTTGACTTGGCTTTTTACGT CTTATTGAAGCCTCGTAAATTAACACAGAGAAAGCATTTTCATCTGTTAT TGTCTTTCAAAGATCATAAAAACGCATAGATATTTGAGAAGTGGTAATAA CGTTGTAAAGACAGCCATAAGACGTACATTTTAGGTCCAAGACAAAAGCT ATGTTTCTAAAGAAATAGGAGAAAAGAGTTTACGCAATAATACCTTCAGG TAGATTGACTTAGAGACGGAGAGAGAACCACGATTTGGAtaagcctggat atccaggcagTAATTTCATATTTTCGATGTTTCTGGTTTATCCTCTGGTC TTTCTAAAGCGATTTGCATTCCATTATCAGAATCAGAAGGCAATGCATGC TTGTCATTTTGTCAATTCAGTGAAGCTAACAATTTAACGACTTTGGGTTT AAAAGCATCTAGGTAGAGCAAGCTGTCAGGCCCCtaggaaacattttcat tttgaggaGGCAAAGTGAGAAATATAAACCGAGGGCCAGCCATGGATTGG CCCGAGGGAAACAAATTCGcaatttaaggtgtctagattgctgGAAAACG TATCTAATCAAAGGATTATGTTCAAAATGAAGCCATTAatacaagatttt tttttgggaGGGGACCCCTTTGCCCCCTCCCCGGTTGCTACGGGCCTGAG TTGTAAAAAGcagaaatatgaaaataagaaaaaatttaaaactggAGTAT GCAGGCTTAGATGATAGGTATGAAGGAcaaatgagtttttttattatttt gtagaGAAAAGGGATTTCTTAGCCTGATAGGAATGAACATAATGCCAACG CATAGTGCTACTAACTTTGCAATTTGACCCCTTAAGTGGATAGAttttgg cgattggccaaaatacgatttttggcggagatttaatttggcgatagatc aatttcgtaaaatttggcgaggatttgatttggcgaattggaaattttgg cacactgaaatgggtgaaaattactcaaaaatatactaaaaatttgcgat ttttcacataattctctttttgttaaatttggcggggattcaaatttaat tcccgccaaaatttatccacttaaggtattgaAGAGAGATTCTTTTAACA TTTAAGGGACTCGCAGAGCCTTGCACATCTTTtgataagaacataaggtt caCATGGtcaagagcaagttaagaacattttaaggctttccgGACTCTTG AAGTAAAACACTCGAATCCATaggaaaaattgacaaaatactcacaaaat ggtacaAATAAGAATGTTATAAAAATGTTAAGGCCCTTTTCAGGCTTTAA GCTCAAAAAGAAATGAACCTCCGAAGAGTTTTAGATAACCCtgatagaaa aagtgtattattcgtaattacacccctgtctcacagccccggtggaactt tttaaaaatttaaaaattcctattgaaatcctaatggggataacaatttt attgtttcaaggttaaaaatcccagtggggatggttttggagtgcaattt ttaaacatagaatctcgagtggggatgaaatcaaagtcaatttcccagtg ggctTAAATTCAAgagtattttcccaccggggacgaaattgtTGCTTAAT TTTCCAGTTGGGCTGGGGtctcagcgggtctgtgacacaggggtgtgtaa TTGGTTCTTATAATTAAACCTCTTGGTCATATAAgtatatcaaaaatata tacataatcctttttttatctttctacaGAAAAACCAAAAGACGAGAAAC CACCAAAATCATGGCAATCAGCCAAAGTTCGAAAACGATCACGAACCACT TACACACGAGCGCAACAATTAGAACTGGAAAAAGAatatcgatataatcg atataTATCGAGAGCACGTCGAATCGAATTAGCTAAAAATTTGACACTAA CagaaaaacatatcaaaatatgGTATCAGAATCGAAGAATGAAGGAGAAA AGAGACGAGGAAGATATTATGAGAGGTACAACTGTTTTGGATCCTCGATC TTcttattattaacttattttttattttatttttcaaactttttgccTCG CTTCGTTTTTAGTTATTTCTTGTACATATTCTTGTAGTTTGTTAGATAGG CTCTTTTATAAggacaaaaactaaaaatgttaaaaatttatttgatatcG AATTTTTGGCAGGGAATTGATAAAAAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053612TCONS_00053612Clytia hemisphaericatranscript
TCONS_00053613TCONS_00053613Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
putative Pdx/Xlox homeodomain transcription factorTCONS_00053612-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1430419..1435596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.14 0 0 0.16 0.15 0.21 0.07 0 0.17 0.1 0.02 0.02 0.15 6.24 6.05 0 0.14 5.71 6.03 2.44 3.57 6.6 3.84 0 0 0 0