XLOC_039492 (gene) - C. hemisphaerica

Overview
NameXLOC_039492
Unique NameXLOC_039492
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_378:1627..5595+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039492 ID=XLOC_039492|Name=XLOC_039492|organism=Clytia hemisphaerica|type=gene|length=3969bp|location=Sequence derived from alignment at scaffold_378:1627..5595+ (Clytia hemisphaerica)
CTGGTGCTTCGTTGTTTGAAGTTGAATTCAAAATAGTAATCACTCATTTG TTATTCTGTTGGCATGACATTTTTTGATGGATTTGTTGGTATTCCAGGAT GCTTGCGCCAAAAGTATCGCATTTAATGAGACGGATTGATTCTTTTGCGA TAACCATGTTCCTTTCACTGtttcaatttgattttcaatttatcaaaaaa tattttcattcttGTTAGAGAGGTCATTCGACTATTCGTGGTTGGTTGGT TACGTGCATCAAAAAATTCCTTATAAAACATTGTTTTAATAGCAAGTAAT TATTTAGTCGTTAATCGATAATTTCATTAATTGACATGTTAAATAGCAAC CCGATTGAATGCAATTTCatttatattcaaattttttattctcGTCTAGG TCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCGATG CGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGGC AATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAAC GGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAACTT CAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGAG AAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAATAG GTAACGGGTTTcccgttttttataagcaaatgtctacccctatatcaggc tcgcattatgcttagcattctattgttcttaaaaaatagaGCTactgttt aggtaccaaaaatgagcctgcatatgcttataaacgttgtACTAAAAACA TTTACCTCTCCATGCTTAGGATCCTACTTCTNtgcatatgcttataaacg ttgtACTAAAAACATTTACCTCTCCATGCTTAGGATCCTACTTCTAATAT TTGTTTTCCTATCAGAGGAATTTTAACTTCAACTTTTTCTAGACAAGTAG GCGACCGACAGAGGGCCATTTAAAACGGTCGTATCTCGACatgaaatttt ctaattttaaagGTGTTTCTAACTTTTATAATttaacataaatttttttt acagcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGA AGAAGCTCTCTCCTCTCTAAATAAGGTATGAAGAAGGAGTTTGTCGTGTA AGATTTCATCTGCTAACTCTAGAGAGTTTGTGCTTTTGATAGCAACTTTT ACAGTTAGCCAATAATATTAAggccatgttcgcacgtgacggttcaTTCA AGAAGTCTTTTCTAACCAATTGAATGGCTTCATTCCGTTTCGAGCGAAAC TGAACCGTCACGTGCGAGCATGTTCGATAAAAAATAAGCATACCTAAAaa ctgaaatgcaaaaaaaattcgtgcagcttttctaaaacgctgactTTTTT Cagggttacttttaaagctgtttgagctttcttagaccaaagatttttac ctgcggcgccaaattacaaagaaaactttcattcttTGTACCGGATCAAT CTTCCAACTTAAAAATTCGAGATTTGCATGAACCCAAAAAAATCAACAAg tctaagcatataaataatgataatttaaggctgaaaatgagattttgcta agcatattgagCCTCAACCCGATTTTCCCgcttatgcttataaaaaaaag agtgtatctGGTTGTTAAATTAATATTCCTTCGGCTTAATTTCATAGGAC AAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGGACGAACGCTGG ACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCGTCTTACCAAAA GTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACGATTCTAACCGC TCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAACCTCCGCGTAC TCGattgaatctgaaaaatatcgtcAAATTTAAAGAGGTTTGGTCAAAAA TTAGAATCACTAACTAACCGTCACTTTATCCTTTTTTCattcgggggggg gggctgagaGTTACAAGGGTTGGAGAATGTTACGCTTTGAGGGACTTTAG ATAGTAATTTCGTTGGAATTACGAAAGAATTTTGTGTCCTTTTTGATGAG TGATAGTTTTTGCACCCATAGAAAGACTTCAGAAGGCGAGAAAAAAACCC GCTTCTTTTTGCACTTGCTACAAACTCTTTAGCTTTAAAAACCCTCTcaa tctagaaaaaaatcaaatagaaTCAACAACAAGCGACAGTTCTTCTGCAT CCTTAACTATATTTCTtattcgtgttttttttttcagcaatTAATGGAGC GTAACCAGACATTGAAAACTGACATTGAACtgttgaaattcaacaaaaca gACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAATAAAAAGGTATG AAGAATTTCATCCTCGATATAGTTAGAGTTTTCAATCATAAATTATCGCT CCAAAGTTGGTCGTCTTTTTTTTCATCAGCAACTGTTAAATTCCATGATC TTTTTGTACAATATGCcttaaagaaacttttttttgagaaCTAGCTAACG AATTAAtgtgattttttgtttaaataaaACACTcatttgtagacaaaaaa tcaatttaccATCAAAAAGGAGCTCACATTGGCTCATTTctattttcgtt cttttttagGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGCCGG AGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACGCCA GTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCTGGTAAGCTTTTGA ATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTCACAGTATTGAACT TAGCAGACATTCTTCAACAACACGTGACACGTGACTTGAAGGTGAGAAAA AGTGTCGAGGACAAAAACATTTGCATTTgtatcatgcaaaatattgaTGT CCTTttctttggtaaaaaaaaactatttctgCAAAGTGTACAATGATTGA TTTAAAACTTTTACCATACATTATTGGCATTAGAAATCTGACAAAACTGC CAGACAAGACTGTTCCTTGTTCTGTTACATTTGTCAAGTGTCAAGTTGCC AGTTTTGGTTGTTCATGGACCAGCAAGGTTCAGTTCTTTTAGACACGTGT GATTCACGGGCATATTTGTTATTGAGAAATATTTGCAATAATAATTTGAA TAGagtttagctctagtttagatggcctacttttcgccctgcctattcta attgtgagaTAAAGTGAGCAGAtagttggctgtctaaagtcataGATTAC CCTCTATTGAcgtcttctttcaatcttttccgaGCAAACTACCAACTTTG CGACCACTTTTCGTCTACTCTACAATAAGAATAGGCAGAGCGAAAGATCG ACCATCTTGGTAAAAAAGTGTAGTCCCTTGAACAGTTGAACAAAACTGCG TTTTTTGCATTGCTCTTCAATACCAGAgtaaccagaagaaatttcttgcG ATGACTGATGAACGAGGTCACATTTTCAATGGTAATTTATTTCGAAAACC TTTTGGTAATGTATTTAATTGAACGCCAAAAAACTCACAGAGATTGCCCA AAATaaggtgaaattttttccacaGTTCAGTTTCACCGTGAATGAGTTAT TGAATACAAATGAACGAGGGATAAACGGCTATTGCTAGTCAACTAGTAGA TAAACacaatttccaattttttacaagcacactttaaactttctttaata tttttttagactatgataatttttttataataatattttgacaaaagtaA TATTATGCATGCACTCTGTACATATATTTTGTAAATACCCATAAAAAGAA TATCTAACCAGCAATGACCAAAGATAattaatcatgataaaataacTTGT CCTTAAAGGTTTTATGTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063042TCONS_00063042Clytia hemisphaericatranscript
TCONS_00063043TCONS_00063043Clytia hemisphaericatranscript
TCONS_00063044TCONS_00063044Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063043-proteinTCONS_00063043-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_378supercontigscaffold_378:1627..5595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.98 4.46 1.1 0.68 10.05 7.64 15.06 15.99 14.21 15.09 14.21 13.25 15.83 16.28 9.88 14.61 9.87 9.3 12.3 23.24 8.38 7.54 10.68 10.25 6.1 7.83 7.03 4.95 10.74 12.32