TCONS_00047118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047118
Unique NameTCONS_00047118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047118 ID=TCONS_00047118|Name=TCONS_00047118|organism=Clytia hemisphaerica|type=transcript|length=1263bp
ATCGTTTAACAAAAGCAGCTAAAGCTCAAGTGAGGTAGATAGAAAAGAGA
GGGGTCACCCACCAACAACCAACTGACCGAGCATACTCAATAAAACAATG
GTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGAGTTACTGTCCGT
TTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAGCTGATGCCAACT
TTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTTatAAGAGCTGAC
GGCCATGGGTGTATGGAAATATTGAAAggcgttttaaaattattaccACT
TGATATGTACGTTGAAGCACCTGTCATGTTAATGGATCCCACCGAAAGTG
ACAAAGTGAAAGGAATCAAAACTCCGATCTGGGAAGAATACAAAGCAGCA
GTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAACGATT
CGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTACAGGAG
AAAATGCACTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGTAAGCT
ATGATTTAACtgtttactcttaggtgccaaataaacggggggggggggtt
cgaataaacggggggacctaattaccggggggttggaaaatggaccttaa
aaaccctaaaaatggtcaaaatagactaaatttaggctttttagagaaaa
caaggaactttccttttggtagctgggaattttttcaaaaattaataaac
gggggggtcctaataaggtccggggggtttggaaaaaaatcgaataatta
acaagcggggggcccgtttatttggcacctaagagtatgcGTTAATAGAA
AGCACGATGCGTCATTTTGGCTTTTTTATCACCTACAACTCAAACGAACC
TTCTGTCCCCAAAGAGCCTTGTAAATTAGTTTTCATATCGAATACTCCAA
AAGAAATTAGATTGTCTTCCCCGTGCGTGATATTCGAATTTTCGAGACAA
ATGTGAAGTCAGCCCCGTTATCATGTTTGATTAAAAGTATACCAATTGTT
TGAAGAAGGAATAATTTATTTTNATCATGTTTGACTAAAAGTATACCAAT
TGTTTGAAGAAGGAATgatttattttgtaatttttacagGGAAAGTAATT
TGGACGAAAGGAGATTGTAactatttttttgtattttacgtTTTATAAAT
TTATTCAGAAAATTGGCTATTGAAGATTAAATACTTTAATACGTTACTGT
TTTTTACCTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00047118-protein

>TCONS_00047118-protein ID=TCONS_00047118-protein|Name=TCONS_00047118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MVMLKNIPRVLSPELLSVLARMGHGDEIVLADANFPSASTAKAGPELIRA
DGHGCMEILKGVLKLLPLDMYVEAPVMLMDPTESDKVKGIKTPIWEEYKA
AVNQSEGKNISVSLIERFEFYKRAEKAFAVVATGENALYGNIILKKGVL
Run BLAST on NCBI

transcript from alignment at scaffold_122:38249..42216+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047118 ID=TCONS_00047118|Name=TCONS_00047118|organism=Clytia hemisphaerica|type=transcript|length=3968bp|location=Sequence derived from alignment at scaffold_122:38249..42216+ (Clytia hemisphaerica)
ATCGTTTAACAAAAGCAGCTAAAGCTCAAGTGAGGTAGATAGAAAAGAGA
GGGGTCACCCACCAACAACCAACTGACCGAGCATAgtaagttttgatttt
tgtaatattttgaactCTTTTCTTGGGTTGATTTTTgagttaaatgaaaa
aataaaataaagaaaggaAAGCAGACAGCCAGACCAGACTTCTGTATTTT
GTATTTCCTTTCTTCCTTCTTTTTCTGCAAGTTTAACAAAAAGTTCTACC
ACAATAGGGCATGCGCCTTTTCTGTACTTCACAAGCAGTTACCTGCACAT
ATTTATTATATTGTTGCTCTTCTTCATTTCTTCCCCCCGTTTGGTCTCAG
AGTCTGGTCTGGCATCTGGTAAGGTAAacaacccgtttttgcctgtgTTT
CCTTAATaggaaaagttggtttttctagcttttcttaagttcgaACAGAA
TCCTCTCAAATTTTAACATACTCTtgctatagaccttttttcaaagacga
cgtcctgttgaataattatgtagtccagccataaaaacaatgatagagcc
atgcataattactgtatcatgcatattgtaataattatgcatggttttat
cattgtttttctgctggactacataattattcaacagggtggcctctttg
aaaaaaggtctatttatgATATGATACTACCCTGAAAAACTTTtcacctg
gctggtcattaaaatacaactacgcagctctgctcgcagctctactctac
catttttgttttgatttaactttgtattttaatgacaagccaggtctttt
atttgagggctatgcatgttagcctctactgatgcaagttacccaatctc
aagGTATATTACCGTAAGTGGTCCTTAAATCCGACAGCCCCTACTTTAAA
TCAGACCTCACAAATAACTGgctatatgaaaaaaattctatgtttacaaa
cattccctctccaagttgaacaataaactatattgcaaaaactctcgaaa
caaaacatctaacaagatgactaaaatgtcaagatgtcaattaaaatgtg
ataaaaaagtgtgagttgtaaaaataagtccCTCTATTATTCCGAAtccg
ttgctcgtgtttaaaacgttaacaattttgtaataaaaaaacatgttttg
tataagaagcaattattatgttatttggttcaattggttcagtgtatcaa
atctctcagtttagttgacactttggtatcttcgttgcatcacagcgaaa
ggttttttattttagtttgtatctttgaaagacctcATCGGAtataggca
gggctgtcggatttaggaccactcacggtattccTTCAATTTGTTACATA
AGCTTTCTGAACAAGTTTcgtttattcaattttaaaacagtACCATTATT
AATAGTCAGGTTGCTGTTGCTagaacatttttttagaaatctcagtgtga
agaatctaaaacctttttaaaactTGTTATGACATCAAAAGATCCAGAAA
CTTAtgaagtttgtttgttttcagttgTTCAAATGCATACACATCCATAT
TTTCCTTGGGACTTACACGaatgaaattaattaaaaaaatcccaacaaaa
aaaatatttaaaagtacAGTAAGTAATAATCGAAAGTTTTTTCGTTTTAA
GCTCAATAAAACAATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCAC
CCGAGTTACTGTCCGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTG
TTAGCTGATGCCAACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGA
ACTTGTAAGATATTCTTCAGAAAGTCTCAATGACAGAATAGAATATTCGA
TAGTGGCCATTAGTGTCTTTGCATTTTAGCTGCAATATATTTTTCCCAGA
TCAAAACTCTCTTTTGTCCTGGACTCGTACAACATTCTATAGTAGCCTTA
AGCTCTAGCTGAGTCTCAATGGAAGATTTAGAATACTattgtttttgtat
ttgaattctCATTATAAAAACGACGTTATTCAACTTATAATTGACAAAAG
TTATTTCTTTTATCTCTAAGATTTATAAAAAGAGATTCTGATCTATCCTC
AAGTAAAATCGTGTTTTTTATGTGTCCAAAATAAGTTAGCTTTATTCAAA
ATCAATTCGCTTTAAgtgttttgttttgcttgccatttttcaaccaatag
gCTTCAAATATAACAAATTATAAACCTTTGAAAAGATTATTCATAGCACT
ataattgaagatgaaaaattaagaagaaaaatgaagtccATTTTTAGTAC
TAAGGTACTTTGAAGCTTCCTGATTTCAGATATACAACTATTTTTCAAAT
AGAATTGTTACATACGCAATTATAGATCTTAAAAGGTTGCCTGTTGGAGT
AAAAGAAAAGCTACAAAAAACGAGGCTTTTCGACTCCAAAgagctactct
cgggtacttaatagccgccccccccccgctaattaatttttcgaaaattt
tccacccaggacattcttattccaacccccccgcttattaatttttggga
aaatgtttttgaaagttcccttttttgtcctaattcagctgtattagcct
ccttttcaaaagttttccacccaggacatttttattccaacccccccgct
tattaggttttgagattttttccaacccccccccctgcttattccaacct
ccccccccggctattaggtacccgagagtacttttCAGAGTCTGTAAGCC
TCAATGCAAGAACTAACtacataataaataaataagtaaataaatttATT
GTCTTAATTTTCTAACGTTGttagaatattttttctcaataattatagtg
ctctgaattatcttttatGATTTGTTATATTTGAATCAGTTGTTGgaaaa
tggcaagcaaaacaaaaagtagtgcatatttaaaacattttagatAAGAG
CTGACGGCCATGGGTGTATGGAAATATTGAAAggcgttttaaaattatta
ccACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGATCCCACCGA
AAGTGACAAAGTGAAAGGAATCAAAACTCCGATCTGGGAAGAATACAAAG
CAGCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAA
CGATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTAC
AGGAGAAAATGCACTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGT
AAGCTATGATTTAACtgtttactcttaggtgccaaataaacggggggggg
gggttcgaataaacggggggacctaattaccggggggttggaaaatggac
cttaaaaaccctaaaaatggtcaaaatagactaaatttaggctttttaga
gaaaacaaggaactttccttttggtagctgggaattttttcaaaaattaa
taaacgggggggtcctaataaggtccggggggtttggaaaaaaatcgaat
aattaacaagcggggggcccgtttatttggcacctaagagtatgcGTTAA
TAGAAAGCACGATGCGTCATTTTGGCTTTTTTATCACCTACAACTCAAAC
GAACCTTCTGTCCCCAAAGAGCCTTGTAAATTAGTTTTCATATCGAATAC
TCCAAAAGAAATTAGATTGTCTTCCCCGTGCGTGATATTCGAATTTTCGA
GACAAATGTGAAGTCAGCCCCGTTATCATGTTTGATTAAAAGTATACCAA
TTGTTTGAAGAAGGAATAATTTATTTTNATCATGTTTGACTAAAAGTATA
CCAATTGTTTGAAGAAGGAATgatttattttgtaatttttacagGGAAAG
TAATTTGGACGAAAGGAGATTGTAactatttttttgtattttacgtTTTA
TAAATTTATTCAGAAAATTGGCTATTGAAGATTAAATACTTTAATACGTT
ACTGTTTTTTACCTCCAC

Coding sequence (CDS) from alignment at scaffold_122:38249..42216+

>TCONS_00047118 ID=TCONS_00047118|Name=TCONS_00047118|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_122:38249..42216+ (Clytia hemisphaerica)
ATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGAGTTACTGTC
CGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAGCTGATGCCA
ACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTTatAAGAGCT
GACGGCCATGGGTGTATGGAAATATTGAAAggcgttttaaaattattacc
ACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGATCCCACCGAAA
GTGACAAAGTGAAAGGAATCAAAACTCCGATCTGGGAAGAATACAAAGCA
GCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAACG
ATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTACAG
GAGAAAATGCACTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGTAA
ATGGTAATGTTAAAGAATATCCCTCGAGTTTTGTCACCCGAGTTACTGTC
CGTTTTGGCAAGAATGGGTCATGGTGATGAAATTGTGTTAGCTGATGCCA
ACTTTCCAAGCGCTTCAACCGCTAAAGCTGGTCCTGAACTTatAAGAGCT
GACGGCCATGGGTGTATGGAAATATTGAAAggcgttttaaaattattacc
ACTTGATATGTACGTTGAAGCACCTGTCATGTTAATGGATCCCACCGAAA
GTGACAAAGTGAAAGGAATCAAAACTCCGATCTGGGAAGAATACAAAGCA
GCAGTCAATCAATCAGaagggaaaaatatttcagtttcCTTAATTGAACG
ATTCGAATTTTATAAACGCGCAGAAAAAGCATTTGCAGTCGTTGCTACAG
GAGAAAATGCACTTTATGGGAATATTATCTTAAAGAAAGGTGTTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030043XLOC_030043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047118-proteinTCONS_00047118-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047118-exon-scaffold_122-1491911889:38249..38333TCONS_00047118-exon-scaffold_122-1491911889:38249..38333Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1510915933:38249..38333TCONS_00047118-exon-scaffold_122-1510915933:38249..38333Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1575043694:38249..38333TCONS_00047118-exon-scaffold_122-1575043694:38249..38333Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1491911889:39900..40052TCONS_00047118-exon-scaffold_122-1491911889:39900..40052Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1510915933:39900..40052TCONS_00047118-exon-scaffold_122-1510915933:39900..40052Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1575043694:39900..40052TCONS_00047118-exon-scaffold_122-1575043694:39900..40052Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1491911889:41192..42216TCONS_00047118-exon-scaffold_122-1491911889:41192..42216Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1510915933:41192..42216TCONS_00047118-exon-scaffold_122-1510915933:41192..42216Clytia hemisphaericaexon
TCONS_00047118-exon-scaffold_122-1575043694:41192..42216TCONS_00047118-exon-scaffold_122-1575043694:41192..42216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_122supercontigscaffold_122:38249..42216 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0276	15.4555	4.59344	2.92746	2.4461	2.17505	4.99296	7.82718	13.2463	13.2134	10.5021	15.5724	10.4011	14.3287	14.0674	15.8578	12.9548	13.859	6.29396	6.61726	7.69594	8.28154	10.4285	8.73129	11.6669	14.2441	10.5421	13.4232	14.343	12.375
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007721RbsD_FucU
IPR023750RbsD-like
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
GO:0048029monosaccharide binding
Vocabulary: Biological Process
TermDefinition
GO:0005996monosaccharide metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005996 monosaccharide metabolic process
molecular_function GO:0016853 isomerase activity
molecular_function GO:0048029 monosaccharide binding
Blast
[Close]
BLAST of TCONS_00047118 vs. Swiss-Prot (Human)
Match: FUCM (Fucose mutarotase OS=Homo sapiens GN=FUOM PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-56
Identity = 91/149 (61.07%), Postives = 118/149 (79.19%), Query Frame = 2 
Query:   98 MVMLKNIPRVLSPELLSVLARMGHGDEIVLADANFPSASTAKAGPELIRADGHGCMEILKGVLKLLPLDMYVEAPVMLMDPTESDKVKGIKTPIWEEYKAAVNQSEGKNISVSLIERFEFYKRAEKAFAVVATGENALYGNIILKKGVL 544
            MV LK +P +LSPELL  LARMGHGDEIVLAD NFP++S  + GP  IRADG G  ++L+ VLKLLPLD YVE+P  +M+   SDK +G++TP+W EY++ + ++ G   +++ IERFEFY+RA+KAFAVVATGE ALYGN+IL+KGVL
Sbjct:    1 MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPMEIRADGLGIPQLLEAVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRA-GCVRALAKIERFEFYERAKKAFAVVATGETALYGNLILRKGVL 148
The following BLAST results are available for this feature:
BLAST of TCONS_00047118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUCM1.839e-5661.07Fucose mutarotase OS=Homo sapiens GN=FUOM PE=1 SV=... [more]
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