TCONS_00049355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049355
Unique NameTCONS_00049355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049355 ID=TCONS_00049355|Name=TCONS_00049355|organism=Clytia hemisphaerica|type=transcript|length=1082bp
caataaaaaacaaatatcaaatatttgaaacatGTACCGTAATCAATATG
ATCATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatttttcaaattgaa
tatgCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTGGTCTCAAATC
TAATGATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCGTCCGAACTTT
CATCATATCAAAGGAAGATCATTTCAGTGGATGACCATGTCGCAGCCAGT
ATTGCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAATTTTATGCAAGA
CGAATGTTTGAATTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCA
GACTTGTCACCGCCACAGCTGAAAAAATGCAAAAACCTACCAAAGTATAC
GGAAGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTTACGATAGTCA
AGGAAGTCACATTTATCAACTGTGTCCATCAGCAAACTATTTCGATTGTA
AATCCATGGCAATCGGTGCAAGATCACAGaGTGCAAGAACATACTTAGAA
CGAAACTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAATCATCGCACA
TGGCTTAAGATCGCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAA
CTAAGAATTGCACCATAGCAGTTGTAGGGAAAGACAAGAAATTGACTTTG
TTGGATAATGAAGATGTCGCTCCATTTTTGGCATTGATTGATCAAAGCAA
AGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCTA
TGGAACAAGACTCAACTTCGCAAGAAGAAGCTATGGAAACATAATGGGAA
TGCATTATTCGCTAACAAACCAATCAAAAGACCTTATTATGAAAGTTATA
TGAACGATGTGAACTCGATTATGAACAGTACATCCACAGTGTACTTAAAC
ATGAAATGATGGGGAATCATGTTAATTTCtctagcaaaaaaaatgttgaa
ataaattttgtatttaTAATATGCCAGTCATTATGATGTTGGAAAGATAA
AGAGCATCATGTGAAATTATTCTTCGGACAGA
Run BLAST on NCBI

protein sequence of TCONS_00049355-protein

>TCONS_00049355-protein ID=TCONS_00049355-protein|Name=TCONS_00049355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MYRNQYDHDVSIWSPQGRIFQIEYAMEAVKQGSATVGLKSNDYAVLVALK
RSSSELSSYQRKIISVDDHVAASIAGLTSDGRLLSNFMQDECLNSRYVYE
EALPVSRLVTATAEKMQKPTKVYGRRPFGVGILVAGYDSQGSHIYQLCPS
ANYFDCKSMAIGARSQSARTYLERNLDKFQESSYEEIIAHGLRSLRECLP
NEQELTTKNCTIAVVGKDKKLTLLDNEDVAPFLALIDQSKDKKDDKTEDA
TAAPESMEQDSTSQEEAMET
Run BLAST on NCBI

transcript from alignment at scaffold_155:33588..38897+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049355 ID=TCONS_00049355|Name=TCONS_00049355|organism=Clytia hemisphaerica|type=transcript|length=5310bp|location=Sequence derived from alignment at scaffold_155:33588..38897+ (Clytia hemisphaerica)
caataaaaaacaaatatcaaatatttgaaacatGGTAAGTAAAGTTTcat
attcatttttattattttatatcacTTTACACAGGGTGTTTTTAGGCACT
TGTTTACCACCTTCATTCTGTGGCAAAAAGTTAATTTCAAATGGAGTTTT
CTAAAATGGAGAAATGGGTATATGCAATCGAGTCTAACAATCAGcaattg
tttttttcaaaatcaagttCGAAATTTTCAGGCTATTACTGATGAATCAA
AAAACCTATTTTCGACATTTAAAGGGCAAACATTTTCTTCATCACCCAAC
CATGTTGGGTGACCACTGCATtgagacttttttcaaactatAACAATGTT
AAGGAAAATTGCTTGTAAAATACCCTGCTTTAGATAACATAATATAATTT
TCCAGACAATCTATTATAAACAATTGTTCAGCTTTGGATATACAGAAATA
GAATGTTTAAGTTTGCTGAAGAGCCCTCTTCAATGTCTACtcattttcaa
caaattttgatACAATCCTTAACGTGATTCATGGATAGCTGTAAATTCAA
GTCCATGcatattttataaatttcaaatctatTAATTTCAGTACCGTAAT
CAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGTATGTCTTctgtt
tgttttaaattttaaagcTCTTATAGAATTATATTAAGGTTTCAAATTac
tgaattaaaaaaataaaattaaacagTATAGCATAGAATGCACCCCCTAA
GCTTAACCCCTCCTGAAAAGTCACTCTGcattctatgtttagtttttttt
cgTTCATTTTCAGGGGcgtatttttcaaattgaatatgCAATGGAAGCTG
TGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTT
TTGGTTGCCTTAAAGGTAAGAAATTGATGATATATAACATGTTTCTTTTT
TACCTTCTTTTACCTGAATGCCAATATTAATAATGCGTTGCTTGTTAATG
CCATCTGTAAACTACAAAAGGAAAAGTAGTTTCTAAGTCAACTTAAAAGT
ACTAATATGACTTAGTATATAGTAGCTCCCCCCTGAGCGCAAGCTATGGA
TTAGTGCCTTTTTCATCGATTACTGGGGATAATTGGGGTGCAAATCCCAT
GTCAGGCAGTTATTATCTAAACAGTGTAAGAGACTAAACCCTTTTGAGAA
TTGAGTCCCCAGTTCAGTTTGTAAAAAATTAGGTCGCCCTAGCTCAGTAG
GTGGCCCCTGGCCAAAGTTTACCTGTAGGTAACCCCCTCACAGCCATGGG
GGGAGTGAAGCTAAGATGcattctttttttctattttgatttttttttca
agattattGTTTATCATTAGACTAACAAGACTTTATCATTTCTTTCCTCA
GAGATCATCGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGG
ATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTA
TTAAGGTAGGCTAATATTGTGTTTGCAATGGAGCCATTTCTCCGCAAGCG
CCTCGGtggaaattacaaaaatgataCATCAATCTATGTTTAATTTTAAT
CAGATCgactcaaaaagtaaaaaacctCTATGCTATTgatgaagtttttc
tttttcacctATTTTCAGTAATTTCATGCAAGTCAAAATCACGTAAAAAT
GATACAAGGCAATCTGTTTTTTAATTGCATCAattcatattcatgatatg
caccattgcaatgtcttccatggacccaacagctgattgtttgaaagtga
cgtattgactgattttacgttacttacaaccaatcagctgttgggtccgt
gatgtaatgttagaagacattgcaatggttaAATAAACATGTTTTACCGT
TTAAATACTTTGCTATGGATGAAATATCCAGAAATATCTTTTTTGAAGCT
TCCTTTACTTCTCTGCTTTTTAGTAATTTTATGCAAGACGAATGTTTGAA
TTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCG
CCACAGCTGAAAGTAAGATCAAAATTCATCACAAAATGCAATGTCGAATC
GAATTCAGTGAGAGGATGTAATGTTTATTCCTATTGATTTAAAATCTATC
AGTATTTCATTGACTTATTGCTTTGGCTGTGAATCTTTGGATAATCAATA
TTCTTCTNCTGTAATGTCGAATCGAAATTCAGTGAGAGGATGTAATGTTT
ATTCctattgattttttaaaaatctatcagTATTTCATTGACTTATTGCT
TTGGCTGTGAATCTTTGGATAATTAATATTCTTATTATTTTAGAAATGCA
AAAACCTACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCG
TTGCAGGTTACGATGTATGACAAGATAATAACTTTTAACCTTTTTTATGT
TGATATTTTCGGTTTaatgttttgtcttttttgatGTTTAGAAACCCTAC
TTCTTAGGGTAATTCTTAGCTCGACGGCATTTGCGTCGGCAATAGCCGAA
TACCGACGTGAATTAGAATTGCTGAGCTACTTCTTTATTGTTTGTTATCA
TTGAGTTTTACGCACAATTGTTACATTTCGCATCAGGGATGACACTATAT
TTGAAAGATAAGGCTGTGAACCAAAACAACCAACTAAGAAAGGTTTTTAT
ACCCTTGATTAATCGAACacaaattctttgaatttcttcccACCAGCGAC
CCGAAATTTATGTGATAAGTAAGCTCTTTGAATACTTTTAAGAACATTAA
AACGTTATTTTAATTATATTTCCACTTATAGAGTCAAGGAAGTCACATTT
ATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCCATGGCAATC
GGTGCAAGATCACAGGTAAGTCTGCGAAATGCACATCATCTTATTTCAAG
TTCAATTTCTCTTCAAATTGCTTAGCTGAGTTATTGATTGATAAAATACC
TCTAATATTCTGGTctttaaaattgtcattaaagcaaccaatttgtttat
tttgcagaGTGCAAGAACATACTTAGAACGAAACTTGGACAAATTTCAAG
AGTGTAAGTTGCTTTACTTTTATATCCCAAGATTAAATCTTGTTCGATTT
TCTGTGAAGGTTATTTTTCCGATGTTAATGGCTaatatcttttatatttt
tgtatctATTTTATTTAGAGGAGCTATTGATTTTTACTGgtgaaattttc
tctttttttccagCCTCTTACGAAGAAATCATCGCACATGGCTTAAGATC
GCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAACTAAGGTAttaa
aattatgttaaaaaattgAGTTGGACTGTCAGTTTTAAATTGTTGTGGAA
ATTTTACGTGAAATTCTGAACACTATTGTCTCAAAAGATCAGTGCAGCCT
TTTTAGTGTTTCTTTGCTAATATAATTTGGTAATAAATGTCAGTTTCAAC
TATACAGTCTGTGAAGAAGCCTTTCTTCTAATGATCGTAGAACTCTAATT
AGGATCTGTTCATTGAAACGTTTAAGAACTGAGCTTGCGTGGATACGGTA
TATATTGATATTTCTGAAGTTCTTCAATGTCAAGCAGTGTTAAAAGCTTT
CCTTCTCAGTGTGCTAACATTTGCTAataatttgctgtgtaaaatccatt
ttccgtctcgGACGAAAGACCTTGCTTTGACCGGTCATGTCAAGTGAAAC
CGAGTAAAATAcacaactttttttcttcactcttTAGAATTGCACCATAG
CAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGATGTC
GCTCCATTTGTATCTTTTCATTTATCTAAAATATGAATTAACTATTCAAG
TAACATCACATGGTAGCCTCTAAATTTTAAATGTGTACTTTTGGAGACGC
TTATTTCAGAAGCGCTATGTAGTAATCTTCATTaggttttcatttcaaaa
tccttggataaatttttaataattctaTGGATTAGGGGCTCCTGCGTTTG
TTATGTCCATCCCAATTCGTACTTAAAATAGTTTTAGTCCTTCATTTAAC
GAATGATATTTTCGCCTACTTGAAGTGAGGTTTTAGTATGTTTTATCCTC
CTTAACTTGAATGAACTGATGTATACAGTTGGCATTGATTGATCAAAGCA
AAGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCT
ATGGAACAAGACTCAGTAAGGAGAATAGCTTTGAATGTATAAAGTCTCGC
AAAATTGTAGAGTCGCATTTCAcgaattctttttttttgcatagTATGGA
AAGGGGTCCAGCCACCAGCAATTTTTAGGGGTGGGGTGAGCTAAAATAGC
CCCCAGCTAAATTTTTAGAATGCCGTCCCCACTTCcaaaaactgaaaatc
aaaaagtattttaaacaaaattgtCAACAAGATCATCTAAATAAGTTTTT
TCCCAATGACAAAATATCAACATGATGCattgtgaaaattgaaaatcaat
taaGGTTGTAAGCTTAGCCCCtgcatttttatgaaaagtaaccccaaacg
aaaaaaagttttagGCCCCCCTAAGCTCAGGATGGGGGTGCATTCTATGT
TTTGGAAGAAAGATTTGTTGACTTGAacaaaaatgaggaaaaagaTTTCT
CGTTCGACAGAAACTTTCGCATAGAAGTGAAAAAAATGCGATAGTATCTG
CCTTGAAAGGAATAATAGCCATAAAGTTATCAACATAAGACTGTCGGACT
GTCACTCTTACTTGAAGTTTTTGCATTCCAGCTGTTTCTGACTAGTAACC
AGTTAGCCTCTGTTTGAACAGGAACTCTAAGAGGTCTTAATGTTAAGCTT
TTATTGCCAGCTtgatttttgatctttttggggatttctcattgtcaatt
ttcttatttttttcaatatttataatttattgattttttgatcAGAGGAA
AAAGAGCAACAGTGTCATCACTCGATTCATTCTTCATTTCAGACTTCGCA
AGAAGAAGCTATGGAAACATAATGGGAATGCATTATTCGCTAACAAACCA
ATCAAAAGACCTTATTATGAAAGTTATATGAACGATGTGAACTCGATTAT
GAACAGTACATCCACAGTGTACTTAAACATGAAATGATGGGGAATCATGT
TAATTTCtctagcaaaaaaaatgttgaaataaattttgtatttaTAATAT
GCCAGTCATTATGATGTTGGAAAGATAAAGAGCATCATGTGAAATTATTC
TTCGGACAGA

Coding sequence (CDS) from alignment at scaffold_155:33588..38897+

>TCONS_00049355 ID=TCONS_00049355|Name=TCONS_00049355|organism=Clytia hemisphaerica|type=CDS|length=9756bp|location=Sequence derived from alignment at scaffold_155:33588..38897+ (Clytia hemisphaerica)
atGTACCGTAATCAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGG
GcgtatttttcaaattgaatatgCAATGGAAGCTGTGAAACAAGGAAGTG
CTACTGTTGGTCTCAAATCTAATGATTATGCTGTTTTGGTTGCCTTAAAG
AGATCATCGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGGA
TGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTAT
TAAGTAATTTTATGCAAGACGAATGTTTGAATTCTCGATACGTTTATGAA
GAAGCTCTACCAGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAATGCA
AAAACCTACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCG
TTGCAGGTTACGATAGTCAAGGAAGTCACATTTATCAACTGTGTCCATCA
GCAAACTATTTCGATTGTAAATCCATGGCAATCGGTGCAAGATCACAGaG
TGCAAGAACATACTTAGAACGAAACTTGGACAAATTTCAAGAGTCCTCTT
ACGAAGAAATCATCGCACATGGCTTAAGATCGCTTAGAGAATGTTTACCC
AACGAACAAGAATTAACAACTAAGAATTGCACCATAGCAGTTGTAGGGAA
AGACAAGAAATTGACTTTGTTGGATAATGAAGATGTCGCTCCATTTTTGG
CATTGATTGATCAAAGCAAAGACAAGAAAGACGACAAAACAGAAGATGCA
ACGGCCGCTCCCGAATCTATGGAACAAGACTCAACTTCGCAAGAAGAAGC
TATGGAAACATAAatGTACCGTAATCAATATGATCATGATGTCAGTATTT
GGAGTCCTCAGGGGcgtatttttcaaattgaatatgCAATGGAAGCTGTG
AAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTTTT
GGTTGCCTTAAAGAGATCATCGTCCGAACTTTCATCATATCAAAGGAAGA
TCATTTCAGTGGATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCT
GATGGTCGCTTATTAAGTAATTTTATGCAAGACGAATGTTTGAATTCTCG
ATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCGCCACAG
CTGAAAAAATGCAAAAACCTACCAAAGTATACGGAAGACGTCCATTTGGC
GTCGGAATTCTCGTTGCAGGTTACGATAGTCAAGGAAGTCACATTTATCA
ACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCCATGGCAATCGGTG
CAAGATCACAGaGTGCAAGAACATACTTAGAACGAAACTTGGACAAATTT
CAAGAGTCCTCTTACGAAGAAATCATCGCACATGGCTTAAGATCGCTTAG
AGAATGTTTACCCAACGAACAAGAATTAACAACTAAGAATTGCACCATAG
CAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGATGTC
GCTCCATTTTTGGCATTGATTGATCAAAGCAAAGACAAGAAAGACGACAA
AACAGAAGATGCAACGGCCGCTCCCGAATCTATGGAACAAGACTCAACTT
CGCAAGAAGAAGCTATGGAAACATAAatGTACCGTAATCAATATGATCAT
GATGTCAGTATTTGGAGTCCTCAGGGGcgtatttttcaaattgaatatgC
AATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATG
ATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCGTCCGAACTTTCATCA
TATCAAAGGAAGATCATTTCAGTGGATGACCATGTCGCAGCCAGTATTGC
AGGTCTTACCTCTGATGGTCGCTTATTAAGTAATTTTATGCAAGACGAAT
GTTTGAATTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTT
GTCACCGCCACAGCTGAAAAAATGCAAAAACCTACCAAAGTATACGGAAG
ACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTTACGATAGTCAAGGAA
GTCACATTTATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCC
ATGGCAATCGGTGCAAGATCACAGaGTGCAAGAACATACTTAGAACGAAA
CTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAATCATCGCACATGGCT
TAAGATCGCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAACTAAG
AATTGCACCATAGCAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGA
TAATGAAGATGTCGCTCCATTTTTGGCATTGATTGATCAAAGCAAAGACA
AGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCTATGGAA
CAAGACTCAACTTCGCAAGAAGAAGCTATGGAAACATAAatGTACCGTAA
TCAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatttttc
aaattgaatatgCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTGGT
CTCAAATCTAATGATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCGTC
CGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGGATGACCATGTCG
CAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAATTTT
ATGCAAGACGAATGTTTGAATTCTCGATACGTTTATGAAGAAGCTCTACC
AGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAATGCAAAAACCTACCA
AAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTTAC
GATAGTCAAGGAAGTCACATTTATCAACTGTGTCCATCAGCAAACTATTT
CGATTGTAAATCCATGGCAATCGGTGCAAGATCACAGaGTGCAAGAACAT
ACTTAGAACGAAACTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAATC
ATCGCACATGGCTTAAGATCGCTTAGAGAATGTTTACCCAACGAACAAGA
ATTAACAACTAAGAATTGCACCATAGCAGTTGTAGGGAAAGACAAGAAAT
TGACTTTGTTGGATAATGAAGATGTCGCTCCATTTTTGGCATTGATTGAT
CAAAGCAAAGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCC
CGAATCTATGGAACAAGACTCAACTTCGCAAGAAGAAGCTATGGAAACAT
AAatGTACCGTAATCAATATGATCATGATGTCAGTATTTGGAGTCCTCAG
GGGcgtatttttcaaattgaatatgCAATGGAAGCTGTGAAACAAGGAAG
TGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTTTTGGTTGCCTTAA
AGAGATCATCGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTG
GATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTT
ATTAAGTAATTTTATGCAAGACGAATGTTTGAATTCTCGATACGTTTATG
AAGAAGCTCTACCAGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAATG
CAAAAACCTACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCT
CGTTGCAGGTTACGATAGTCAAGGAAGTCACATTTATCAACTGTGTCCAT
CAGCAAACTATTTCGATTGTAAATCCATGGCAATCGGTGCAAGATCACAG
aGTGCAAGAACATACTTAGAACGAAACTTGGACAAATTTCAAGAGTCCTC
TTACGAAGAAATCATCGCACATGGCTTAAGATCGCTTAGAGAATGTTTAC
CCAACGAACAAGAATTAACAACTAAGAATTGCACCATAGCAGTTGTAGGG
AAAGACAAGAAATTGACTTTGTTGGATAATGAAGATGTCGCTCCATTTTT
GGCATTGATTGATCAAAGCAAAGACAAGAAAGACGACAAAACAGAAGATG
CAACGGCCGCTCCCGAATCTATGGAACAAGACTCAACTTCGCAAGAAGAA
GCTATGGAAACATAAatGTACCGTAATCAATATGATCATGATGTCAGTAT
TTGGAGTCCTCAGGGGcgtatttttcaaattgaatatgCAATGGAAGCTG
TGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTT
TTGGTTGCCTTAAAGAGATCATCGTCCGAACTTTCATCATATCAAAGGAA
GATCATTTCAGTGGATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCT
CTGATGGTCGCTTATTAAGTAATTTTATGCAAGACGAATGTTTGAATTCT
CGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCGCCAC
AGCTGAAAAAATGCAAAAACCTACCAAAGTATACGGAAGACGTCCATTTG
GCGTCGGAATTCTCGTTGCAGGTTACGATAGTCAAGGAAGTCACATTTAT
CAACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCCATGGCAATCGG
TGCAAGATCACAGaGTGCAAGAACATACTTAGAACGAAACTTGGACAAAT
TTCAAGAGTCCTCTTACGAAGAAATCATCGCACATGGCTTAAGATCGCTT
AGAGAATGTTTACCCAACGAACAAGAATTAACAACTAAGAATTGCACCAT
AGCAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGATG
TCGCTCCATTTTTGGCATTGATTGATCAAAGCAAAGACAAGAAAGACGAC
AAAACAGAAGATGCAACGGCCGCTCCCGAATCTATGGAACAAGACTCAAC
TTCGCAAGAAGAAGCTATGGAAACATAAatGTACCGTAATCAATATGATC
ATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatttttcaaattgaatat
gCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAA
TGATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCGTCCGAACTTTCAT
CATATCAAAGGAAGATCATTTCAGTGGATGACCATGTCGCAGCCAGTATT
GCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAATTTTATGCAAGACGA
ATGTTTGAATTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGAC
TTGTCACCGCCACAGCTGAAAAAATGCAAAAACCTACCAAAGTATACGGA
AGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTTACGATAGTCAAGG
AAGTCACATTTATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAAAT
CCATGGCAATCGGTGCAAGATCACAGaGTGCAAGAACATACTTAGAACGA
AACTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAATCATCGCACATGG
CTTAAGATCGCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAACTA
AGAATTGCACCATAGCAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTG
GATAATGAAGATGTCGCTCCATTTTTGGCATTGATTGATCAAAGCAAAGA
CAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCTATGG
AACAAGACTCAACTTCGCAAGAAGAAGCTATGGAAACATAAatGTACCGT
AATCAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatttt
tcaaattgaatatgCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTG
GTCTCAAATCTAATGATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCG
TCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGGATGACCATGT
CGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAATT
TTATGCAAGACGAATGTTTGAATTCTCGATACGTTTATGAAGAAGCTCTA
CCAGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAATGCAAAAACCTAC
CAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTT
ACGATAGTCAAGGAAGTCACATTTATCAACTGTGTCCATCAGCAAACTAT
TTCGATTGTAAATCCATGGCAATCGGTGCAAGATCACAGaGTGCAAGAAC
ATACTTAGAACGAAACTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAA
TCATCGCACATGGCTTAAGATCGCTTAGAGAATGTTTACCCAACGAACAA
GAATTAACAACTAAGAATTGCACCATAGCAGTTGTAGGGAAAGACAAGAA
ATTGACTTTGTTGGATAATGAAGATGTCGCTCCATTTTTGGCATTGATTG
ATCAAAGCAAAGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCT
CCCGAATCTATGGAACAAGACTCAACTTCGCAAGAAGAAGCTATGGAAAC
ATAAatGTACCGTAATCAATATGATCATGATGTCAGTATTTGGAGTCCTC
AGGGGcgtatttttcaaattgaatatgCAATGGAAGCTGTGAAACAAGGA
AGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTTTTGGTTGCCTT
AAAGAGATCATCGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAG
TGGATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGC
TTATTAAGTAATTTTATGCAAGACGAATGTTTGAATTCTCGATACGTTTA
TGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAA
TGCAAAAACCTACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATT
CTCGTTGCAGGTTACGATAGTCAAGGAAGTCACATTTATCAACTGTGTCC
ATCAGCAAACTATTTCGATTGTAAATCCATGGCAATCGGTGCAAGATCAC
AGaGTGCAAGAACATACTTAGAACGAAACTTGGACAAATTTCAAGAGTCC
TCTTACGAAGAAATCATCGCACATGGCTTAAGATCGCTTAGAGAATGTTT
ACCCAACGAACAAGAATTAACAACTAAGAATTGCACCATAGCAGTTGTAG
GGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGATGTCGCTCCATTT
TTGGCATTGATTGATCAAAGCAAAGACAAGAAAGACGACAAAACAGAAGA
TGCAACGGCCGCTCCCGAATCTATGGAACAAGACTCAACTTCGCAAGAAG
AAGCTATGGAAACATAAatGTACCGTAATCAATATGATCATGATGTCAGT
ATTTGGAGTCCTCAGGGGcgtatttttcaaattgaatatgCAATGGAAGC
TGTGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTG
TTTTGGTTGCCTTAAAGAGATCATCGTCCGAACTTTCATCATATCAAAGG
AAGATCATTTCAGTGGATGACCATGTCGCAGCCAGTATTGCAGGTCTTAC
CTCTGATGGTCGCTTATTAAGTAATTTTATGCAAGACGAATGTTTGAATT
CTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCGCC
ACAGCTGAAAAAATGCAAAAACCTACCAAAGTATACGGAAGACGTCCATT
TGGCGTCGGAATTCTCGTTGCAGGTTACGATAGTCAAGGAAGTCACATTT
ATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCCATGGCAATC
GGTGCAAGATCACAGaGTGCAAGAACATACTTAGAACGAAACTTGGACAA
ATTTCAAGAGTCCTCTTACGAAGAAATCATCGCACATGGCTTAAGATCGC
TTAGAGAATGTTTACCCAACGAACAAGAATTAACAACTAAGAATTGCACC
ATAGCAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGA
TGTCGCTCCATTTTTGGCATTGATTGATCAAAGCAAAGACAAGAAAGACG
ACAAAACAGAAGATGCAACGGCCGCTCCCGAATCTATGGAACAAGACTCA
ACTTCGCAAGAAGAAGCTATGGAAACATAAatGTACCGTAATCAATATGA
TCATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatttttcaaattgaat
atgCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCT
AATGATTATGCTGTTTTGGTTGCCTTAAAGAGATCATCGTCCGAACTTTC
ATCATATCAAAGGAAGATCATTTCAGTGGATGACCATGTCGCAGCCAGTA
TTGCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAATTTTATGCAAGAC
GAATGTTTGAATTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAG
ACTTGTCACCGCCACAGCTGAAAAAATGCAAAAACCTACCAAAGTATACG
GAAGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGGTTACGATAGTCAA
GGAAGTCACATTTATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAA
ATCCATGGCAATCGGTGCAAGATCACAGaGTGCAAGAACATACTTAGAAC
GAAACTTGGACAAATTTCAAGAGTCCTCTTACGAAGAAATCATCGCACAT
GGCTTAAGATCGCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAAC
TAAGAATTGCACCATAGCAGTTGTAGGGAAAGACAAGAAATTGACTTTGT
TGGATAATGAAGATGTCGCTCCATTTTTGGCATTGATTGATCAAAGCAAA
GACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCTAT
GGAACAAGACTCAACTTCGCAAGAAGAAGCTATGGAAACATAAatGTACC
GTAATCAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGGGcgtatt
tttcaaattgaatatgCAATGGAAGCTGTGAAACAAGGAAGTGCTACTGT
TGGTCTCAAATCTAATGATTATGCTGTTTTGGTTGCCTTAAAGAGATCAT
CGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGGATGACCAT
GTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTATTAAGTAA
TTTTATGCAAGACGAATGTTTGAATTCTCGATACGTTTATGAAGAAGCTC
TACCAGTTTCCAGACTTGTCACCGCCACAGCTGAAAAAATGCAAAAACCT
ACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCGTTGCAGG
TTACGATAGTCAAGGAAGTCACATTTATCAACTGTGTCCATCAGCAAACT
ATTTCGATTGTAAATCCATGGCAATCGGTGCAAGATCACAGaGTGCAAGA
ACATACTTAGAACGAAACTTGGACAAATTTCAAGAGTCCTCTTACGAAGA
AATCATCGCACATGGCTTAAGATCGCTTAGAGAATGTTTACCCAACGAAC
AAGAATTAACAACTAAGAATTGCACCATAGCAGTTGTAGGGAAAGACAAG
AAATTGACTTTGTTGGATAATGAAGATGTCGCTCCATTTTTGGCATTGAT
TGATCAAAGCAAAGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCG
CTCCCGAATCTATGGAACAAGACTCAACTTCGCAAGAAGAAGCTATGGAA
ACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031326XLOC_031326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049355-exon-scaffold_155-1491911889:33588..33621TCONS_00049355-exon-scaffold_155-1491911889:33588..33621Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:33588..33621TCONS_00049355-exon-scaffold_155-1510915933:33588..33621Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:33588..33621TCONS_00049355-exon-scaffold_155-1575043694:33588..33621Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:34179..34223TCONS_00049355-exon-scaffold_155-1491911889:34179..34223Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:34179..34223TCONS_00049355-exon-scaffold_155-1510915933:34179..34223Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:34179..34223TCONS_00049355-exon-scaffold_155-1575043694:34179..34223Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:34401..34502TCONS_00049355-exon-scaffold_155-1491911889:34401..34502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:34401..34502TCONS_00049355-exon-scaffold_155-1510915933:34401..34502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:34401..34502TCONS_00049355-exon-scaffold_155-1575043694:34401..34502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:34989..35092TCONS_00049355-exon-scaffold_155-1491911889:34989..35092Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:34989..35092TCONS_00049355-exon-scaffold_155-1510915933:34989..35092Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:34989..35092TCONS_00049355-exon-scaffold_155-1575043694:34989..35092Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:35561..35649TCONS_00049355-exon-scaffold_155-1491911889:35561..35649Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:35561..35649TCONS_00049355-exon-scaffold_155-1510915933:35561..35649Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:35561..35649TCONS_00049355-exon-scaffold_155-1575043694:35561..35649Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:35931..36001TCONS_00049355-exon-scaffold_155-1491911889:35931..36001Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:35931..36001TCONS_00049355-exon-scaffold_155-1510915933:35931..36001Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:35931..36001TCONS_00049355-exon-scaffold_155-1575043694:35931..36001Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:36419..36502TCONS_00049355-exon-scaffold_155-1491911889:36419..36502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:36419..36502TCONS_00049355-exon-scaffold_155-1510915933:36419..36502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:36419..36502TCONS_00049355-exon-scaffold_155-1575043694:36419..36502Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:36645..36690TCONS_00049355-exon-scaffold_155-1491911889:36645..36690Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:36645..36690TCONS_00049355-exon-scaffold_155-1510915933:36645..36690Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:36645..36690TCONS_00049355-exon-scaffold_155-1575043694:36645..36690Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:36851..36930TCONS_00049355-exon-scaffold_155-1491911889:36851..36930Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:36851..36930TCONS_00049355-exon-scaffold_155-1510915933:36851..36930Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:36851..36930TCONS_00049355-exon-scaffold_155-1575043694:36851..36930Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:37375..37446TCONS_00049355-exon-scaffold_155-1491911889:37375..37446Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:37375..37446TCONS_00049355-exon-scaffold_155-1510915933:37375..37446Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:37375..37446TCONS_00049355-exon-scaffold_155-1575043694:37375..37446Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:37766..37852TCONS_00049355-exon-scaffold_155-1491911889:37766..37852Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:37766..37852TCONS_00049355-exon-scaffold_155-1510915933:37766..37852Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:37766..37852TCONS_00049355-exon-scaffold_155-1575043694:37766..37852Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1491911889:38630..38897TCONS_00049355-exon-scaffold_155-1491911889:38630..38897Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1510915933:38630..38897TCONS_00049355-exon-scaffold_155-1510915933:38630..38897Clytia hemisphaericaexon
TCONS_00049355-exon-scaffold_155-1575043694:38630..38897TCONS_00049355-exon-scaffold_155-1575043694:38630..38897Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049355-proteinTCONS_00049355-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:33588..38897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
289.024	296.189	329.272	314.804	238.78	188.168	332.4	327.77	344.511	306.772	305.336	266.241	229.924	224.576	261.152	284.615	296.014	317.319	132.365	149.541	199.564	202.328	173.802	175.38	336.84	340.653	194.588	186.082	143.753	122.013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
Blast
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BLAST of TCONS_00049355 vs. Swiss-Prot (Human)
Match: PSA1 (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 1.460e-118
Identity = 154/238 (64.71%), Postives = 200/238 (84.03%), Query Frame = 2 
Query:   32 MYRNQYDHDVSIWSPQGRIFQIEYAMEAVKQGSATVGLKSNDYAVLVALKRSSSELSSYQRKIISVDDHVAASIAGLTSDGRLLSNFMQDECLNSRYVYEEALPVSRLVTATAEKMQKPTKVYGRRPFGVGILVAGYDSQGSHIYQLCPSANYFDCKSMAIGARSQSARTYLERNLDKFQESSYEEIIAHGLRSLRECLPNEQELTTKNCTIAVVGKDKKLTLLDNEDVAPFLALIDQ 745
            M+RNQYD+DV++WSPQGRI QIEYAMEAVKQGSATVGLKS  +AVLVALKR+ SEL+++Q+KI+ VD+H+  SIAGLT+D RLL NFM+ ECL+SR+V++  LPVSRLV+    K Q PT+ YGRRP+GVG+L+AGYD  G HI+Q CPSANYFDC++M+IGARSQSARTYLER++ +F E +  E++ HGLR+LRE LP EQ+LTTKN +I +VGKD + T+ D++DV+PFL  +++
Sbjct:    1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE 238
The following BLAST results are available for this feature:
BLAST of TCONS_00049355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA11.460e-11864.71Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
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