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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=transcript|length=1436bp
TACACATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGG
AGGAAACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGA
TTGTTTTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGG
TGTACTATACAACAAGTTCCAGTTGTGATACAACAAGGAGATAGGCGGGA
AAAGGTTCCAAGAGAGTTTGATCTTCCAGACACTCATTCTGAACGACgtc
taaaaacaacaaaaaccacAAGAAAAACTGTCCCAACGACTGAAGCCAAA
ACAACAGCTGAACCTGTGACAGATGAAAACATAGCTACAGACACACCAGC
ACCAGTTATCGATCAGAATCGCCAAACACAACTCCAGCGTCAACAACATT
TGAAAGAGTTTTGCCAAAACAATCGAAGATTACGGACGGAAAAGTTCAAA
ATCCGAGATTTCCATTTCATATATAGCGACAAAGCGTCCGCTCTATATTG
TTATATCCCAAAAGTGGCTTGCACTAATTGGAAAAAGGTGTTCCAAGTGA
TGGATGGGAATTATGAAACTCCTTTAGATATCAAGGGTAAagaaaaagtt
cattatttaaaGTTCAATACTTTTGAGAAAACGAATTTAACTGAAATCGA
GTGGCGTCGAAATTTGTATTATTCTTTCTTGTTCATACGGCACCCCTTTG
AAAGGGTTTTATCAGCATACAGAAATAAGTTTCAAGATCCCTACAACGAA
CAGTACCAACGTGTGTACGGCTCACGTGTTTTACGTCTGTTCCGTAAGAA
CCTTACGGAAGCCGAGTACAAAGCCGGGAAGAACGTCACTTTCCGAGAAT
TCGCCGATTATGTTATCCGAGTTCATACGAAACGAGAATTTGTAAACGAG
CATTGGGACACGATGCATAATTTATGCCACCCTTGTCGTGTGAAGTATGA
TTATATTGGCTCAATGGACTCACTTATCGAAGACTCGGAGACGGTTCTAA
AAGAGATTGGTTGGTATAATCgagtcaaatttcccgccaAAGCAACGGAT
AAATACAAGAATAAATTACCCACTTTGATGAAGCAATATTTTTCACAATT
ACCGAGAAATGTGACAATGAAGCTGTATAAAATTTATGAAGctgatttta
aagcttttggaTACTCGGCCGATGAATATCTGTAGGGATTAACAAATTAT
AGTTCAGTTTTTAATGCACATCTTAGATACTTTATTTTATTCCTTTAAGA
TATTTAGAGATTAGAAATTTCGAAAGCATTACAAAGAATTTACTCCACAC
AGAAATGGATGGTTGTAGTGATTGAGCCGATGATAACATGTATAACAGTT
TATATCAGAACCTTTGTGCAACTTTAAGCCTATTATAAATTTGCTTTTAT
ATCTATTcaacatcaaaatctaagagtaAATGAgat Run BLAST on NCBI protein sequence of TCONS_00049392-protein >TCONS_00049392-protein ID=TCONS_00049392-protein|Name=TCONS_00049392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MLDHHGGGNSKLQRLFLVLLGGVIVLLALEGLSMVRSEARCTIQQVPVVI
QQGDRREKVPREFDLPDTHSERRLKTTKTTRKTVPTTEAKTTAEPVTDEN
IATDTPAPVIDQNRQTQLQRQQHLKEFCQNNRRLRTEKFKIRDFHFIYSD
KASALYCYIPKVACTNWKKVFQVMDGNYETPLDIKGKEKVHYLKFNTFEK
TNLTEIEWRRNLYYSFLFIRHPFERVLSAYRNKFQDPYNEQYQRVYGSRV
LRLFRKNLTEAEYKAGKNVTFREFADYVIRVHTKREFVNEHWDTMHNLCH
PCRVKYDYIGSMDSLIEDSETVLKEIGWYNRVKFPAKATDKYKNKLPTLM
KQYFSQLPRNVTMKLYKIYEADFKAFGYSADEYL Run BLAST on NCBI transcript from alignment at scaffold_156:38583..42103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=transcript|length=3521bp|location=Sequence derived from alignment at scaffold_156:38583..42103+ (Clytia hemisphaerica)
TACACATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGG
AGGAAACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGA
TTGTTTTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGG
TGTACTATACAACAAGGTAGGAGAATGTTCTTTTGATctacacaccccct
tctcacggaCCTACTGGGACCCCTtgtcactggaaaaattggccaaaata
tcatcccgGGTGGAGAATTGTTCTCTAATATTGGCatccgctgaaaataa
tcaattggtatattatgctattttttccattcccactgaattttctggct
tgaaaacaatagaattcaaatccccagctataaaaaaatatgggaatatc
aattcccatcgtcctcaggccctttaagtggatttcttttcggaaaaaaa
gttgattctactaaccatttttgaaacatcattactctttcaaaaaaaat
tattttcaaaattgtttttcaacTTCATGACGAGAAAAGATAGAATTTTA
ATATGGTTACAATGATACCCATCAAGTCGGTGAAAAATTTACATAGAACT
TCATTAATGTGgaaaaaatcgctaaaaaatacataaaatggcGCCTCCGC
GGGATACAGCGTTGAGCTTTTCACCTCAACTTTTNATATGGTTACAATGA
TACCCATCAAGTCGGTGAAAAATTTACATAGAACTTCATTAATGTGgaaa
aaatcgctaaaaaatacataaaatggcGCCTCCGCGGGATACGGTGTTGA
GCTTTTCACCTCAACTTTTGTACACGAGTACTTCAAGCAGGTGGCTATTC
GAAACTACCTCAATAGTGAAAGATATATTTGTAGTCTTTTCTCTATGCAA
GAAAGAATTACCAAAACTTCAGTATTTTCACTTGAGTTCAAAGTTCAAGC
CGTATTTTAACTATATTGCACAATGAAACCCTCCACTACAGAGGTACTTT
CAATATACTTGCTCTCCTCCCTACTgccttggaaaataaaaatcacGAAT
TTCCAATTTTGTATCGCGCGGAATGTAGGAAAAACATAGTTTCTCCaaga
aaatactcaaaaaaaggAAGGTACAGGCCAATGGGTAAACCTGTTTGTTA
AAAATGGTTGATTGACAAGTAGATTCTTACGCAATAAGCCAGTaatcaaa
tttataaagaagACGCACTTCTTTCGTTCTTTTGAGCATAAACCAATTAG
CTCTCtctcttatttttttcttaaaagaatgtttacaagaataagatttc
gtttattaaataatcttttaaaagtgttgATTGATGCGTGAGGCTTTCTC
ATTGAACATACAACTCTGTCGGTGTTTTTTTAGACTGTACCAGAGAGATC
TTAGAAAAGAGGGAAAAGACAATTTTCGTTTCAGAACCACTTAAAGGGCC
TgagtctgttatttttacccccactggctgaaaatgTGTATCTACCCCTA
TTACTTTGAAACAGCCATGTCTCATATCGACACAAATTCAAGTCCAAGTT
CAATCTGTATTTAGAACCAGTTGCACCTCTTTTTGATCTTACTGATGGAC
ATTTGTGCGAATCattaaatcataaaaaaagcgGACAGcgagggactggg
ttcgaggtTAATCCGAGTGGGAAATGAGTTTCTGTATTTCGGCCAaaaga
ataaaatgaaatagGATTTGAAGAGCAAATTTAGTGCTTACGTCAAACTA
GCACACTAGCCCTTTAAGTAACTACCGATGTCGGCATTTGTATGTATTTC
AGAAAATAAAGTTAAATGTGATGGTAAATTCTCTTGTCGCTCATGttggc
atatgccgacatctggtaaataggtcgaaccttcttttttcctgacaaat
aggtcgaaccttaaaaaatacgcaCGTCATTAAAGGgcttttacatttga
aaatgaCCACCGATGTCTTCATTGCTTTCATTTCAGTTCCAGTTGTGATA
CAACAAGGAGATAGGCGGGAAAAGGTAAATTCTTGATTTGTATCAGCGTT
CCCAATTtcaacttttatttaaaagctgTTTCTATTTAGTACAAACTACG
CAGCAGTCGAGGTTATAATGAAAGATTATTGTGGAAATTTGTCCTAAGAA
GTGCACAGTGTAAAAAATCTCAGCCAAGCCCGCTATCCCGAAGTTTTAAG
CTCGTTTCGACAAACACTTATTACCATTTTAAGCTAGTCTGATCCAAATT
ATTTAAATTCCCGAACtcatatcaaaattttcttaTCAGGTTCCAAGAGA
GTTTGATCTTCCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaa
ccacAAGAAAAACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCT
GTGACAGATGAAAACATAGCTACAGACACACCAGCACCAGTTATCGATCA
GAATCGCCAAACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCC
AAAACAATCGAAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCAT
TTCATATATAGCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGT
GGCTTGCACTAATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATG
AAACTCCTTTAGATATCAAGGGTAAagaaaaagttcattatttaaaGTTC
AATACTTTTGAGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTT
GTATTATTCTTTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAG
CATACAGAAATAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTG
TACGGCTCACGTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGA
GTACAAAGCCGGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTA
TCCGAGTTCATACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATG
CATAATTTATGCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAAT
GGACTCACTTATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGT
ATAATCgagtcaaatttcccgccaAAGCAACGGATAAATACAAGAATAAA
TTACCCACTTTGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGAC
AATGAAGCTGTATAAAATTTATGAAGctgattttaaagcttttggaTACT
CGGCCGATGAATATCTGTAGGGATTAACAAATTATAGTTCAGTTTTTAAT
GCACATCTTAGATACTTTATTTTATTCCTTTAAGATATTTAGAGATTAGA
AATTTCGAAAGCATTACAAAGAATTTACTCCACACAGAAATGGATGGTTG
TAGTGATTGAGCCGATGATAACATGTATAACAGTTTATATCAGAACCTTT
GTGCAACTTTAAGCCTATTATAAATTTGCTTTTATATCTATTcaacatca
aaatctaagagtaAATGAgat Coding sequence (CDS) from alignment at scaffold_156:38583..42103+ >TCONS_00049392 ID=TCONS_00049392|Name=TCONS_00049392|organism=Clytia hemisphaerica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_156:38583..42103+ (Clytia hemisphaerica)
ATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGAGACTTTTCTT
GGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAAGGATTGTCGA
TGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCCAGTTGTGATA
CAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTGATCTTCCAGA
CACTCATTCTGAACGACgtctaaaaacaacaaaaaccacAAGAAAAACTG
TCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGACAGATGAAAAC
ATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATCGCCAAACACA
ACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAACAATCGAAGAT
TACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCATATATAGCGAC
AAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTTGCACTAATTG
GAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACTCCTTTAGATA
TCAAGGGTAAagaaaaagttcattatttaaaGTTCAATACTTTTGAGAAA
ACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATTATTCTTTCTT
GTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATACAGAAATAAGT
TTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGGCTCACGTGTT
TTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACAAAGCCGGGAA
GAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGAGTTCATACGA
AACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAATTTATGCCAC
CCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACTCACTTATCGA
AGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAATCgagtcaaat
ttcccgccaAAGCAACGGATAAATACAAGAATAAATTACCCACTTTGATG
AAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGAAGCTGTATAA
AATTTATGAAGctgattttaaagcttttggaTACTCGGCCGATGAATATC
TGTAGATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGAGACTT
TTCTTGGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAAGGATT
GTCGATGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCCAGTTG
TGATACAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTGATCTT
CCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaaccacAAGAAA
AACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGACAGATG
AAAACATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATCGCCAA
ACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAACAATCG
AAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCATATATA
GCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTTGCACT
AATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACTCCTTT
AGATATCAAGGGTAAagaaaaagttcattatttaaaGTTCAATACTTTTG
AGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATTATTCT
TTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATACAGAAA
TAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGGCTCAC
GTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACAAAGCC
GGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGAGTTCA
TACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAATTTAT
GCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACTCACTT
ATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAATCgagt
caaatttcccgccaAAGCAACGGATAAATACAAGAATAAATTACCCACTT
TGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGAAGCTG
TATAAAATTTATGAAGctgattttaaagcttttggaTACTCGGCCGATGA
ATATCTGTAGATGCTAGATCACCATGGAGGAGGAAACTCTAAATTACAGA
GACTTTTCTTGGTGCTTCTCGGTGGGGTGATTGTTTTGTTGGCATTAGAA
GGATTGTCGATGGTCAGAAGTGAAGCAAGGTGTACTATACAACAAGTTCC
AGTTGTGATACAACAAGGAGATAGGCGGGAAAAGGTTCCAAGAGAGTTTG
ATCTTCCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaaccacA
AGAAAAACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGAC
AGATGAAAACATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATC
GCCAAACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAAC
AATCGAAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCAT
ATATAGCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTT
GCACTAATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACT
CCTTTAGATATCAAGGGTAAagaaaaagttcattatttaaaGTTCAATAC
TTTTGAGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATT
ATTCTTTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATAC
AGAAATAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGG
CTCACGTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACA
AAGCCGGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGA
GTTCATACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAA
TTTATGCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACT
CACTTATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAAT
CgagtcaaatttcccgccaAAGCAACGGATAAATACAAGAATAAATTACC
CACTTTGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGA
AGCTGTATAAAATTTATGAAGctgattttaaagcttttggaTACTCGGCC
GATGAATATCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049392-exon-scaffold_156-1491911889:38583..38748 | TCONS_00049392-exon-scaffold_156-1491911889:38583..38748 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1510915933:38583..38748 | TCONS_00049392-exon-scaffold_156-1510915933:38583..38748 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1575043694:38583..38748 | TCONS_00049392-exon-scaffold_156-1575043694:38583..38748 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1491911889:40569..40606 | TCONS_00049392-exon-scaffold_156-1491911889:40569..40606 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1510915933:40569..40606 | TCONS_00049392-exon-scaffold_156-1510915933:40569..40606 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1575043694:40569..40606 | TCONS_00049392-exon-scaffold_156-1575043694:40569..40606 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1491911889:40872..42103 | TCONS_00049392-exon-scaffold_156-1491911889:40872..42103 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1510915933:40872..42103 | TCONS_00049392-exon-scaffold_156-1510915933:40872..42103 | Clytia hemisphaerica | exon |
| TCONS_00049392-exon-scaffold_156-1575043694:40872..42103 | TCONS_00049392-exon-scaffold_156-1575043694:40872..42103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_156 | supercontig | scaffold_156:38583..42103 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00049392 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.239e-54 Identity = 94/243 (38.68%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 463 HFIYSDKASALYCYIPKVACTNWKKVFQVMDG--NYETPLDIKGKEKVHYLKFNTFEKTNLTEIEWRRNLYYSFLFIRHPFERVLSAYRNKFQDPYNEQYQRVYGSRVLRLFRKNLTEAEYKAGKNVTFREFADYVIRVHTKR-EFVNEHWDTMHNLCHPCRVKYDYIGSMDSLIEDSETVLKEIGWYNRVKFPAKATDKYKNKLPTLMKQYFSQLPRNVTMKLYKIYEADFKAFGYSADEYL 1182
H + + +YCY+PKVACTNWK++ V+ G Y P++I E T + ++ EI R Y FLF+R PFER++SAYRNKF YN + + YG+++++ RKN T+ + G +V F EF Y+I HT+R E NEHW T+++LCHPC + YD +G ++L EDS VL+ G + +KFP A K + ++F + +LY++Y+ DF F YS YL
Sbjct: 109 HLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYA--KSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
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