TCONS_00049503 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049503
Unique Name	TCONS_00049503
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2123

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_16:196067..200979-
coding sequence from alignment at scaffold_16:196067..200979-

transcript sequence

>TCONS_00049503 ID=TCONS_00049503|Name=TCONS_00049503|organism=Clytia hemisphaerica|type=transcript|length=2123bp
acaaaaaatgctgaatcaTCACCATgagaatgctgaatcagcactTCCAC
CAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCAAGTGGAT
TTTATTGAGAGATATGACGcagaacaacaacaacagagGAATGAGAAAAC
CAGAGGTTTGATCGTACACGAAACTTTTTTGAAGCTGAAGGAGATGAACA
ATGAATTGGATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGTC
AATACAggagATACTGAAATCACACAGAAAATTCCGATTGTTGGAAAGAA
ATTATTAGATCTGGTTGATCTATATCGATTGGTTCAAAAACATGGTGGCT
TCGAAAAGGTTTGCCAGAAACGTCAATTAAGTGCTGTAGTCAGAGAATTG
AACTTGCCAAAGACGATCACCAGTGCAGCTAATACATTACGAAACCAatt
cgCACGATTTTTGTATCGTTTCGAATGTTATCAAAGAGGCGTCCGCGTCA
ACGAGCAATTTCTCCGTGAACAATTGGATAGTCCTAAACCAATCAAAGAA
CAGACTCCTCAAATCCGACCAATCAAACAAGAGGATTTTTATTACATGAA
CGAAAAACAGAAAACACGTGGTGTCGACGAAATGCATCCTGCTTTCCCAC
AATACTATGCGCAACACCCCGAAAATCCTTTGCTTCGTTTATCATCACAA
CCGTTGCCAAGAGATACAGTTGCTCAGCGATCGACCTCGATTTCACCACC
GGTTTTGAAACGGCCAAGAAGTACTGAGATTCAACGGAGGAAAAGTTATG
AAAACGAACTGGCTCAATTGGAAGAGGAGCGTTCAAAGTCTGTCGACGAA
ATCTACTCCATTGATCGATTGGTCAAACGCCGAAGACTGTCATATGAAAA
GGAGGGCGGTGAAAACATCAGGGCGGAGCGAATGCCATCAAAGGAAGAGG
AAGAGAGTGTATGGGCGGCCAATCATGAGCAATCGCGCCCACCATCAACA
TTTAAACGATCCCCTACCCCTGAAGATCGTAATGAGACTATTACGCATGA
CAAAGAGAGGTCTATTTCACCTTCTAATGAAGATCGTGAGGAAAGAGAAA
AATCAGACAACGAAGAAGAACAACaacaaagatttcaaagtgaTAAAGAA
AGAGAACGCTACGAAGAACGAAAATCACCTTACGATGAAACATGGAGAAT
AAATAACACACCACCCATCCACCCACCGCCACCATCTTCTTTTGAACACC
ATCGAACGTCTTTTACTTCCATGGCAACCGAACATAACAACCAACGGCAA
ATGGCAGCAAGATATCACCACCAGAGACCAGACTACGCAACACAAAGAAA
ATACTTACAATCTGTCGTCACGTCAGGGCGACACTCGTCCTCAGCCCACT
TACACGCGCCGTATCCTGAAAAATGCCACTGCGACGATTGTGTACAAAAG
AGTTATTACATGATGCGTGCTAATCGAGGCAAACCAGGCTACATCCAACC
TCCAAAAACCATTCATGACAAAGAGCGTCCACCAAGATTACCTTACAATC
ACGTCCGACCTTTTATCAACACTCGAGATTTCGAACCCAAAGAAACAAGA
TTTAGTTCAGAGCATACAAAACCTTATCATCGACTACCTAACGACTATCG
CGGTAGTTCTAATGCTGTTAAATTGTCAACTAATCCGACAGAAATGAACT
TGAACATTAAGGAAAGAACTGAAAATGCATTAGTTATATCTGTTGTGGTA
GATGGTATATACTATAGTGGTACTCTTTTGACAAACATCAAACGTTAATT
CCCTTCAAAGAAGAGAGACAATAATAGTTTGGGTAGGAAAAAAAAGTTCC
CAGTTACTTCGGATGCAAAACGTCTTATTTACGCTACACTTTTTTTTGTA
CATATTATTTTAAAACAACAAAGAGATTTTTATTATTAAGTATTTTATTG
AGATATTTTTTGCGGCGGATTTTCATATATTGatgttttgtttgtatatt
gCGGACTTTATTATAAAAAACTTTATTATATTTGGTGCGACACAAAGTTT
TTTTATACTACTACTAGTACAGTTTTCAGAATGCATGAACAATTTTGTTT
CgcgttttgataatttttgtacC

Run BLAST on NCBI

protein sequence of TCONS_00049503-protein

>TCONS_00049503-protein ID=TCONS_00049503-protein|Name=TCONS_00049503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
QKMLNHHHENAESALPPTQPAPRVRRCSYSQVDFIERYDAEQQQQRNEKT
RGLIVHETFLKLKEMNNELDRHLFLDDYIAFMVNTGDTEITQKIPIVGKK
LLDLVDLYRLVQKHGGFEKVCQKRQLSAVVRELNLPKTITSAANTLRNQF
ARFLYRFECYQRGVRVNEQFLREQLDSPKPIKEQTPQIRPIKQEDFYYMN
EKQKTRGVDEMHPAFPQYYAQHPENPLLRLSSQPLPRDTVAQRSTSISPP
VLKRPRSTEIQRRKSYENELAQLEEERSKSVDEIYSIDRLVKRRRLSYEK
EGGENIRAERMPSKEEEESVWAANHEQSRPPSTFKRSPTPEDRNETITHD
KERSISPSNEDREEREKSDNEEEQQQRFQSDKERERYEERKSPYDETWRI
NNTPPIHPPPPSSFEHHRTSFTSMATEHNNQRQMAARYHHQRPDYATQRK
YLQSVVTSGRHSSSAHLHAPYPEKCHCDDCVQKSYYMMRANRGKPGYIQP
PKTIHDKERPPRLPYNHVRPFINTRDFEPKETRFSSEHTKPYHRLPNDYR
GSSNAVKLSTNPTEMNLNIKERTENALVISVVVDGIYYSGTLLTNIKR

Run BLAST on NCBI

transcript from alignment at scaffold_16:196067..200979-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049503 ID=TCONS_00049503|Name=TCONS_00049503|organism=Clytia hemisphaerica|type=transcript|length=4913bp|location=Sequence derived from alignment at scaffold_16:196067..200979- (Clytia hemisphaerica)
ACAAAAAATGCTGAATCATCACCATGAGAATGCTGAATCAGCACTTCCAC
CAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCAAGTGGAT
TTTATTGAGAGATATGACGCAGAACAACAACAACAGAGGAATGAGAAAAC
CAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGTAAAAGAATTTATTT
CATCTTGTCTCGTGTATTACTCCCCAAACAAAAAGGTCCTTTTACTACGC
GTAGATCCAGCTAATTTTTTAAAACATTCTGCTAAATTTTTCTCTTAACC
TACTTATGGTCAAGTCTCAAATCTTGATTGTGGTAAAGTCTCAAAACCTA
ATAAGAATTGGAAATTTAGGCTTCCCTATTCAGGCTGTCAGGAAATTGAA
CGAATTTTCGTCATCTTCTTTTCTTAGCTGAAGGAGATGAACAATGAATT
GGATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGTCAATACAG
GTAAAAGTTTTAATTTTTTTTATTTCAGCTCCATTCATTCAAAGGCGGTC
GAAGAGTCGAAGAGTAGATCCTAATCTTACATCTTTTTAAGCGTATCCAT
TAGCTTACACAGCGTTTTCAATCAACAAAAAAATGGCTTTTCCCGCTTCC
CTACCTAACCGCACGAGCACAAATTTTTTTCTTAATTCTACTTTGTCAGT
ATGAGCTGTGCGGCTGCTTTTTATATAATAAAAAAATAAATTTTCTTTTT
CAGGAGATACTGAAATCACACAGAAAATTCCGATTGTTGGAAAGAAATTA
TTAGATCTGGTTGATCTATATCGATTGGTTCAAAAACATGGTGGCTTCGA
AAAGGTATTGATTTTTTAAGAATTGATCAAAAACAGAAAGAAGATTGAAC
AGGAAATCTGTTAAAATGAGTACTGCGCTAGTTGGCTTTAAAACTAATAG
CACTCAATAGAAAATGTAACGCATTTCGTAATACTCTTAACTATCTCTAT
GGTATTGTTGTGCCCAACCCTTGTCCCAGGTGTTGAATCTCTAAGCCAAG
CCATTCCAATCCAATGGTAATAAATTGGACTCATTATTTACACTCATTTT
TCTGTGATAATGAACACCTGCCCACTTAACTCTCTCACGATAATTTCATT
CATCTCTCACTGCAATCCTCGAACTTTAACTCGAACAAGTTGTTTGGTTT
CTCCAGTTAACCCTTATATAGCCAGTCCCCAGCCAGGCAAAGCTCGAAAC
GAATTAACTTTCCCCGAGTACCTTCGACTTTTAAAAACTCCAATACTTAA
TTTCGAATCTAAAAAAAGGAATTTCACACGAATTTGATATAAATTACAGC
GGAGGCTCCATAATTCGAACACGCACGATGAACACAAAATTTGTTCGAGT
TAAGGAAATTTCGAGTTATGAAGTAAGGTTTATAAGGCATTGTTAACTGA
AGGGACCATAAAAATTTTCAAGTTAAGGAGGCATTCGATCTAAAGAGGTT
GGAGTTAAAAATAGAGGTTAAAGAGATTCCATTGTACAAACACATTTAGA
TCAAAGCAATATTCTTCGTTTTCAACACCCGTCTGATAATTCTTCTTATT
TTTGACTCAACTTATTCAGGTTTGCCAGAAACGTCAATTAAGTGCTGTAG
TCAGAGAATTGAACTTGCCAAAGACGATCACCAGTGCAGCTAATACATTA
CGAAACCAGTGAGTATTTTGCCTTTTTTCAATGTTTCAACTTTTCTATAG
GATTGCGACCATCAAGATAAATTATGAATGAATGAATAAATTATTGTATT
ATTACACCGGAAGCTCACCNCGATAAATTGTGAATGAATGAATAAATTAT
TGTATTATTACACCGGAACTGATGAGGCTCACCTTGCCGTGAGCCCACTT
CGGTCCGTCGAACGGACACTATGTCTGTAATGATTTTTTACCTGCTCAAG
AATATCTACAGCTGACAATTTTGCACATTCAAGAAAGTGACCATTTGCAT
CTTAAGCCTAATAATGCACTTAGCTGGGTATAATTTGAATTTACAAGCTG
TTAAATTATTGTCAAATATTGTGTCTCCAAAATTAGAATTAATGAGATGT
AGTTGTCTTGGCTACACTTTACCCTTGTGTTATATTTTGGCATTTTAATA
CTCTAGCAACATCTAATTTTAACTTTGATAGATTTTTGCAAATTAAGTGT
TGGTCTGACGACGTTTTAAAAATATTATTAAAGTTATGCATTTCGAAGTA
TTTACGTAAATTTTGTTAGAAGAATTTTCGGGATATCTCATAATCTCGCG
TAAATAGTAGAATAATGGATTTCTAATTTTTTTGTAGTTATTGGGTTTGT
CCACAGAAATTAATCGGGATGTTTTACTTTATTGTTTTTTTATTTTCAGA
TTCGCACGATTTTTGTATCGTTTCGAATGTTATCAAAGAGGCGTCCGCGT
CAACGAGCAATTTCTCCGTGAACAATTGGATAGTCCTAAACCAATCAAAG
AACAGACTCCTCAAATCCGACCAATCAAACAAGAGGATTTTTATTACATG
AACGAAAAACAGAAAACACGTGGTGTCGACGAAATGCATCCTGCTTTCCC
ACAATACTATGCGCAACACCCCGAAAATCCTTTGCTTCGTTTATCATCAC
AACCGTTGCCAAGAGATACAGTTGCTCAGCGATCGACCTCGATTTCACCA
CCGGTTTTGAAACGGCCAAGAAGTACTGAGATTCAACGGAGGAAAAGTTA
TGAAAACGAACTGGCTCAATTGGTAAGATGATGTTTTACTTTTTCTTCCG
TCTTGTCTTTGGAGATAAGATTTCGCGTTATGGATTCTGCATTATTCCAG
TTAAACTCGGGGGGGGGGGGGTNAGGGTTGCGAGCTGACGGGTATGTGCC
GCCCGACTTTTGACCCTTGGACCCTTAGCGGGACTAAAAGAGAGTCTAAA
TAAGTCTTAATTGGTTTTCTAGAAGGGGTGATATATTAAAACATCATCAT
TACTCGAACCGAGTGACCTTGAGTCATCAACAAAAAATTGTTTTTGCTTA
CCAAATCATTATAAACAAAGAAAATGATAAAAATAGCTCGGAAGGATGAA
GGTCATTGGTACAATTTATGCTTCTGATAATTAAATGATCTTTATTTTCC
ATACCCTGCCCACTATTCTAAATTTATTAATAATGGTTGTCCTAAATTAC
TAGTCATATATTTTGCGCTAAAAAGATGTACGGTCAAAACGATTTTTATT
TTGCTGACACGCTAATTATGATTATTCATATTTCTCCAAGGTCATTCATG
CCAAAATTTATACGCTTATTAACGATGAAATTGCATCCTAGTAAAACTTT
TCCTTTTTTTACCTTTGTATTTTTTCGTCAACTGTTGTTGCCAAAAAATG
TACATTTTTGAGAAGTTTTCTTCCTGTAAACTTTTTAAGTTCTTGCGAAA
TTTTCTTATTCTCAAAAGTTTCTTATTCTCAAAAGTTTCTTATTCTCAAA
AGTTTCTACCATTATCACTTAACATACAATGTTCTTTTAAAAGGACAGAC
TCGGCTATTCTCATTTTCTTCTCAAACTCTAAAAATATTCTTAATAATTT
GCTCTTATAGGAAGAGGAGCGTTCAAAGTCTGTCGACGAAATCTACTCCA
TTGATCGATTGGTCAAACGCCGAAGACTGTCATATGAAAAGGAGGGCGGT
GAAAACATCAGGGCGGAGCGAATGCCATCAAAGGAAGAGGAAGAGAGTGT
ATGGGCGGCCAATCATGAGCAATCGCGCCCACCATCAACATTTAAACGAT
CCCCTACCCCTGAAGATCGTAATGAGACTATTACGCATGACAAAGAGAGG
TCTATTTCACCTTCTAATGAAGATCGTGAGGAAAGAGAAAAATCAGACAA
CGAAGAAGAACAACAACAAAGATTTCAAAGTGATAAAGAAAGAGAACGCT
ACGAAGAACGAAAATCACCTTACGATGAAACATGGAGAATAAATAACACA
CCACCCATCCACCCACCGCCACCATCTTCTTTTGAACACCATCGAACGTC
TTTTACTTCCATGGCAACCGAACATAACAACCAACGGCAAATGGCAGCAA
GATATCACCACCAGAGACCAGACTACGCAACACAAAGAAAATACTTACAA
TCTGTCGTCACGTCAGGGCGACACTCGTCCTCAGCCCACTTACACGCGCC
GTATCCTGAAAAATGCCACTGCGACGATTGTGTACAAAAGAGTTATTACA
TGATGCGTGCTAATCGAGGCAAACCAGGCTACATCCAACCTCCAAAAACC
ATTCATGACAAAGAGCGTCCACCAAGATTACCTTACAATCACGTCCGACC
TTTTATCAACACTCGAGATTTCGAACCCAAAGAAACAAGATTTAGTTCAG
AGCATACAAAACCTTATCATCGACTACCTAACGACTATCGCGGTAGTTCT
AATGCTGTTAAATTGTCAACTAATCCGACAGAAATGAACTTGAACATTAA
GGAAAGAACTGAAAATGCATTAGTTATATCTGTTGTGGTAGATGGTATAT
ACTATAGTGGTACTCTTTTGACAAACATCAAACGTTAATTCCCTTCAAAG
AAGAGAGACAATAATAGTTTGGGTAGGAAAAAAAAGTTCCCAGTTACTTC
GGATGCAAAACGTCTTATTTACGCTACACTTTTTTTTGTACATATTATTT
TAAAACAACAAAGAGATTTTTATTATTAAGTATTTTATTGAGATATTTTT
TGCGGCGGATTTTCATATATTGATGTTTTGTTTGTATATTGCGGACTTTA
TTATAAAAAACTTTATTATATTTGGTGCGACACAAAGTTTTTTTATACTA
CTACTAGTACAGTTTTCAGAATGCATGAACAATTTTGTTTCGCGTTTTGA
TAATTTTTGTACC

Coding sequence (CDS) from alignment at scaffold_16:196067..200979-

>TCONS_00049503 ID=TCONS_00049503|Name=TCONS_00049503|organism=Clytia hemisphaerica|type=CDS|length=10782bp|location=Sequence derived from alignment at scaffold_16:196067..200979- (Clytia hemisphaerica)
GAAGAGGAGCGTTCAAAGTCTGTCGACGAAATCTACTCCATTGATCGATT
GGTCAAACGCCGAAGACTGTCATATGAAAAGGAGGGCGGTGAAAACATCA
GGGCGGAGCGAATGCCATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCC
AATCATGAGCAATCGCGCCCACCATCAACATTTAAACGATCCCCTACCCC
TGAAGATCGTAATGAGACTATTACGCATGACAAAGAGAGGTCTATTTCAC
CTTCTAATGAAGATCGTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAA
CAACAACAAAGATTTCAAAGTGATAAAGAAAGAGAACGCTACGAAGAACG
AAAATCACCTTACGATGAAACATGGAGAATAAATAACACACCACCCATCC
ACCCACCGCCACCATCTTCTTTTGAACACCATCGAACGTCTTTTACTTCC
ATGGCAACCGAACATAACAACCAACGGCAAATGGCAGCAAGATATCACCA
CCAGAGACCAGACTACGCAACACAAAGAAAATACTTACAATCTGTCGTCA
CGTCAGGGCGACACTCGTCCTCAGCCCACTTACACGCGCCGTATCCTGAA
AAATGCCACTGCGACGATTGTGTACAAAAGAGTTATTACATGATGCGTGC
TAATCGAGGCAAACCAGGCTACATCCAACCTCCAAAAACCATTCATGACA
AAGAGCGTCCACCAAGATTACCTTACAATCACGTCCGACCTTTTATCAAC
ACTCGAGATTTCGAACCCAAAGAAACAAGATTTAGTTCAGAGCATACAAA
ACCTTATCATCGACTACCTAACGACTATCGCGGTAGTTCTAATGCTGTTA
AATTGTCAACTAATCCGACAGAAATGAACTTGAACATTAAGGAAAGAACT
GAAAATGCATTAGTTATATCTGTTGTGGTAGATGGTATATACTATAGTGG
TACTCTTTTGACAAACATCAAACGTTAAATTCGCACGATTTTTGTATCGT
TTCGAATGTTATCAAAGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGA
ACAATTGGATAGTCCTAAACCAATCAAAGAACAGACTCCTCAAATCCGAC
CAATCAAACAAGAGGATTTTTATTACATGAACGAAAAACAGAAAACACGT
GGTGTCGACGAAATGCATCCTGCTTTCCCACAATACTATGCGCAACACCC
CGAAAATCCTTTGCTTCGTTTATCATCACAACCGTTGCCAAGAGATACAG
TTGCTCAGCGATCGACCTCGATTTCACCACCGGTTTTGAAACGGCCAAGA
AGTACTGAGATTCAACGGAGGAAAAGTTATGAAAACGAACTGGCTCAATT
GGTTTGCCAGAAACGTCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGC
CAAAGACGATCACCAGTGCAGCTAATACATTACGAAACCAGAGATACTGA
AATCACACAGAAAATTCCGATTGTTGGAAAGAAATTATTAGATCTGGTTG
ATCTATATCGATTGGTTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAG
ATGAACAATGAATTGGATCGACATTTGTTTTTGGACGACTATATTGCTTT
CATGGTCAATACAGCAAAAAATGCTGAATCATCACCATGAGAATGCTGAA
TCAGCACTTCCACCAACACAACCGGCACCACGTGTAAGACGGTGTAGTTA
CAGTCAAGTGGATTTTATTGAGAGATATGACGCAGAACAACAACAACAGA
GGAATGAGAAAACCAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGAA
GAGGAGCGTTCAAAGTCTGTCGACGAAATCTACTCCATTGATCGATTGGT
CAAACGCCGAAGACTGTCATATGAAAAGGAGGGCGGTGAAAACATCAGGG
CGGAGCGAATGCCATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCCAAT
CATGAGCAATCGCGCCCACCATCAACATTTAAACGATCCCCTACCCCTGA
AGATCGTAATGAGACTATTACGCATGACAAAGAGAGGTCTATTTCACCTT
CTAATGAAGATCGTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAACAA
CAACAAAGATTTCAAAGTGATAAAGAAAGAGAACGCTACGAAGAACGAAA
ATCACCTTACGATGAAACATGGAGAATAAATAACACACCACCCATCCACC
CACCGCCACCATCTTCTTTTGAACACCATCGAACGTCTTTTACTTCCATG
GCAACCGAACATAACAACCAACGGCAAATGGCAGCAAGATATCACCACCA
GAGACCAGACTACGCAACACAAAGAAAATACTTACAATCTGTCGTCACGT
CAGGGCGACACTCGTCCTCAGCCCACTTACACGCGCCGTATCCTGAAAAA
TGCCACTGCGACGATTGTGTACAAAAGAGTTATTACATGATGCGTGCTAA
TCGAGGCAAACCAGGCTACATCCAACCTCCAAAAACCATTCATGACAAAG
AGCGTCCACCAAGATTACCTTACAATCACGTCCGACCTTTTATCAACACT
CGAGATTTCGAACCCAAAGAAACAAGATTTAGTTCAGAGCATACAAAACC
TTATCATCGACTACCTAACGACTATCGCGGTAGTTCTAATGCTGTTAAAT
TGTCAACTAATCCGACAGAAATGAACTTGAACATTAAGGAAAGAACTGAA
AATGCATTAGTTATATCTGTTGTGGTAGATGGTATATACTATAGTGGTAC
TCTTTTGACAAACATCAAACGTTAAATTCGCACGATTTTTGTATCGTTTC
GAATGTTATCAAAGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGAACA
ATTGGATAGTCCTAAACCAATCAAAGAACAGACTCCTCAAATCCGACCAA
TCAAACAAGAGGATTTTTATTACATGAACGAAAAACAGAAAACACGTGGT
GTCGACGAAATGCATCCTGCTTTCCCACAATACTATGCGCAACACCCCGA
AAATCCTTTGCTTCGTTTATCATCACAACCGTTGCCAAGAGATACAGTTG
CTCAGCGATCGACCTCGATTTCACCACCGGTTTTGAAACGGCCAAGAAGT
ACTGAGATTCAACGGAGGAAAAGTTATGAAAACGAACTGGCTCAATTGGT
TTGCCAGAAACGTCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGCCAA
AGACGATCACCAGTGCAGCTAATACATTACGAAACCAGAGATACTGAAAT
CACACAGAAAATTCCGATTGTTGGAAAGAAATTATTAGATCTGGTTGATC
TATATCGATTGGTTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAGATG
AACAATGAATTGGATCGACATTTGTTTTTGGACGACTATATTGCTTTCAT
GGTCAATACAGCAAAAAATGCTGAATCATCACCATGAGAATGCTGAATCA
GCACTTCCACCAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAG
TCAAGTGGATTTTATTGAGAGATATGACGCAGAACAACAACAACAGAGGA
ATGAGAAAACCAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGAAGAG
GAGCGTTCAAAGTCTGTCGACGAAATCTACTCCATTGATCGATTGGTCAA
ACGCCGAAGACTGTCATATGAAAAGGAGGGCGGTGAAAACATCAGGGCGG
AGCGAATGCCATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCCAATCAT
GAGCAATCGCGCCCACCATCAACATTTAAACGATCCCCTACCCCTGAAGA
TCGTAATGAGACTATTACGCATGACAAAGAGAGGTCTATTTCACCTTCTA
ATGAAGATCGTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAACAACAA
CAAAGATTTCAAAGTGATAAAGAAAGAGAACGCTACGAAGAACGAAAATC
ACCTTACGATGAAACATGGAGAATAAATAACACACCACCCATCCACCCAC
CGCCACCATCTTCTTTTGAACACCATCGAACGTCTTTTACTTCCATGGCA
ACCGAACATAACAACCAACGGCAAATGGCAGCAAGATATCACCACCAGAG
ACCAGACTACGCAACACAAAGAAAATACTTACAATCTGTCGTCACGTCAG
GGCGACACTCGTCCTCAGCCCACTTACACGCGCCGTATCCTGAAAAATGC
CACTGCGACGATTGTGTACAAAAGAGTTATTACATGATGCGTGCTAATCG
AGGCAAACCAGGCTACATCCAACCTCCAAAAACCATTCATGACAAAGAGC
GTCCACCAAGATTACCTTACAATCACGTCCGACCTTTTATCAACACTCGA
GATTTCGAACCCAAAGAAACAAGATTTAGTTCAGAGCATACAAAACCTTA
TCATCGACTACCTAACGACTATCGCGGTAGTTCTAATGCTGTTAAATTGT
CAACTAATCCGACAGAAATGAACTTGAACATTAAGGAAAGAACTGAAAAT
GCATTAGTTATATCTGTTGTGGTAGATGGTATATACTATAGTGGTACTCT
TTTGACAAACATCAAACGTTAAATTCGCACGATTTTTGTATCGTTTCGAA
TGTTATCAAAGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGAACAATT
GGATAGTCCTAAACCAATCAAAGAACAGACTCCTCAAATCCGACCAATCA
AACAAGAGGATTTTTATTACATGAACGAAAAACAGAAAACACGTGGTGTC
GACGAAATGCATCCTGCTTTCCCACAATACTATGCGCAACACCCCGAAAA
TCCTTTGCTTCGTTTATCATCACAACCGTTGCCAAGAGATACAGTTGCTC
AGCGATCGACCTCGATTTCACCACCGGTTTTGAAACGGCCAAGAAGTACT
GAGATTCAACGGAGGAAAAGTTATGAAAACGAACTGGCTCAATTGGTTTG
CCAGAAACGTCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGCCAAAGA
CGATCACCAGTGCAGCTAATACATTACGAAACCAGAGATACTGAAATCAC
ACAGAAAATTCCGATTGTTGGAAAGAAATTATTAGATCTGGTTGATCTAT
ATCGATTGGTTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAGATGAAC
AATGAATTGGATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGT
CAATACAGCAAAAAATGCTGAATCATCACCATGAGAATGCTGAATCAGCA
CTTCCACCAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCA
AGTGGATTTTATTGAGAGATATGACGCAGAACAACAACAACAGAGGAATG
AGAAAACCAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGAAGAGGAG
CGTTCAAAGTCTGTCGACGAAATCTACTCCATTGATCGATTGGTCAAACG
CCGAAGACTGTCATATGAAAAGGAGGGCGGTGAAAACATCAGGGCGGAGC
GAATGCCATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCCAATCATGAG
CAATCGCGCCCACCATCAACATTTAAACGATCCCCTACCCCTGAAGATCG
TAATGAGACTATTACGCATGACAAAGAGAGGTCTATTTCACCTTCTAATG
AAGATCGTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAACAACAACAA
AGATTTCAAAGTGATAAAGAAAGAGAACGCTACGAAGAACGAAAATCACC
TTACGATGAAACATGGAGAATAAATAACACACCACCCATCCACCCACCGC
CACCATCTTCTTTTGAACACCATCGAACGTCTTTTACTTCCATGGCAACC
GAACATAACAACCAACGGCAAATGGCAGCAAGATATCACCACCAGAGACC
AGACTACGCAACACAAAGAAAATACTTACAATCTGTCGTCACGTCAGGGC
GACACTCGTCCTCAGCCCACTTACACGCGCCGTATCCTGAAAAATGCCAC
TGCGACGATTGTGTACAAAAGAGTTATTACATGATGCGTGCTAATCGAGG
CAAACCAGGCTACATCCAACCTCCAAAAACCATTCATGACAAAGAGCGTC
CACCAAGATTACCTTACAATCACGTCCGACCTTTTATCAACACTCGAGAT
TTCGAACCCAAAGAAACAAGATTTAGTTCAGAGCATACAAAACCTTATCA
TCGACTACCTAACGACTATCGCGGTAGTTCTAATGCTGTTAAATTGTCAA
CTAATCCGACAGAAATGAACTTGAACATTAAGGAAAGAACTGAAAATGCA
TTAGTTATATCTGTTGTGGTAGATGGTATATACTATAGTGGTACTCTTTT
GACAAACATCAAACGTTAAATTCGCACGATTTTTGTATCGTTTCGAATGT
TATCAAAGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGAACAATTGGA
TAGTCCTAAACCAATCAAAGAACAGACTCCTCAAATCCGACCAATCAAAC
AAGAGGATTTTTATTACATGAACGAAAAACAGAAAACACGTGGTGTCGAC
GAAATGCATCCTGCTTTCCCACAATACTATGCGCAACACCCCGAAAATCC
TTTGCTTCGTTTATCATCACAACCGTTGCCAAGAGATACAGTTGCTCAGC
GATCGACCTCGATTTCACCACCGGTTTTGAAACGGCCAAGAAGTACTGAG
ATTCAACGGAGGAAAAGTTATGAAAACGAACTGGCTCAATTGGTTTGCCA
GAAACGTCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGCCAAAGACGA
TCACCAGTGCAGCTAATACATTACGAAACCAGAGATACTGAAATCACACA
GAAAATTCCGATTGTTGGAAAGAAATTATTAGATCTGGTTGATCTATATC
GATTGGTTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAGATGAACAAT
GAATTGGATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGTCAA
TACAGCAAAAAATGCTGAATCATCACCATGAGAATGCTGAATCAGCACTT
CCACCAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCAAGT
GGATTTTATTGAGAGATATGACGCAGAACAACAACAACAGAGGAATGAGA
AAACCAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGAAGAGGAGCGT
TCAAAGTCTGTCGACGAAATCTACTCCATTGATCGATTGGTCAAACGCCG
AAGACTGTCATATGAAAAGGAGGGCGGTGAAAACATCAGGGCGGAGCGAA
TGCCATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCCAATCATGAGCAA
TCGCGCCCACCATCAACATTTAAACGATCCCCTACCCCTGAAGATCGTAA
TGAGACTATTACGCATGACAAAGAGAGGTCTATTTCACCTTCTAATGAAG
ATCGTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAACAACAACAAAGA
TTTCAAAGTGATAAAGAAAGAGAACGCTACGAAGAACGAAAATCACCTTA
CGATGAAACATGGAGAATAAATAACACACCACCCATCCACCCACCGCCAC
CATCTTCTTTTGAACACCATCGAACGTCTTTTACTTCCATGGCAACCGAA
CATAACAACCAACGGCAAATGGCAGCAAGATATCACCACCAGAGACCAGA
CTACGCAACACAAAGAAAATACTTACAATCTGTCGTCACGTCAGGGCGAC
ACTCGTCCTCAGCCCACTTACACGCGCCGTATCCTGAAAAATGCCACTGC
GACGATTGTGTACAAAAGAGTTATTACATGATGCGTGCTAATCGAGGCAA
ACCAGGCTACATCCAACCTCCAAAAACCATTCATGACAAAGAGCGTCCAC
CAAGATTACCTTACAATCACGTCCGACCTTTTATCAACACTCGAGATTTC
GAACCCAAAGAAACAAGATTTAGTTCAGAGCATACAAAACCTTATCATCG
ACTACCTAACGACTATCGCGGTAGTTCTAATGCTGTTAAATTGTCAACTA
ATCCGACAGAAATGAACTTGAACATTAAGGAAAGAACTGAAAATGCATTA
GTTATATCTGTTGTGGTAGATGGTATATACTATAGTGGTACTCTTTTGAC
AAACATCAAACGTTAAATTCGCACGATTTTTGTATCGTTTCGAATGTTAT
CAAAGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGAACAATTGGATAG
TCCTAAACCAATCAAAGAACAGACTCCTCAAATCCGACCAATCAAACAAG
AGGATTTTTATTACATGAACGAAAAACAGAAAACACGTGGTGTCGACGAA
ATGCATCCTGCTTTCCCACAATACTATGCGCAACACCCCGAAAATCCTTT
GCTTCGTTTATCATCACAACCGTTGCCAAGAGATACAGTTGCTCAGCGAT
CGACCTCGATTTCACCACCGGTTTTGAAACGGCCAAGAAGTACTGAGATT
CAACGGAGGAAAAGTTATGAAAACGAACTGGCTCAATTGGTTTGCCAGAA
ACGTCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGCCAAAGACGATCA
CCAGTGCAGCTAATACATTACGAAACCAGAGATACTGAAATCACACAGAA
AATTCCGATTGTTGGAAAGAAATTATTAGATCTGGTTGATCTATATCGAT
TGGTTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAGATGAACAATGAA
TTGGATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGTCAATAC
AGCAAAAAATGCTGAATCATCACCATGAGAATGCTGAATCAGCACTTCCA
CCAACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCAAGTGGA
TTTTATTGAGAGATATGACGCAGAACAACAACAACAGAGGAATGAGAAAA
CCAGAGGTTTGATCGTACACGAAACTTTTTTGAAGGAAGAGGAGCGTTCA
AAGTCTGTCGACGAAATCTACTCCATTGATCGATTGGTCAAACGCCGAAG
ACTGTCATATGAAAAGGAGGGCGGTGAAAACATCAGGGCGGAGCGAATGC
CATCAAAGGAAGAGGAAGAGAGTGTATGGGCGGCCAATCATGAGCAATCG
CGCCCACCATCAACATTTAAACGATCCCCTACCCCTGAAGATCGTAATGA
GACTATTACGCATGACAAAGAGAGGTCTATTTCACCTTCTAATGAAGATC
GTGAGGAAAGAGAAAAATCAGACAACGAAGAAGAACAACAACAAAGATTT
CAAAGTGATAAAGAAAGAGAACGCTACGAAGAACGAAAATCACCTTACGA
TGAAACATGGAGAATAAATAACACACCACCCATCCACCCACCGCCACCAT
CTTCTTTTGAACACCATCGAACGTCTTTTACTTCCATGGCAACCGAACAT
AACAACCAACGGCAAATGGCAGCAAGATATCACCACCAGAGACCAGACTA
CGCAACACAAAGAAAATACTTACAATCTGTCGTCACGTCAGGGCGACACT
CGTCCTCAGCCCACTTACACGCGCCGTATCCTGAAAAATGCCACTGCGAC
GATTGTGTACAAAAGAGTTATTACATGATGCGTGCTAATCGAGGCAAACC
AGGCTACATCCAACCTCCAAAAACCATTCATGACAAAGAGCGTCCACCAA
GATTACCTTACAATCACGTCCGACCTTTTATCAACACTCGAGATTTCGAA
CCCAAAGAAACAAGATTTAGTTCAGAGCATACAAAACCTTATCATCGACT
ACCTAACGACTATCGCGGTAGTTCTAATGCTGTTAAATTGTCAACTAATC
CGACAGAAATGAACTTGAACATTAAGGAAAGAACTGAAAATGCATTAGTT
ATATCTGTTGTGGTAGATGGTATATACTATAGTGGTACTCTTTTGACAAA
CATCAAACGTTAAATTCGCACGATTTTTGTATCGTTTCGAATGTTATCAA
AGAGGCGTCCGCGTCAACGAGCAATTTCTCCGTGAACAATTGGATAGTCC
TAAACCAATCAAAGAACAGACTCCTCAAATCCGACCAATCAAACAAGAGG
ATTTTTATTACATGAACGAAAAACAGAAAACACGTGGTGTCGACGAAATG
CATCCTGCTTTCCCACAATACTATGCGCAACACCCCGAAAATCCTTTGCT
TCGTTTATCATCACAACCGTTGCCAAGAGATACAGTTGCTCAGCGATCGA
CCTCGATTTCACCACCGGTTTTGAAACGGCCAAGAAGTACTGAGATTCAA
CGGAGGAAAAGTTATGAAAACGAACTGGCTCAATTGGTTTGCCAGAAACG
TCAATTAAGTGCTGTAGTCAGAGAATTGAACTTGCCAAAGACGATCACCA
GTGCAGCTAATACATTACGAAACCAGAGATACTGAAATCACACAGAAAAT
TCCGATTGTTGGAAAGAAATTATTAGATCTGGTTGATCTATATCGATTGG
TTCAAAAACATGGTGGCTTCGAAAAGCTGAAGGAGATGAACAATGAATTG
GATCGACATTTGTTTTTGGACGACTATATTGCTTTCATGGTCAATACAGC
AAAAAATGCTGAATCATCACCATGAGAATGCTGAATCAGCACTTCCACCA
ACACAACCGGCACCACGTGTAAGACGGTGTAGTTACAGTCAAGTGGATTT
TATTGAGAGATATGACGCAGAACAACAACAACAGAGGAATGAGAAAACCA
GAGGTTTGATCGTACACGAAACTTTTTTGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031402	XLOC_031402	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049503-protein	TCONS_00049503-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:196067..200979 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00022	3.01532	0.666522	0.323164	3.48886	3.1081	1.75556	2.21525	1.35814	2.14486	2.68545	1.72708	2.90329	2.17641	2.11289	6.3778	16.0077	20.7133	0.404257	0.664085	0.752706	0.524491	2.8517	2.40442	2.18913	4.09445	5.67437	0.569627	1.79966	2.03772

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

Blast

[Close]

BLAST of TCONS_00049503 vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.147e-20
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 2

Query:  170 ETFLKLKEMNNELDRHLFLDDYIAFMVNTGDTEITQKIPIVGKKLLDLVDLYRLVQKHGGFEKVCQKRQLSAVVRELNLPKTITSAANTLRNQFARFLYRFECYQRGVRVNEQFLREQLDS 532
            E F +L E++ +  R  FLDD  +FM   G      +IPI+ K++LDL  LY LV + GG  +V  K+    + + LNLP +ITSAA TLR Q+ ++LY +EC +RG+  N   L+  +DS
Sbjct:  227 EQFKQLYELDGDPKRKEFLDDLFSFMQKRGTP--VNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLS-NPNELQAAIDS 344

The following BLAST results are available for this feature:

BLAST of TCONS_00049503 vs. Swiss-Prot (Human)

BLAST of TCONS_00049503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARI3A	7.147e-20	41.32	AT-rich interactive domain-containing protein 3A O...	[more]

You are here

TCONS_00049503 (transcript) - C. hemisphaerica