TCONS_00050813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050813
Unique NameTCONS_00050813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=transcript|length=1619bp
TGAGTTTTAGGATAAGTGTCTTCATTTATAAATTATCATCTGAGATCTGA
GACCCAAGTGTTATTATATTATAAGAATTAATTTTCTCTTCTTCAAAAGG
TGACatataaaattaaattattaattattaaaaATGAGTTTAAAAGGATT
TGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGAATTGAGcgaag
aacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTGATACTGATAAA
GACAATGCTATTGATTACCATGAACTAAAGGTAGCAATGAGGGCGCTTGG
TTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACGCGATTATGATC
GCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAGAAGTCACAACA
GACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCTACAAAGCATTCCG
CCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTACGGAATTTACGAC
GTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGACGAATTGAGATCG
ATGATTGACGAATTCGATAAAGATGGTGATGGCGAAAtTAACGAAAACGA
ATTCCTTTCAATTATGACTGGTGACACGTGATGGTGAGAGGTGCAATCGA
AATGATAatgtatttctttttcaatggttttTATCTCTTCTAACTGTTCT
TTCTATGTGATTTGATGGTATGAATGAACTTACTACTGATAATAGAATGG
TGAGGTTTAATATTTTGTATTGAAATAGTTGGGAATATTCCTGAGATAAC
ATATACATCGTTTGAACCAATATTTATAATCGTACAGCTTCTAGCTGGAT
TTACATGCTTTACGATCCTCATTCTATACTGGTACAAAAACATAATGCTG
AAGGAGGTTTGTTGGGTCTGAAAAAACTGGATCCCTCGTTTTAAATGTGA
ACATCTATCCATCTTTCAATTCAAGCTAAGATTGATCAAAGTTCTAACGT
CTCAAACGGATTTTCTCTCGATGTTGCGAAATTGCTGAAATGTTCAAATA
TTGTTGATATTccgcaaaatttcatgaatcgggaaaatatttttgtaaag
tcCTTTCGATCTAAGATGAAAATTTGGTTGTGACCAGTGATTTGTTCCCT
GCTCAGTCACACCATCACACCGAAATTTCTACCTTTttacaagagaaaaa
ttcaTTATTTAACGAGCTGTCGAATATGAAATTTTACATCTTTATACAAT
TTTCAAAGAGATTTTGGTTGCCAAGAGTTCATTGGGATGTATCTTTTGTT
TACGAgtgaattcttataaaaacacgcGAAGAAACCTGAAGAAGCTTGTT
TCTTGAAGttgaattcaaatttaaagatttATTACGACCATTTGCTCCCT
AAATAGTTGTTTGAGttaaattttgagcaaatttaaTTCTTAAATATATT
CGCAGGGTTCGGCTGAATGCATAATTTTTTAACACTAGGGACTTATATAT
TGTATATATATTGTGACATAATAGTTAGTTGTTTATTTGTATGAAGAAGT
TTTCATAttggtaaaatattttaatcacaatttttttgttttttatccat
tttctaAATTACGGTTAGG
Run BLAST on NCBI

protein sequence of TCONS_00050813-protein

>TCONS_00050813-protein ID=TCONS_00050813-protein|Name=TCONS_00050813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MSLKGFADKSKSGLKKRRELSEEQKQEIKEAFELFDTDKDNAIDYHELKV
AMRALGFDVKKADVLKILRDYDRDSTGQIHFDDFKEVTTDWMLDRDPQEE
IYKAFRLFDDDSTGKISVRNLRRVARELGENMTDDELRSMIDEFDKDGDG
EINENEFLSIMTGDT
Run BLAST on NCBI

transcript from alignment at scaffold_189:335389..339852+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=transcript|length=4464bp|location=Sequence derived from alignment at scaffold_189:335389..339852+ (Clytia hemisphaerica)
TGAGTTTTAGGATAAGTGTCTTCATTTATAAATTATCATCTGAGATCTGA
GACCCAAGTGTTATTATATTATAAGAATTAATTTTCTCTTCTTCAAAAGG
TGACatataaaattaaattattaattattaaaaATGAGTTTAAAAGGATT
TGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGAATTGAGcgaag
aacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTGATACTGATAAA
GACAATGCTATTGATTACCATGAACTAAAGGTAAGCTCTCATTGACTTTC
AATAATACATCAATGAATATTGGTCATGGCGCTCTAAATAGGCCTTGAAC
TTAGAACGCCATGATGTTGGTACATTTTGTTCGTCTTATTTGTCGACCTT
TTTAACCcaattcatactaggcttttaagGCCGTTCAAAACTCGTAAAAA
GTAAATCACAACGAAGCACACGTCGTCTCACAATTCATTCGGTTGGTAAA
AGAGTCAGATTTTGCAACCCTTCTGTGACGTCATGAAACGATACAaatac
acctatcaaccttAGCGGCGCGGTCAACCTTTTAAGGAGACTGGTAACGA
AATACGAGTAATTCACCAAAAGCTGGGATATCCCATTCTTTCTTTTAGAG
TAACActtgatttgttttgtttttgatttgattgttacACTACGTGATTT
TCTGGAGAGAAAAAACCTGATGCATGTTCCCTTTCGCTTTATCACGTCAA
AAGACAAAGGATGTTTCAGAAGTGAAAAcgataaaaaaaagatttattct
CGGCGCATGCCATTTTTAGGCAACGtttaaaaacaaaccaaattcCCGTC
AAAACTTCATGGCATATAAAGTGCAGTGGAGTGTAACATATTTTTAATGT
TTGGAGCCCAGGTTTTCCAGGCTCCAAACattagattttttgacgtcatt
ttaactTCCCCATAACTTCTCCCGGGTAGAAGAGGTCGTGCGTTGAAGGA
GGTTCGGGTAGGAGGATGTTGGATATTATAAAACCCACCGGAGGAAGgct
tttttattcaaagttttacCAGAACTTTTAAATCACAGTTCGATGTAAAA
GCTTTCTGCTGTTCATATTTGCGGTTCCATTTGATCTTTTATTGAACATT
TATTACACGTGTTTTATAGATTAGTAAACGAATGACGAATTTCTCAGAAA
CGTATCGAGAAAATAAAGCAGGTCCTAAAATTCAAGTTctacaaaaatga
aattgatatacttttcttaaaattcatTCTTTTACTTAACCCCATTCATT
TTATTGTCCATAtctcaaattattttgattggcaGCAAAAAAGTTCCAAA
CTATTGGCcatagctcctgaccacttgatttaaagtgGCATGTTTTTTTT
AGAAGGAGTATATCAAATAGCTTTCCAACAGTTCTAAAATGAGCTTGTAG
CTCTCAAGCTATAAGCTTTTATGCCAATTTTCACACTGAAAGGGCACAAG
TTTATTTTCAGCATGATgttatgttttttcttgtattttcttaACGCTAA
CAAGTATAGTAGAATTTTCTCGAACCTGCTTTTGTTACATTCAAAAAAGG
GAATTAGGAAGGTAAAAGTCATTATTGACATCATTTTTTATGTTCGAGCT
ACTTGAAAATGCACTGGATCAAGATCTGTCCAGATATTTTAGtttgagat
ttaaaaaaactcgagttagaaagactgataaaaaatgaatttagcCGAGA
GTGCTCACACAATTTTCAAAGAGACCAAACTTTAGAAAGAGAGGTTGAGA
AGCAAGAGAGTCTTCTTCAACAATCTTCAGCTTTGAGTTGGCGGGAGGGG
GGTTGCTTATTTGTCTGGGCCAGGGAAATGCAATATGAAAGGTTAATGTT
GGCTGAAAATACTTGACGTTAGAAGTGTACAAATTTGACGTATGTTCCTT
TGAATGTAAAACCAGAAATGACTCATTAACAGACCTTTTCATAGATTACG
TCATGggcaacgcttacctcgtttaCAAAGTATTGCTATgatggtaattg
attcccagaggTGTTTTAAAGAAGTTTGAAACTCTATTTGTAAAAGTAAC
ACTTGAAGACTTTTTAATAACCCTATAATGTTTTCAAAACGAGGTAGTCG
AAATGATTTATGAAGATGACTCGTTCCTTTCTCGCTTTCCGAATTTAAAA
TTTACGTATTCCTTTTTCTTGTACTTTGTAGGTAGCAATGAGGGCGCTTG
GTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACGCGATTATGAT
CGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAGAAGTCAGTAA
GTTTTAAATATAATAGTTGTGGATATTATTTTCGTTGATGTTGATACTTT
CAGATACTTTTGGGGGTTAGCCAACTTAGCCCTCTCCCATGGAGTGAACG
GGAAATAGGGTCTCAGAGAACTGGAACGCTGAAAAAGTTTGTATGACCTT
CTCCAAATTTTTgcacttatttaaaaaaaaattagttgttgtcgaaataa
aagaaatagctactttgtcaaaaaaacaaaaattgtcaaagatttttcaa
tacttcGGCTGTTTCTTGGATTGGATCCCTCCCATTAGAATTATGCTCTG
TCATTAGGTTTTTAAGAGGaattaaatttttatcgaaTACGGGATCGTAT
CGAATAATGGGAAGCCGAGCAAGGCATAAGGTTGGCTGTGTATATCAGAA
CTTGAGTCCATTCATCAAAACGTTCTTCTTTCTTTATAGCAACAGACTGG
ATGCTTGATCGTGATCCTCAAGAAGAGATCTACAAAGCATTCCGCCTCTT
TGATGACGATTCAACCGGCAAGATCAGTGTACGGAATTTACGACGTGTGG
CAAGGGAGTTAGGTGAAAATATGACGGACGACGAATTGAGATCGATGATT
GACGAATTCGATAAAGATGGTGATGGCGAAAGTAAGGCTCTCTTTACACT
GTAAAAGCCACTTAAGTATATAACTTGTTTCTGTTGAGAATTGGCCGTTT
TTATACAAGTCTTCTTACTTTATCAAATAGGATAAAGAAACTTTCGTGGT
CGGATTTGTTTTGGGAATtcaaataattcaaattcaaattttttggacgC
TGTCAACTAAGAATTTAacacaatcaaaacaaaatttcttttggacCAAA
AAGCACGTTACCTGCGaaaaacgaattttcaaaatttaatttgtAATATT
ATAAAGATGGACCTTATAACCTATTgtagtaaattttggctcagtctcga
tttttcttttttataacattttcatgctttgaaagttttttcgaCATTTT
GAAGACTGCATGAAGGTGAACTTGGATTggctattttttttttaaatggt
ctACTATGACgcgatttttgtttgtttttcagtTAACGAAAACGAATTCC
TTTCAATTATGACTGGTGACACGTGATGGTGAGAGGTGCAATCGAAATGA
TAatgtatttctttttcaatggttttTATCTCTTCTAACTGTTCTTTCTA
TGTGATTTGATGGTATGAATGAACTTACTACTGATAATAGAATGGTGAGG
TTTAATATTTTGTATTGAAATAGTTGGGAATATTCCTGAGATAACATATA
CATCGTTTGAACCAATATTTATAATCGTACAGCTTCTAGCTGGATTTACA
TGCTTTACGATCCTCATTCTATACTGGTACAAAAACATAATGCTGAAGGA
GGTTTGTTGGGTCTGAAAAAACTGGATCCCTCGTTTTAAATGTGAACATC
TATCCATCTTTCAATTCAAGCTAAGATTGATCAAAGTTCTAACGTCTCAA
ACGGATTTTCTCTCGATGTTGCGAAATTGCTGAAATGTTCAAATATTGTT
GATATTccgcaaaatttcatgaatcgggaaaatatttttgtaaagtcCTT
TCGATCTAAGATGAAAATTTGGTTGTGACCAGTGATTTGTTCCCTGCTCA
GTCACACCATCACACCGAAATTTCTACCTTTttacaagagaaaaattcaT
TATTTAACGAGCTGTCGAATATGAAATTTTACATCTTTATACAATTTTCA
AAGAGATTTTGGTTGCCAAGAGTTCATTGGGATGTATCTTTTGTTTACGA
gtgaattcttataaaaacacgcGAAGAAACCTGAAGAAGCTTGTTTCTTG
AAGttgaattcaaatttaaagatttATTACGACCATTTGCTCCCTAAATA
GTTGTTTGAGttaaattttgagcaaatttaaTTCTTAAATATATTCGCAG
GGTTCGGCTGAATGCATAATTTTTTAACACTAGGGACTTATATATTGTAT
ATATATTGTGACATAATAGTTAGTTGTTTATTTGTATGAAGAAGTTTTCA
TAttggtaaaatattttaatcacaatttttttgttttttatccattttct
aAATTACGGTTAGG

Coding sequence (CDS) from alignment at scaffold_189:335389..339852+

>TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_189:335389..339852+ (Clytia hemisphaerica)
ATGAGTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAG
ACGGGAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAAT
TATTTGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTA
GCAATGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAAT
TCTACGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATT
TCAAAGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAG
ATCTACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAG
TGTACGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGG
ACGACGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGC
GAAAtTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAAT
GAGTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGAC
GGGAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTA
TTTGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGC
AATGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTC
TACGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTC
AAAGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGAT
CTACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTG
TACGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGAC
GACGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGA
AAtTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAATGA
GTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGG
GAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTATT
TGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGCAA
TGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTA
CGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAA
AGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCT
ACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTA
CGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGA
CGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGAAA
tTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAATGAGT
TTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGA
ATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTG
ATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGCAATG
AGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACG
CGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAG
AAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCTAC
AAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTACG
GAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGACG
AATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGAAAtT
AACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032191XLOC_032191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050813-exon-scaffold_189-1491911889:335389..335668TCONS_00050813-exon-scaffold_189-1491911889:335389..335668Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1510915933:335389..335668TCONS_00050813-exon-scaffold_189-1510915933:335389..335668Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1575043694:335389..335668TCONS_00050813-exon-scaffold_189-1575043694:335389..335668Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1491911889:337620..337734TCONS_00050813-exon-scaffold_189-1491911889:337620..337734Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1510915933:337620..337734TCONS_00050813-exon-scaffold_189-1510915933:337620..337734Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1575043694:337620..337734TCONS_00050813-exon-scaffold_189-1575043694:337620..337734Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1491911889:338178..338369TCONS_00050813-exon-scaffold_189-1491911889:338178..338369Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1510915933:338178..338369TCONS_00050813-exon-scaffold_189-1510915933:338178..338369Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1575043694:338178..338369TCONS_00050813-exon-scaffold_189-1575043694:338178..338369Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1491911889:338821..339852TCONS_00050813-exon-scaffold_189-1491911889:338821..339852Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1510915933:338821..339852TCONS_00050813-exon-scaffold_189-1510915933:338821..339852Clytia hemisphaericaexon
TCONS_00050813-exon-scaffold_189-1575043694:338821..339852TCONS_00050813-exon-scaffold_189-1575043694:338821..339852Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050813-proteinTCONS_00050813-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:335389..339852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.7022	21.175	32.0788	34.9239	98.1984	70.224	83.8165	90.7939	86.9752	70.3862	56.4393	78.9275	9.63886	7.75084	10.8157	9.9356	16.6787	14.7138	5.45644	6.4095	15.4967	16.8737	13.0401	13.0618	22.2872	25.7496	11.144	6.73822	7.12147	6.45895
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00050813 vs. Swiss-Prot (Human)
Match: CETN3 (Centrin-3 OS=Homo sapiens GN=CETN3 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.000e-82
Identity = 126/166 (75.90%), Postives = 149/166 (89.76%), Query Frame = 2 
Query:  128 LKMSLKGFADKSKSGLKKRRELSEEQKQEIKEAFELFDTDKDNAIDYHELKVAMRALGFDVKKADVLKILRDYDRDSTGQIHFDDFKEVTTDWMLDRDPQEEIYKAFRLFDDDSTGKISVRNLRRVARELGENMTDDELRSMIDEFDKDGDGEINENEFLSIMTGD 625
            + ++L+      K+  KKRRELSEEQKQEIK+AFELFDTDKD AIDYHELKVAMRALGFDVKKADVLKIL+DYDR++TG+I F+DF EV TDW+L+RDP EEI KAF+LFDDD +GKIS+RNLRRVARELGENM+D+ELR+MI+EFDKDGDGEIN+ EF++IMTGD
Sbjct:    1 MSLALRSELVVDKTKRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTGD 166
The following BLAST results are available for this feature:
BLAST of TCONS_00050813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CETN32.000e-8275.90Centrin-3 OS=Homo sapiens GN=CETN3 PE=1 SV=2[more]
back to top