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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=transcript|length=1619bp
TGAGTTTTAGGATAAGTGTCTTCATTTATAAATTATCATCTGAGATCTGA
GACCCAAGTGTTATTATATTATAAGAATTAATTTTCTCTTCTTCAAAAGG
TGACatataaaattaaattattaattattaaaaATGAGTTTAAAAGGATT
TGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGAATTGAGcgaag
aacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTGATACTGATAAA
GACAATGCTATTGATTACCATGAACTAAAGGTAGCAATGAGGGCGCTTGG
TTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACGCGATTATGATC
GCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAGAAGTCACAACA
GACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCTACAAAGCATTCCG
CCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTACGGAATTTACGAC
GTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGACGAATTGAGATCG
ATGATTGACGAATTCGATAAAGATGGTGATGGCGAAAtTAACGAAAACGA
ATTCCTTTCAATTATGACTGGTGACACGTGATGGTGAGAGGTGCAATCGA
AATGATAatgtatttctttttcaatggttttTATCTCTTCTAACTGTTCT
TTCTATGTGATTTGATGGTATGAATGAACTTACTACTGATAATAGAATGG
TGAGGTTTAATATTTTGTATTGAAATAGTTGGGAATATTCCTGAGATAAC
ATATACATCGTTTGAACCAATATTTATAATCGTACAGCTTCTAGCTGGAT
TTACATGCTTTACGATCCTCATTCTATACTGGTACAAAAACATAATGCTG
AAGGAGGTTTGTTGGGTCTGAAAAAACTGGATCCCTCGTTTTAAATGTGA
ACATCTATCCATCTTTCAATTCAAGCTAAGATTGATCAAAGTTCTAACGT
CTCAAACGGATTTTCTCTCGATGTTGCGAAATTGCTGAAATGTTCAAATA
TTGTTGATATTccgcaaaatttcatgaatcgggaaaatatttttgtaaag
tcCTTTCGATCTAAGATGAAAATTTGGTTGTGACCAGTGATTTGTTCCCT
GCTCAGTCACACCATCACACCGAAATTTCTACCTTTttacaagagaaaaa
ttcaTTATTTAACGAGCTGTCGAATATGAAATTTTACATCTTTATACAAT
TTTCAAAGAGATTTTGGTTGCCAAGAGTTCATTGGGATGTATCTTTTGTT
TACGAgtgaattcttataaaaacacgcGAAGAAACCTGAAGAAGCTTGTT
TCTTGAAGttgaattcaaatttaaagatttATTACGACCATTTGCTCCCT
AAATAGTTGTTTGAGttaaattttgagcaaatttaaTTCTTAAATATATT
CGCAGGGTTCGGCTGAATGCATAATTTTTTAACACTAGGGACTTATATAT
TGTATATATATTGTGACATAATAGTTAGTTGTTTATTTGTATGAAGAAGT
TTTCATAttggtaaaatattttaatcacaatttttttgttttttatccat
tttctaAATTACGGTTAGG Run BLAST on NCBI protein sequence of TCONS_00050813-protein >TCONS_00050813-protein ID=TCONS_00050813-protein|Name=TCONS_00050813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MSLKGFADKSKSGLKKRRELSEEQKQEIKEAFELFDTDKDNAIDYHELKV
AMRALGFDVKKADVLKILRDYDRDSTGQIHFDDFKEVTTDWMLDRDPQEE
IYKAFRLFDDDSTGKISVRNLRRVARELGENMTDDELRSMIDEFDKDGDG
EINENEFLSIMTGDT Run BLAST on NCBI transcript from alignment at scaffold_189:335389..339852+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=transcript|length=4464bp|location=Sequence derived from alignment at scaffold_189:335389..339852+ (Clytia hemisphaerica)
TGAGTTTTAGGATAAGTGTCTTCATTTATAAATTATCATCTGAGATCTGA
GACCCAAGTGTTATTATATTATAAGAATTAATTTTCTCTTCTTCAAAAGG
TGACatataaaattaaattattaattattaaaaATGAGTTTAAAAGGATT
TGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGAATTGAGcgaag
aacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTGATACTGATAAA
GACAATGCTATTGATTACCATGAACTAAAGGTAAGCTCTCATTGACTTTC
AATAATACATCAATGAATATTGGTCATGGCGCTCTAAATAGGCCTTGAAC
TTAGAACGCCATGATGTTGGTACATTTTGTTCGTCTTATTTGTCGACCTT
TTTAACCcaattcatactaggcttttaagGCCGTTCAAAACTCGTAAAAA
GTAAATCACAACGAAGCACACGTCGTCTCACAATTCATTCGGTTGGTAAA
AGAGTCAGATTTTGCAACCCTTCTGTGACGTCATGAAACGATACAaatac
acctatcaaccttAGCGGCGCGGTCAACCTTTTAAGGAGACTGGTAACGA
AATACGAGTAATTCACCAAAAGCTGGGATATCCCATTCTTTCTTTTAGAG
TAACActtgatttgttttgtttttgatttgattgttacACTACGTGATTT
TCTGGAGAGAAAAAACCTGATGCATGTTCCCTTTCGCTTTATCACGTCAA
AAGACAAAGGATGTTTCAGAAGTGAAAAcgataaaaaaaagatttattct
CGGCGCATGCCATTTTTAGGCAACGtttaaaaacaaaccaaattcCCGTC
AAAACTTCATGGCATATAAAGTGCAGTGGAGTGTAACATATTTTTAATGT
TTGGAGCCCAGGTTTTCCAGGCTCCAAACattagattttttgacgtcatt
ttaactTCCCCATAACTTCTCCCGGGTAGAAGAGGTCGTGCGTTGAAGGA
GGTTCGGGTAGGAGGATGTTGGATATTATAAAACCCACCGGAGGAAGgct
tttttattcaaagttttacCAGAACTTTTAAATCACAGTTCGATGTAAAA
GCTTTCTGCTGTTCATATTTGCGGTTCCATTTGATCTTTTATTGAACATT
TATTACACGTGTTTTATAGATTAGTAAACGAATGACGAATTTCTCAGAAA
CGTATCGAGAAAATAAAGCAGGTCCTAAAATTCAAGTTctacaaaaatga
aattgatatacttttcttaaaattcatTCTTTTACTTAACCCCATTCATT
TTATTGTCCATAtctcaaattattttgattggcaGCAAAAAAGTTCCAAA
CTATTGGCcatagctcctgaccacttgatttaaagtgGCATGTTTTTTTT
AGAAGGAGTATATCAAATAGCTTTCCAACAGTTCTAAAATGAGCTTGTAG
CTCTCAAGCTATAAGCTTTTATGCCAATTTTCACACTGAAAGGGCACAAG
TTTATTTTCAGCATGATgttatgttttttcttgtattttcttaACGCTAA
CAAGTATAGTAGAATTTTCTCGAACCTGCTTTTGTTACATTCAAAAAAGG
GAATTAGGAAGGTAAAAGTCATTATTGACATCATTTTTTATGTTCGAGCT
ACTTGAAAATGCACTGGATCAAGATCTGTCCAGATATTTTAGtttgagat
ttaaaaaaactcgagttagaaagactgataaaaaatgaatttagcCGAGA
GTGCTCACACAATTTTCAAAGAGACCAAACTTTAGAAAGAGAGGTTGAGA
AGCAAGAGAGTCTTCTTCAACAATCTTCAGCTTTGAGTTGGCGGGAGGGG
GGTTGCTTATTTGTCTGGGCCAGGGAAATGCAATATGAAAGGTTAATGTT
GGCTGAAAATACTTGACGTTAGAAGTGTACAAATTTGACGTATGTTCCTT
TGAATGTAAAACCAGAAATGACTCATTAACAGACCTTTTCATAGATTACG
TCATGggcaacgcttacctcgtttaCAAAGTATTGCTATgatggtaattg
attcccagaggTGTTTTAAAGAAGTTTGAAACTCTATTTGTAAAAGTAAC
ACTTGAAGACTTTTTAATAACCCTATAATGTTTTCAAAACGAGGTAGTCG
AAATGATTTATGAAGATGACTCGTTCCTTTCTCGCTTTCCGAATTTAAAA
TTTACGTATTCCTTTTTCTTGTACTTTGTAGGTAGCAATGAGGGCGCTTG
GTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACGCGATTATGAT
CGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAGAAGTCAGTAA
GTTTTAAATATAATAGTTGTGGATATTATTTTCGTTGATGTTGATACTTT
CAGATACTTTTGGGGGTTAGCCAACTTAGCCCTCTCCCATGGAGTGAACG
GGAAATAGGGTCTCAGAGAACTGGAACGCTGAAAAAGTTTGTATGACCTT
CTCCAAATTTTTgcacttatttaaaaaaaaattagttgttgtcgaaataa
aagaaatagctactttgtcaaaaaaacaaaaattgtcaaagatttttcaa
tacttcGGCTGTTTCTTGGATTGGATCCCTCCCATTAGAATTATGCTCTG
TCATTAGGTTTTTAAGAGGaattaaatttttatcgaaTACGGGATCGTAT
CGAATAATGGGAAGCCGAGCAAGGCATAAGGTTGGCTGTGTATATCAGAA
CTTGAGTCCATTCATCAAAACGTTCTTCTTTCTTTATAGCAACAGACTGG
ATGCTTGATCGTGATCCTCAAGAAGAGATCTACAAAGCATTCCGCCTCTT
TGATGACGATTCAACCGGCAAGATCAGTGTACGGAATTTACGACGTGTGG
CAAGGGAGTTAGGTGAAAATATGACGGACGACGAATTGAGATCGATGATT
GACGAATTCGATAAAGATGGTGATGGCGAAAGTAAGGCTCTCTTTACACT
GTAAAAGCCACTTAAGTATATAACTTGTTTCTGTTGAGAATTGGCCGTTT
TTATACAAGTCTTCTTACTTTATCAAATAGGATAAAGAAACTTTCGTGGT
CGGATTTGTTTTGGGAATtcaaataattcaaattcaaattttttggacgC
TGTCAACTAAGAATTTAacacaatcaaaacaaaatttcttttggacCAAA
AAGCACGTTACCTGCGaaaaacgaattttcaaaatttaatttgtAATATT
ATAAAGATGGACCTTATAACCTATTgtagtaaattttggctcagtctcga
tttttcttttttataacattttcatgctttgaaagttttttcgaCATTTT
GAAGACTGCATGAAGGTGAACTTGGATTggctattttttttttaaatggt
ctACTATGACgcgatttttgtttgtttttcagtTAACGAAAACGAATTCC
TTTCAATTATGACTGGTGACACGTGATGGTGAGAGGTGCAATCGAAATGA
TAatgtatttctttttcaatggttttTATCTCTTCTAACTGTTCTTTCTA
TGTGATTTGATGGTATGAATGAACTTACTACTGATAATAGAATGGTGAGG
TTTAATATTTTGTATTGAAATAGTTGGGAATATTCCTGAGATAACATATA
CATCGTTTGAACCAATATTTATAATCGTACAGCTTCTAGCTGGATTTACA
TGCTTTACGATCCTCATTCTATACTGGTACAAAAACATAATGCTGAAGGA
GGTTTGTTGGGTCTGAAAAAACTGGATCCCTCGTTTTAAATGTGAACATC
TATCCATCTTTCAATTCAAGCTAAGATTGATCAAAGTTCTAACGTCTCAA
ACGGATTTTCTCTCGATGTTGCGAAATTGCTGAAATGTTCAAATATTGTT
GATATTccgcaaaatttcatgaatcgggaaaatatttttgtaaagtcCTT
TCGATCTAAGATGAAAATTTGGTTGTGACCAGTGATTTGTTCCCTGCTCA
GTCACACCATCACACCGAAATTTCTACCTTTttacaagagaaaaattcaT
TATTTAACGAGCTGTCGAATATGAAATTTTACATCTTTATACAATTTTCA
AAGAGATTTTGGTTGCCAAGAGTTCATTGGGATGTATCTTTTGTTTACGA
gtgaattcttataaaaacacgcGAAGAAACCTGAAGAAGCTTGTTTCTTG
AAGttgaattcaaatttaaagatttATTACGACCATTTGCTCCCTAAATA
GTTGTTTGAGttaaattttgagcaaatttaaTTCTTAAATATATTCGCAG
GGTTCGGCTGAATGCATAATTTTTTAACACTAGGGACTTATATATTGTAT
ATATATTGTGACATAATAGTTAGTTGTTTATTTGTATGAAGAAGTTTTCA
TAttggtaaaatattttaatcacaatttttttgttttttatccattttct
aAATTACGGTTAGG Coding sequence (CDS) from alignment at scaffold_189:335389..339852+ >TCONS_00050813 ID=TCONS_00050813|Name=TCONS_00050813|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_189:335389..339852+ (Clytia hemisphaerica)
ATGAGTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAG
ACGGGAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAAT
TATTTGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTA
GCAATGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAAT
TCTACGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATT
TCAAAGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAG
ATCTACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAG
TGTACGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGG
ACGACGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGC
GAAAtTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAAT
GAGTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGAC
GGGAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTA
TTTGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGC
AATGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTC
TACGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTC
AAAGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGAT
CTACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTG
TACGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGAC
GACGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGA
AAtTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAATGA
GTTTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGG
GAATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTATT
TGATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGCAA
TGAGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTA
CGCGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAA
AGAAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCT
ACAAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTA
CGGAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGA
CGAATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGAAA
tTAACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGAATGAGT
TTAAAAGGATTTGCTGATAAATCCAAAAGTGGCTTGAAGAAGAGACGGGA
ATTGAGcgaagaacaaaaacaagaaataaaAGAAGCTTTCGAATTATTTG
ATACTGATAAAGACAATGCTATTGATTACCATGAACTAAAGGTAGCAATG
AGGGCGCTTGGTTTTGATGTAAAGAAAGCTGACGTGTTGAAAATTCTACG
CGATTATGATCGCGATTCAACAGGCCAAATTCATTTTGATGATTTCAAAG
AAGTCACAACAGACTGGATGCTTGATCGTGATCCTCAAGAAGAGATCTAC
AAAGCATTCCGCCTCTTTGATGACGATTCAACCGGCAAGATCAGTGTACG
GAATTTACGACGTGTGGCAAGGGAGTTAGGTGAAAATATGACGGACGACG
AATTGAGATCGATGATTGACGAATTCGATAAAGATGGTGATGGCGAAAtT
AACGAAAACGAATTCCTTTCAATTATGACTGGTGACACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00050813-exon-scaffold_189-1491911889:335389..335668 | TCONS_00050813-exon-scaffold_189-1491911889:335389..335668 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1510915933:335389..335668 | TCONS_00050813-exon-scaffold_189-1510915933:335389..335668 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1575043694:335389..335668 | TCONS_00050813-exon-scaffold_189-1575043694:335389..335668 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1491911889:337620..337734 | TCONS_00050813-exon-scaffold_189-1491911889:337620..337734 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1510915933:337620..337734 | TCONS_00050813-exon-scaffold_189-1510915933:337620..337734 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1575043694:337620..337734 | TCONS_00050813-exon-scaffold_189-1575043694:337620..337734 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1491911889:338178..338369 | TCONS_00050813-exon-scaffold_189-1491911889:338178..338369 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1510915933:338178..338369 | TCONS_00050813-exon-scaffold_189-1510915933:338178..338369 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1575043694:338178..338369 | TCONS_00050813-exon-scaffold_189-1575043694:338178..338369 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1491911889:338821..339852 | TCONS_00050813-exon-scaffold_189-1491911889:338821..339852 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1510915933:338821..339852 | TCONS_00050813-exon-scaffold_189-1510915933:338821..339852 | Clytia hemisphaerica | exon |
| TCONS_00050813-exon-scaffold_189-1575043694:338821..339852 | TCONS_00050813-exon-scaffold_189-1575043694:338821..339852 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:335389..339852 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00050813 vs. Swiss-Prot (Human)
Match: CETN3 (Centrin-3 OS=Homo sapiens GN=CETN3 PE=1 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 2.000e-82 Identity = 126/166 (75.90%), Postives = 149/166 (89.76%), Query Frame = 2
Query: 128 LKMSLKGFADKSKSGLKKRRELSEEQKQEIKEAFELFDTDKDNAIDYHELKVAMRALGFDVKKADVLKILRDYDRDSTGQIHFDDFKEVTTDWMLDRDPQEEIYKAFRLFDDDSTGKISVRNLRRVARELGENMTDDELRSMIDEFDKDGDGEINENEFLSIMTGD 625
+ ++L+ K+ KKRRELSEEQKQEIK+AFELFDTDKD AIDYHELKVAMRALGFDVKKADVLKIL+DYDR++TG+I F+DF EV TDW+L+RDP EEI KAF+LFDDD +GKIS+RNLRRVARELGENM+D+ELR+MI+EFDKDGDGEIN+ EF++IMTGD
Sbjct: 1 MSLALRSELVVDKTKRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTGD 166
The following BLAST results are available for this feature:
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