TCONS_00054246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054246
Unique NameTCONS_00054246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054246 ID=TCONS_00054246|Name=TCONS_00054246|organism=Clytia hemisphaerica|type=transcript|length=1303bp
ATCTACTCAAGAACTGAGGAATATGTtaagagaaaataaaaagtctCAAA
ATGAGGTTATCTTTGGTTCTTATTGCATCGGCATTGGTTGTTGCTGTTTC
AGCAGGATGTCATCAAGACAAGTCCCAATTTTGCTCGGGATGGAAATTAG
TTGGATATTGCAAGAGAAGCAGCAAACATCACACATGGATGAAAGAACAT
TGTGCTGATACGTGTGATTTTCCTTGCCCTACTACTCAACCGCCAACTTC
GGGCTGTGCGGATAAAAATGAAGcatattgcaaaaaatatgcTCTGTATT
GTTTCCGTGATGgttggaaaaattatttgaaagttCAATGCCCCAAAACT
TGCAAGGCTTGTGGAGgtgCAGCCACGACCCCACAAGGTCCCCTACCAAC
ACAAGCATCTGGACAATGTGGAGTCAAAAGCGATGGTCACACCCGTATTG
TTGGTGGTACTAATGCACGACCTGGTGATTGGCCGTGGCAGGTGCAAATC
GATTTGAACACTGACTGGGGGCGTTATTGGTGTGGAGGCACCTTGATCAA
TGACGAATGGATTGTCAGTGCTGCTCATTGCTTTGAAGATGATACCAGAG
CGAGAAACTATGACATCTATTTGGGTGAGCACGATATCCGTAGCAAAAGT
GGCAACGAACAGAAAATGGAAGTCGCTGAAATCATCATGCATCCTGGATA
TAAATACGGAGATGTTGACAACGATATGGCTCTCATCCGATTGAAAAAGA
AGGCTTCATTCAACACTTACGTTCGCCCAGCATGTTTCCCCGATTCATCT
GTAAAATTTCCTAGTGGTGAAGAATGTTACGTGACCGGATGGGGAGCTCT
TAGGACCGGTGGTTCATCACCAAGAATCTTGCAACAAGCCAAAATTCCGC
TTGTTCCACAACACGAATGTCAAAGAGCTATGGGAAGCGATATCACAAAG
AACATGTTCTGTGCTGGATATGCCAACAAAAGAATCGACTCCTGCCAAGG
AGATTCCGGGGGTCCACTTGTCTGTAAAAAGCGAACTTCAACTGGGCAAG
ATGTTTGGTATTTATGGGGAGTCGTTTCATGGGGCATTGATTGTGCGTCA
CCAGGATATTATGGTGTCTACTCCAGCATTGAGAATATGGGATCATGGGT
CACAAACACCTTGAAAAGCCgaagaacttaaaatttttgaattttgttaa
tttttttttattcagtaATATTAAATTCCAACCTAGCAAATAACTTCTTT
TTTAATTCCACTTTGATCTGTGGGTTCTACTCACGCCAGTGTTCAATACT
GAA
Run BLAST on NCBI

protein sequence of TCONS_00054246-protein

>TCONS_00054246-protein ID=TCONS_00054246-protein|Name=TCONS_00054246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MRLSLVLIASALVVAVSAGCHQDKSQFCSGWKLVGYCKRSSKHHTWMKEH
CADTCDFPCPTTQPPTSGCADKNEAYCKKYALYCFRDGWKNYLKVQCPKT
CKACGGAATTPQGPLPTQASGQCGVKSDGHTRIVGGTNARPGDWPWQVQI
DLNTDWGRYWCGGTLINDEWIVSAAHCFEDDTRARNYDIYLGEHDIRSKS
GNEQKMEVAEIIMHPGYKYGDVDNDMALIRLKKKASFNTYVRPACFPDSS
VKFPSGEECYVTGWGALRTGGSSPRILQQAKIPLVPQHECQRAMGSDITK
NMFCAGYANKRIDSCQGDSGGPLVCKKRTSTGQDVWYLWGVVSWGIDCAS
PGYYGVYSSIENMGSWVTNTLKSRRT
Run BLAST on NCBI

transcript from alignment at scaffold_242:1092640..1098293+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054246 ID=TCONS_00054246|Name=TCONS_00054246|organism=Clytia hemisphaerica|type=transcript|length=5654bp|location=Sequence derived from alignment at scaffold_242:1092640..1098293+ (Clytia hemisphaerica)
ATCTACTCAAGAACTGAGGAATATGTtaagagaaaataaaaagtctCAAA
ATGAGGTTATCTTTGGTTCTTATTGCATCGGCATTGGTTGTTGCTGTTTC
AGCAGGTATAAATCTAAACTTTGATAAATAAAATGGTCGAGGATAGATAG
TTGTTTACCGAGTTCTTTAGGCTGCAAACAAAATTCCCCAGTTAAAGGCG
CTGCTGACTAGGCTCCGAACTTAGCTGACGGAGTTGGGAAATCAGTAGAT
CACAAGTATCTCTTACAGGGTTGACTTTTGGTCATTTCGCCTCTTTTTAG
ATTtggtttaagaaaaaaaattttttttgcatccgCCAGAATACAAATTT
TGTCAATCAGGATGAAAATTATAGTCTACAACAAGAaccaatttttgtta
aaaactgATATCTGACAGGATCAATTTATTGAGCTTTAACGGACTCAGTA
TTCAATCCCAGCGCTCGATTTAATCAACTTTTATCGAAATTTGTTCTCGC
TTTAGGATGTCATCAAGACAAGTCCCAATTTTGCTCGGGATGGAAATTAG
TTGGATATTGCAAGAGAAGCAGCAAACATCACACATGGATGAAAGAACAT
TGTGCTGATACGTGTGATTTTCCTTGCCCTACTACTCAACCGCCAACTTC
GGGTAAGAACTACAATAAACAGTTCAATTTTCACCCAACAGACTCACACA
GACTTTTTCTGAAGGGTCTACTTCttttgaagcatttttatttttacttg
ctatacacccctgtgtcacagacccgatgGGACCCCAGTTCCATTGGAGA
ATTTGGCCATAAAATACGTCCCCGGTGGGATAAATAGCCTACTTTTTCAG
CCATACtttgaaattgactttgatttcatccccaattaaaattcaaaagg
aaaaattgcacttcaaaatcatccccactggatttttttaaccTGAGAAC
AATAGGATTTTTATCCCCCAATGGGATTTCGAAAGAAATTGTCATCCCGA
ATGTGGGAAGAAGTTTcgccggggctgtgagacaggggtgttgttaTATT
GATatcagttcttttgtttttgtctttGGTGGGCCAGgcattatctggca
cccagatggtgaaattttcatccgacacgctaaagctctgaaggtcggga
aaattttcaacatctggaaggttcacatacggaattttgcaagaccgcaT
CAAGAATTTTGAAGCGGAAGGTCTGGTatcccagccctcgttttcgagga
ttggcgggtccaaccaaaTTATATTTTTAGGTTTACGGGTAAGGGTTTTT
GAAGCCGACTGGGGacgcggcacatcaaaggccgactatcattcctctcc
gatgggaaattggcccgctccctttaaagctttagcgtgggcggccgcca
atctgCCATCAGAATATCCGATAAGGCCAGGCATGGTCCTAAATTTTACC
AACCCTGTATCAAGACTGCTTGACTCTTCAATAAATACAACGTTTCAACA
TCTGATTACCACCATAGGCTGTGCGGATAAAAATGAAGcatattgcaaaa
aatatgcTCTGTATTGTTTCCGTGATGgttggaaaaattatttgaaagtt
CAATGCCCCAAAACTTGCAAGGCTTGTGGAGGTAGGTTATGATATCACAT
ACTATTTCATATCGAGTACTTTATTCATTCTGATAACATCTTCTAAGTTT
ATAAGTGATTCCTAATTATAAATGTCCTTCTAATCACCCTTTGTCAGACT
ATATAGACACCAAACGATCTACAGCATATAAATTCTATCAGGTAGGATGA
CAGTAGGTCATGGATGACCTTGCTATttcctttattttattttttaggtg
CAGCCACGACCCCACAAGGTCCCCTACCAACACAAGCATCTGGACAATGT
GGAGTCAAAAGCGATGGTCACACCCGTATTGTTGGTGGTACTAATGCACG
ACCTGGTGATTGGCCGTGGCAGGTACATTTGAAGACATAAATAGATATAG
AAAGACATGAAAAACAAAAGGACCTTTTACCTCAAGGCAACCGATTTCCG
TATTAGAATCCaagttaaaaatgaaaatatgttaatcacggaactaattt
tcgtgaaTATTGAACAATTTTGtctaagtttttgaaaatagcTTTGACTT
AGCTACTACGACAGTTAACAAAATGccgtaaaaagtaaaaatcaatcATA
CCTTCACCCTTTCttatgataaaaaaatcaaaggtttgattaaagtctat
tcacgataagtgtgcactcttttatcttttacctagaacttttgaaggaa
ttctttaatctttataaaaatagtatcattggaaagatattagtgagtgg
aacaatttataataaataaagaaatatttagaaaaattctaaaaatgaag
atgaaaacgaagaagaaaaaaatgaagatcactgtgaaaaaaattctcaa
aaattctcattcagtcaaaagatatcaaacaaagttataagctgattgac
gtctaaaaatgctgttttctgctgttttctgatgttttttggggtcaatc
acttattaactttgtatcataactttatattgaataaatattttagttaa
attttttcacagtgacgacctcctaagatcaaagaatctctccagtgaaa
atgaaagttatagcacttttctacaagatcttcttttttttcttcttcat
tttcatctttgtttttagatttttttccgagatttttttatttcaaattg
ttccactcactaatatctttccaatgataccaaatttgtaaagattgaag
aatgccttcaaaagttataggtaaaagaaaaaagagtgcacacttatcgt
gaatagactttagattcGTTATCTCCCCAAAACCTATCAAGTTTTAATCT
GATAATAAATCGTCCGAGAATTAACAAATCCAAGGCAAGGGGCATTCATC
TTTGAATCTAATCTGAGCCGCAGACTTCCTgtataagaaactcttttcgc
tagagAATGAGCAGAAGTCTACTTAAAATCGGGCTTCTATGactgggctg
ttccattaaaaagccatacaggggggtggacgaaaaTCTTCAAGAATaag
ataccccctggaaaatggtaaaatttgcaaaaatacgcTTATaaagattc
ttttcataccttaaaatgagggtggacgaactaaaatcagtcttttctcc
ctggaaattttagaataactttttaccccccttGGGAGAATGAAAAGACA
CCCCTGGAAATTCTGCTTGAATtgccccctggaaatgttcgtaaACCCCC
CCCctcctgtatggatataaaatggaatggcccattcttCTTTTATTACT
AGGTGCAAATCGATTTGAACACTGACTGGGGGCGTTATTGGTGTGGAGGC
ACCTTGATCAATGACGAATGGATTGTCAGTGCTGCTCATTGCTTTGAAGA
TGATACCAGAGCGAGAAACTATGACATCTATTTGGGTAAGCTCCGCATAA
TGTCTTCCTCTATATAATTTTTCAAAGCAACAACATTTTATGTACAgtaa
aatgtatataaaatgATCGATATGGATATGATATCTATCTATCTTTTACA
AGAAGTAAGCCTCTTACAGCCCACATTGGGAGTGGGGAGACTGAATACCA
TGAGTATTACAGTGTATGAATGAGCCCCATTAATTCCAGGATTTAGTCTG
TATCCCCCTATATTGAGAGGGTGTGACATCCAGGGTAATAACATCTGGAA
AATATAAATCCAGGGGTctggtttttcgagtgtaaaaatccagggtggta
aGTAAAATAAggtggaaaatccagggtggtcagtaaaatgagctTCAAAG
CCGGGTGGTCAGTAAAGGAAgtcgaaaatccaggttgaCCATAAAATGAG
TAAAAGAAATCCAAGGAGGTCCGGAAAGATTGAAAAATAAGTACCTTTAC
caaaaagacctcctcaacacAGGTGgtacatttttttctggaatatcCCA
ATATTACACTGTGACGACAAATGAGCATTCAATTTAGCGCGTTTTCAGCA
AATATAAAAGTAACAATAGCAATCATCCAGTATCTTAGATGAATGCCGTT
CTAATCAAATCACAAataagaaacaaagaaagattcAATCAAAGAGAGCC
GTCTTGGAAGATATTAAAAAACTTAAGTTTTGTGAAAAGTGCaccatttt
ctaaaatttctttcTATTCTTCTTCTGCTCTGCATTATTTTAACCGTCTT
TTTCTTCCCTCCAAAAAACAAGATTCGATAAAGGCTAGCAATAAAACTTC
AATACCTTTTTTACAAGAGGGAGTTTTAAATCACTTTTTTAAATCCCATT
CCCTACATACAGGTGAGCACGATATCCGTAGCAAAAGTGGCAACGAACAG
AAAATGGAAGTCGCTGAAATCATCATGCATCCTGGATATAAATACGGAGA
TGTTGACAACGATATGGCTCTCATCCGATTGAAAAAGAAGGCTTCATTCA
ACACTTACGTTCGCCCAGCATGTTTCCCCGATTCATCTGTAAAATTTCCT
AGTGGTGAAGAATGTTACGTGACCGGATGGGGAGCTCTTAGGACCGGTGG
TTCATCACCAAGAGTAAGTGCTGACGAATGTACCGAGCTTTATAATTAAC
TTAGTTTTTCGCCGAAAACTGAATTAAAGGGAATTAGGGGTGGGTTTACA
TCTGAAGGGGAGATTCGATTGAGACACCCTTTGTCGAAAACAATGAAGaa
cataaataaaacaaaagatcaAAATGGCTTGAACAAATTCTTTTATAAAG
TTAATCGACCTACCCCTAGTTATAGCAATTTTTACAAGAGGTTGGTTTGG
GTATCTCTTATGAGAAAGGACGTAACGAGGAGAAGATCGATTAAGATTTT
GTTATTTATCGTATTATTTCAATTATATTTCTTAATCGATTCTCTCCTAG
ATGTAAACCTACCCTAGCATATGGACATGCTTACAGTAAGAAAAACATAA
TGACTTTTAAACCCAGATAAACTCGTACCTAATTCCCTTTTGTAGGGTTA
GAGTAAAAGGTACAAAGTCACAAGAAGATGGTGATGAAATCAGTTTAGGT
GACTTCTCTGTCGTATGCTAGGGACCTGTTAGCAAGTGTGACCGCATTAA
CGAATTAACGAATGGTTTTATCTGGGATTATCTATCAGCAAGACTGAAAT
ggatttgattttctttcattCAATAGATCTTGCAACAAGCCAAAATTCCG
CTTGTTCCACAACACGAATGTCAAAGAGCTATGGGAAGCGATATCACAAA
GAACATGTTCTGTGCTGGATATGCCAACAAAAGAATCGACTCCTGCCAAG
GAGATTCCGGGGGTCCACTTGTCTGTAAAAAGCGAACTTCAACTGGGCAA
GATGTTTGGTATTTATGGGGAGTCGTTTCATGGGGCATTGATTGTGCGTC
ACCAGGATATTATGGTGTCTACTCCAGCATTGAGAATATGGGATCATGGG
TCACAAACACCTTGAAAAGCCgaagaacttaaaatttttgaattttgtta
atttttttttattcagtaATATTAAATTCCAACCTAGCAAATAACTTCTT
TTTTAATTCCACTTTGATCTGTGGGTTCTACTCACGCCAGTGTTCAATAC
TGAA

Coding sequence (CDS) from alignment at scaffold_242:1092640..1098293+

>TCONS_00054246 ID=TCONS_00054246|Name=TCONS_00054246|organism=Clytia hemisphaerica|type=CDS|length=7917bp|location=Sequence derived from alignment at scaffold_242:1092640..1098293+ (Clytia hemisphaerica)
ATGAGGTTATCTTTGGTTCTTATTGCATCGGCATTGGTTGTTGCTGTTTC
AGCAGGATGTCATCAAGACAAGTCCCAATTTTGCTCGGGATGGAAATTAG
TTGGATATTGCAAGAGAAGCAGCAAACATCACACATGGATGAAAGAACAT
TGTGCTGATACGTGTGATTTTCCTTGCCCTACTACTCAACCGCCAACTTC
GGGCTGTGCGGATAAAAATGAAGcatattgcaaaaaatatgcTCTGTATT
GTTTCCGTGATGgttggaaaaattatttgaaagttCAATGCCCCAAAACT
TGCAAGGCTTGTGGAGgtgCAGCCACGACCCCACAAGGTCCCCTACCAAC
ACAAGCATCTGGACAATGTGGAGTCAAAAGCGATGGTCACACCCGTATTG
TTGGTGGTACTAATGCACGACCTGGTGATTGGCCGTGGCAGGTGCAAATC
GATTTGAACACTGACTGGGGGCGTTATTGGTGTGGAGGCACCTTGATCAA
TGACGAATGGATTGTCAGTGCTGCTCATTGCTTTGAAGATGATACCAGAG
CGAGAAACTATGACATCTATTTGGGTGAGCACGATATCCGTAGCAAAAGT
GGCAACGAACAGAAAATGGAAGTCGCTGAAATCATCATGCATCCTGGATA
TAAATACGGAGATGTTGACAACGATATGGCTCTCATCCGATTGAAAAAGA
AGGCTTCATTCAACACTTACGTTCGCCCAGCATGTTTCCCCGATTCATCT
GTAAAATTTCCTAGTGGTGAAGAATGTTACGTGACCGGATGGGGAGCTCT
TAGGACCGGTGGTTCATCACCAAGAATCTTGCAACAAGCCAAAATTCCGC
TTGTTCCACAACACGAATGTCAAAGAGCTATGGGAAGCGATATCACAAAG
AACATGTTCTGTGCTGGATATGCCAACAAAAGAATCGACTCCTGCCAAGG
AGATTCCGGGGGTCCACTTGTCTGTAAAAAGCGAACTTCAACTGGGCAAG
ATGTTTGGTATTTATGGGGAGTCGTTTCATGGGGCATTGATTGTGCGTCA
CCAGGATATTATGGTGTCTACTCCAGCATTGAGAATATGGGATCATGGGT
CACAAACACCTTGAAAAGCCgaagaacttaaATGAGGTTATCTTTGGTTC
TTATTGCATCGGCATTGGTTGTTGCTGTTTCAGCAGGATGTCATCAAGAC
AAGTCCCAATTTTGCTCGGGATGGAAATTAGTTGGATATTGCAAGAGAAG
CAGCAAACATCACACATGGATGAAAGAACATTGTGCTGATACGTGTGATT
TTCCTTGCCCTACTACTCAACCGCCAACTTCGGGCTGTGCGGATAAAAAT
GAAGcatattgcaaaaaatatgcTCTGTATTGTTTCCGTGATGgttggaa
aaattatttgaaagttCAATGCCCCAAAACTTGCAAGGCTTGTGGAGgtg
CAGCCACGACCCCACAAGGTCCCCTACCAACACAAGCATCTGGACAATGT
GGAGTCAAAAGCGATGGTCACACCCGTATTGTTGGTGGTACTAATGCACG
ACCTGGTGATTGGCCGTGGCAGGTGCAAATCGATTTGAACACTGACTGGG
GGCGTTATTGGTGTGGAGGCACCTTGATCAATGACGAATGGATTGTCAGT
GCTGCTCATTGCTTTGAAGATGATACCAGAGCGAGAAACTATGACATCTA
TTTGGGTGAGCACGATATCCGTAGCAAAAGTGGCAACGAACAGAAAATGG
AAGTCGCTGAAATCATCATGCATCCTGGATATAAATACGGAGATGTTGAC
AACGATATGGCTCTCATCCGATTGAAAAAGAAGGCTTCATTCAACACTTA
CGTTCGCCCAGCATGTTTCCCCGATTCATCTGTAAAATTTCCTAGTGGTG
AAGAATGTTACGTGACCGGATGGGGAGCTCTTAGGACCGGTGGTTCATCA
CCAAGAATCTTGCAACAAGCCAAAATTCCGCTTGTTCCACAACACGAATG
TCAAAGAGCTATGGGAAGCGATATCACAAAGAACATGTTCTGTGCTGGAT
ATGCCAACAAAAGAATCGACTCCTGCCAAGGAGATTCCGGGGGTCCACTT
GTCTGTAAAAAGCGAACTTCAACTGGGCAAGATGTTTGGTATTTATGGGG
AGTCGTTTCATGGGGCATTGATTGTGCGTCACCAGGATATTATGGTGTCT
ACTCCAGCATTGAGAATATGGGATCATGGGTCACAAACACCTTGAAAAGC
CgaagaacttaaATGAGGTTATCTTTGGTTCTTATTGCATCGGCATTGGT
TGTTGCTGTTTCAGCAGGATGTCATCAAGACAAGTCCCAATTTTGCTCGG
GATGGAAATTAGTTGGATATTGCAAGAGAAGCAGCAAACATCACACATGG
ATGAAAGAACATTGTGCTGATACGTGTGATTTTCCTTGCCCTACTACTCA
ACCGCCAACTTCGGGCTGTGCGGATAAAAATGAAGcatattgcaaaaaat
atgcTCTGTATTGTTTCCGTGATGgttggaaaaattatttgaaagttCAA
TGCCCCAAAACTTGCAAGGCTTGTGGAGgtgCAGCCACGACCCCACAAGG
TCCCCTACCAACACAAGCATCTGGACAATGTGGAGTCAAAAGCGATGGTC
ACACCCGTATTGTTGGTGGTACTAATGCACGACCTGGTGATTGGCCGTGG
CAGGTGCAAATCGATTTGAACACTGACTGGGGGCGTTATTGGTGTGGAGG
CACCTTGATCAATGACGAATGGATTGTCAGTGCTGCTCATTGCTTTGAAG
ATGATACCAGAGCGAGAAACTATGACATCTATTTGGGTGAGCACGATATC
CGTAGCAAAAGTGGCAACGAACAGAAAATGGAAGTCGCTGAAATCATCAT
GCATCCTGGATATAAATACGGAGATGTTGACAACGATATGGCTCTCATCC
GATTGAAAAAGAAGGCTTCATTCAACACTTACGTTCGCCCAGCATGTTTC
CCCGATTCATCTGTAAAATTTCCTAGTGGTGAAGAATGTTACGTGACCGG
ATGGGGAGCTCTTAGGACCGGTGGTTCATCACCAAGAATCTTGCAACAAG
CCAAAATTCCGCTTGTTCCACAACACGAATGTCAAAGAGCTATGGGAAGC
GATATCACAAAGAACATGTTCTGTGCTGGATATGCCAACAAAAGAATCGA
CTCCTGCCAAGGAGATTCCGGGGGTCCACTTGTCTGTAAAAAGCGAACTT
CAACTGGGCAAGATGTTTGGTATTTATGGGGAGTCGTTTCATGGGGCATT
GATTGTGCGTCACCAGGATATTATGGTGTCTACTCCAGCATTGAGAATAT
GGGATCATGGGTCACAAACACCTTGAAAAGCCgaagaacttaaATGAGGT
TATCTTTGGTTCTTATTGCATCGGCATTGGTTGTTGCTGTTTCAGCAGGA
TGTCATCAAGACAAGTCCCAATTTTGCTCGGGATGGAAATTAGTTGGATA
TTGCAAGAGAAGCAGCAAACATCACACATGGATGAAAGAACATTGTGCTG
ATACGTGTGATTTTCCTTGCCCTACTACTCAACCGCCAACTTCGGGCTGT
GCGGATAAAAATGAAGcatattgcaaaaaatatgcTCTGTATTGTTTCCG
TGATGgttggaaaaattatttgaaagttCAATGCCCCAAAACTTGCAAGG
CTTGTGGAGgtgCAGCCACGACCCCACAAGGTCCCCTACCAACACAAGCA
TCTGGACAATGTGGAGTCAAAAGCGATGGTCACACCCGTATTGTTGGTGG
TACTAATGCACGACCTGGTGATTGGCCGTGGCAGGTGCAAATCGATTTGA
ACACTGACTGGGGGCGTTATTGGTGTGGAGGCACCTTGATCAATGACGAA
TGGATTGTCAGTGCTGCTCATTGCTTTGAAGATGATACCAGAGCGAGAAA
CTATGACATCTATTTGGGTGAGCACGATATCCGTAGCAAAAGTGGCAACG
AACAGAAAATGGAAGTCGCTGAAATCATCATGCATCCTGGATATAAATAC
GGAGATGTTGACAACGATATGGCTCTCATCCGATTGAAAAAGAAGGCTTC
ATTCAACACTTACGTTCGCCCAGCATGTTTCCCCGATTCATCTGTAAAAT
TTCCTAGTGGTGAAGAATGTTACGTGACCGGATGGGGAGCTCTTAGGACC
GGTGGTTCATCACCAAGAATCTTGCAACAAGCCAAAATTCCGCTTGTTCC
ACAACACGAATGTCAAAGAGCTATGGGAAGCGATATCACAAAGAACATGT
TCTGTGCTGGATATGCCAACAAAAGAATCGACTCCTGCCAAGGAGATTCC
GGGGGTCCACTTGTCTGTAAAAAGCGAACTTCAACTGGGCAAGATGTTTG
GTATTTATGGGGAGTCGTTTCATGGGGCATTGATTGTGCGTCACCAGGAT
ATTATGGTGTCTACTCCAGCATTGAGAATATGGGATCATGGGTCACAAAC
ACCTTGAAAAGCCgaagaacttaaATGAGGTTATCTTTGGTTCTTATTGC
ATCGGCATTGGTTGTTGCTGTTTCAGCAGGATGTCATCAAGACAAGTCCC
AATTTTGCTCGGGATGGAAATTAGTTGGATATTGCAAGAGAAGCAGCAAA
CATCACACATGGATGAAAGAACATTGTGCTGATACGTGTGATTTTCCTTG
CCCTACTACTCAACCGCCAACTTCGGGCTGTGCGGATAAAAATGAAGcat
attgcaaaaaatatgcTCTGTATTGTTTCCGTGATGgttggaaaaattat
ttgaaagttCAATGCCCCAAAACTTGCAAGGCTTGTGGAGgtgCAGCCAC
GACCCCACAAGGTCCCCTACCAACACAAGCATCTGGACAATGTGGAGTCA
AAAGCGATGGTCACACCCGTATTGTTGGTGGTACTAATGCACGACCTGGT
GATTGGCCGTGGCAGGTGCAAATCGATTTGAACACTGACTGGGGGCGTTA
TTGGTGTGGAGGCACCTTGATCAATGACGAATGGATTGTCAGTGCTGCTC
ATTGCTTTGAAGATGATACCAGAGCGAGAAACTATGACATCTATTTGGGT
GAGCACGATATCCGTAGCAAAAGTGGCAACGAACAGAAAATGGAAGTCGC
TGAAATCATCATGCATCCTGGATATAAATACGGAGATGTTGACAACGATA
TGGCTCTCATCCGATTGAAAAAGAAGGCTTCATTCAACACTTACGTTCGC
CCAGCATGTTTCCCCGATTCATCTGTAAAATTTCCTAGTGGTGAAGAATG
TTACGTGACCGGATGGGGAGCTCTTAGGACCGGTGGTTCATCACCAAGAA
TCTTGCAACAAGCCAAAATTCCGCTTGTTCCACAACACGAATGTCAAAGA
GCTATGGGAAGCGATATCACAAAGAACATGTTCTGTGCTGGATATGCCAA
CAAAAGAATCGACTCCTGCCAAGGAGATTCCGGGGGTCCACTTGTCTGTA
AAAAGCGAACTTCAACTGGGCAAGATGTTTGGTATTTATGGGGAGTCGTT
TCATGGGGCATTGATTGTGCGTCACCAGGATATTATGGTGTCTACTCCAG
CATTGAGAATATGGGATCATGGGTCACAAACACCTTGAAAAGCCgaagaa
cttaaATGAGGTTATCTTTGGTTCTTATTGCATCGGCATTGGTTGTTGCT
GTTTCAGCAGGATGTCATCAAGACAAGTCCCAATTTTGCTCGGGATGGAA
ATTAGTTGGATATTGCAAGAGAAGCAGCAAACATCACACATGGATGAAAG
AACATTGTGCTGATACGTGTGATTTTCCTTGCCCTACTACTCAACCGCCA
ACTTCGGGCTGTGCGGATAAAAATGAAGcatattgcaaaaaatatgcTCT
GTATTGTTTCCGTGATGgttggaaaaattatttgaaagttCAATGCCCCA
AAACTTGCAAGGCTTGTGGAGgtgCAGCCACGACCCCACAAGGTCCCCTA
CCAACACAAGCATCTGGACAATGTGGAGTCAAAAGCGATGGTCACACCCG
TATTGTTGGTGGTACTAATGCACGACCTGGTGATTGGCCGTGGCAGGTGC
AAATCGATTTGAACACTGACTGGGGGCGTTATTGGTGTGGAGGCACCTTG
ATCAATGACGAATGGATTGTCAGTGCTGCTCATTGCTTTGAAGATGATAC
CAGAGCGAGAAACTATGACATCTATTTGGGTGAGCACGATATCCGTAGCA
AAAGTGGCAACGAACAGAAAATGGAAGTCGCTGAAATCATCATGCATCCT
GGATATAAATACGGAGATGTTGACAACGATATGGCTCTCATCCGATTGAA
AAAGAAGGCTTCATTCAACACTTACGTTCGCCCAGCATGTTTCCCCGATT
CATCTGTAAAATTTCCTAGTGGTGAAGAATGTTACGTGACCGGATGGGGA
GCTCTTAGGACCGGTGGTTCATCACCAAGAATCTTGCAACAAGCCAAAAT
TCCGCTTGTTCCACAACACGAATGTCAAAGAGCTATGGGAAGCGATATCA
CAAAGAACATGTTCTGTGCTGGATATGCCAACAAAAGAATCGACTCCTGC
CAAGGAGATTCCGGGGGTCCACTTGTCTGTAAAAAGCGAACTTCAACTGG
GCAAGATGTTTGGTATTTATGGGGAGTCGTTTCATGGGGCATTGATTGTG
CGTCACCAGGATATTATGGTGTCTACTCCAGCATTGAGAATATGGGATCA
TGGGTCACAAACACCTTGAAAAGCCgaagaacttaaATGAGGTTATCTTT
GGTTCTTATTGCATCGGCATTGGTTGTTGCTGTTTCAGCAGGATGTCATC
AAGACAAGTCCCAATTTTGCTCGGGATGGAAATTAGTTGGATATTGCAAG
AGAAGCAGCAAACATCACACATGGATGAAAGAACATTGTGCTGATACGTG
TGATTTTCCTTGCCCTACTACTCAACCGCCAACTTCGGGCTGTGCGGATA
AAAATGAAGcatattgcaaaaaatatgcTCTGTATTGTTTCCGTGATGgt
tggaaaaattatttgaaagttCAATGCCCCAAAACTTGCAAGGCTTGTGG
AGgtgCAGCCACGACCCCACAAGGTCCCCTACCAACACAAGCATCTGGAC
AATGTGGAGTCAAAAGCGATGGTCACACCCGTATTGTTGGTGGTACTAAT
GCACGACCTGGTGATTGGCCGTGGCAGGTGCAAATCGATTTGAACACTGA
CTGGGGGCGTTATTGGTGTGGAGGCACCTTGATCAATGACGAATGGATTG
TCAGTGCTGCTCATTGCTTTGAAGATGATACCAGAGCGAGAAACTATGAC
ATCTATTTGGGTGAGCACGATATCCGTAGCAAAAGTGGCAACGAACAGAA
AATGGAAGTCGCTGAAATCATCATGCATCCTGGATATAAATACGGAGATG
TTGACAACGATATGGCTCTCATCCGATTGAAAAAGAAGGCTTCATTCAAC
ACTTACGTTCGCCCAGCATGTTTCCCCGATTCATCTGTAAAATTTCCTAG
TGGTGAAGAATGTTACGTGACCGGATGGGGAGCTCTTAGGACCGGTGGTT
CATCACCAAGAATCTTGCAACAAGCCAAAATTCCGCTTGTTCCACAACAC
GAATGTCAAAGAGCTATGGGAAGCGATATCACAAAGAACATGTTCTGTGC
TGGATATGCCAACAAAAGAATCGACTCCTGCCAAGGAGATTCCGGGGGTC
CACTTGTCTGTAAAAAGCGAACTTCAACTGGGCAAGATGTTTGGTATTTA
TGGGGAGTCGTTTCATGGGGCATTGATTGTGCGTCACCAGGATATTATGG
TGTCTACTCCAGCATTGAGAATATGGGATCATGGGTCACAAACACCTTGA
AAAGCCgaagaacttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034219XLOC_034219Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054246-proteinTCONS_00054246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054246-exon-scaffold_242-1491911889:1092640..1092744TCONS_00054246-exon-scaffold_242-1491911889:1092640..1092744Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1092640..1092744TCONS_00054246-exon-scaffold_242-1510915933:1092640..1092744Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1092640..1092744TCONS_00054246-exon-scaffold_242-1575043694:1092640..1092744Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1093145..1093291TCONS_00054246-exon-scaffold_242-1491911889:1093145..1093291Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1093145..1093291TCONS_00054246-exon-scaffold_242-1510915933:1093145..1093291Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1093145..1093291TCONS_00054246-exon-scaffold_242-1575043694:1093145..1093291Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1094157..1094270TCONS_00054246-exon-scaffold_242-1491911889:1094157..1094270Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1094157..1094270TCONS_00054246-exon-scaffold_242-1510915933:1094157..1094270Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1094157..1094270TCONS_00054246-exon-scaffold_242-1575043694:1094157..1094270Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1094487..1094611TCONS_00054246-exon-scaffold_242-1491911889:1094487..1094611Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1094487..1094611TCONS_00054246-exon-scaffold_242-1510915933:1094487..1094611Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1094487..1094611TCONS_00054246-exon-scaffold_242-1575043694:1094487..1094611Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1095992..1096124TCONS_00054246-exon-scaffold_242-1491911889:1095992..1096124Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1095992..1096124TCONS_00054246-exon-scaffold_242-1510915933:1095992..1096124Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1095992..1096124TCONS_00054246-exon-scaffold_242-1575043694:1095992..1096124Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1097002..1097252TCONS_00054246-exon-scaffold_242-1491911889:1097002..1097252Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1097002..1097252TCONS_00054246-exon-scaffold_242-1510915933:1097002..1097252Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1097002..1097252TCONS_00054246-exon-scaffold_242-1575043694:1097002..1097252Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1491911889:1097866..1098293TCONS_00054246-exon-scaffold_242-1491911889:1097866..1098293Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1510915933:1097866..1098293TCONS_00054246-exon-scaffold_242-1510915933:1097866..1098293Clytia hemisphaericaexon
TCONS_00054246-exon-scaffold_242-1575043694:1097866..1098293TCONS_00054246-exon-scaffold_242-1575043694:1097866..1098293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1092640..1098293 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0648588	0.0632475	0.146873	0.0718461	0.131199	0	0.0833862	0.0780651	0.273276	0.203098	0.459974	0.215978	19.907	19.2626	0.0736579	0.177854	21.5206	20.9351	246.069	292.954	197.126	201.785	426.302	563.591	500.335	502.066	2.44569	4.46091	0.143976	0.256706
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00054246 vs. Swiss-Prot (Human)
Match: TMPS6 (Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.289e-56
Identity = 99/251 (39.44%), Postives = 146/251 (58.17%), Query Frame = 3 
Query:  417 CGVKSDGHTRIVGGTNARPGDWPWQVQIDLNTDWGRYWCGGTLINDEWIVSAAHCFEDDTRARN--YDIYLGEHDIRSKSGNEQKMEVAEIIMHPGYKYGDVDNDMALIRLKKKASFNTYVRPACFPDSSVKFPSGEECYVTGWGALRTGGSSPRILQQAKIPLVPQHECQRAMGSDITKNMFCAGYANKRIDSCQGDSGGPLVCKKRTSTGQDVWYLWGVVSWGIDCASPGYYGVYSSIENMGSWVTNTL 1163
            CG++    +RIVGG  +  G+WPWQ  + +    GR+ CGG LI D W+++AAHCF++D+ A    + ++LG+    S+   E   +V+ +++HP ++    D D+AL++L      +  VRP C P  S  F  G  C++TGWGALR GG     LQ+  + L+PQ  C       +T  M CAGY   + D+CQGDSGGPLVCK  +      W+L G+VSWG+ C  P Y+GVY+ I  + SW+   +
Sbjct:  568 CGLQGPS-SRIVGGAVSSEGEWPWQASLQVR---GRHICGGALIADRWVITAAHCFQEDSMASTVLWTVFLGKVWQNSRWPGEVSFKVSRLLLHPYHEEDSHDYDVALLQLDHPVVRSAAVRPVCLPARSHFFEPGLHCWITGWGALREGGPISNALQKVDVQLIPQDLCSEVYRYQVTPRMLCAGYRKGKKDACQGDSGGPLVCKALSGR----WFLAGLVSWGLGCGRPNYFGVYTRITGVISWIQQVV 810
The following BLAST results are available for this feature:
BLAST of TCONS_00054246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPS61.289e-5639.44Transmembrane protease serine 6 OS=Homo sapiens GN... [more]
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