TCONS_00055334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055334
Unique NameTCONS_00055334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=transcript|length=1159bp
GAGGTATTCTATTTGACATGATTGGTGGTGAGAGAAATTGAACCAATGAG
TTGGCGCGTTTGATAGGTGCTTGAGGTAAGAGGGTAGTGAATGTTTTCAT
TTGTTTGTCATTGCATTATTTATGATCGCTTGTCTTTAGATTACAGATCA
AAAAGAAACTTCAACAAGTGGAGCAAAGTAGTTTGACTTTTGATAAGAAA
AGAGGCGTTCAGAACATTGGATCTTTTGGTATCGGTGCGTTAGAAAGATA
TGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGAT
TTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACCA
AGcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaattca
aaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTCGCA
GAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGATTT
CCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGATG
ATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGACAA
ATTTCGCACTCAGAGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGT
GGGTGATACCGTAGAATTACCGGAAGATGAAAGTACACCGGAAAAGCGAG
TCAACAAAATTTTCTCATCCGTAGATACTGACCATGATGGATATTTAACG
TTGGAAGAATTCCTCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCATT
GTTGCGctgtaaataaaaaaagaaagagaaaaactcaCGAGCTAAAAATT
GTGAGTTGTGAGTTACAAACTTGGTGAAATCACCCTTCTATCTTGGCTAA
TTACTAAAACAGTTTAGTTATGAGCTCAATTAAAAATGACTCAATCCAAA
TATACTACGACCATTGATTATTTAGAATAGCAGAGAGTCAACAGCTTTCG
TTGGATTTATTTTTCTTGGGGATGTAATCGGTACAATGTTggaataattt
tcttttgatgtatATTTATGAATAAATAATATTATGGTAAAAAATCCTGT
TTATGCCTTTTTCAAGAAATAATGTTAATATCATAATACATTTTAATCCT
AGGATTTCT
Run BLAST on NCBI

protein sequence of TCONS_00055334-protein

>TCONS_00055334-protein ID=TCONS_00055334-protein|Name=TCONS_00055334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYKSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQF
KNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVD
DKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKR
VNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRCK
Run BLAST on NCBI

transcript from alignment at scaffold_253:295276..297921+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=transcript|length=2646bp|location=Sequence derived from alignment at scaffold_253:295276..297921+ (Clytia hemisphaerica)
GAGGTATTCTATTTGACATGATTGGTGGTGAGAGAAATTGAACCAATGAG
TTGGCGCGTTTGATAGGTGCTTGAGGTAAGAGGGTAGTGAATGTTTTCAT
TTGTTTGTCATTGCATTATTTATGATCGCTTGTCTTTAGATTACAGATCA
AAAAGAAACTTCAACAAGTGGAGCAAAGTAGTTTGACTTTTGATAAGAAA
AGAGGCGTTCAGAACATTGGATCTTTTGGTATCGGTGCGTTAGAAAGATA
TGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGAT
TTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACCA
AGGTAAGGGGtagaattttcttcgaaaaccctgtttttactttttctcat
cCTCATAGCTAAAGCAAACAAGATTTCACTTGACTAGCATCATTCTTTAC
CATGTTCGTTCAAAAGACAATTTTAAATCTTCCAAAAAATTCAGCATTTC
CTGTTTGTTTGGCTCATTACTTAAATTTGTCAGATATTGCGTTCCTCAAT
TTTACCTGTTTGACTACAACAGACGGCTTCCTCGTTGGACCTTGGTCAAA
ATTCAGATACACCTAGTTGACCAATAAACCTGAAAGTATGGGAGACAAAA
GccctaagaaaacttgaaaaaagttttaatgTTCCTTTAAGTATTTTGAA
TTCTGTACATCTTCAAAGGTTTCGGCtctgtaatttttgtttaagttAAC
AAAAAATTTCCCCAAAAGATTTGAAATGATATAAGCTTCTTCCTATACAG
AGAAATCAAAGAATGGTTCTAGTCGATTGacgattttttgaatttttttt
atttgaactttttgaatttgaattttctgaaaattttcaacatttgattT
TTCGAATCTAAACTTTTTATCGGGAGTTGACCCCAATTCAAGATAATTAG
GAAATTGTCACGTTTTGTAGTAAAAAAAAATGCATGATCTAAAATTACAA
AACTTCGGTGATTGCGTAACAGATTATTGTAGCGCATGCGTAAATGGAAT
GATGATCGTAAACTTATGCAAACCTGCTGGAAATCAAAGGTCCGTGTGTA
ACAATATTATGAGAAAATTGTTGAGAAATGTTAAGTACCTCAGAAGTAAA
CGCATGTTTAAGTATTTGTGaccaaaacttttgtttttcccTTTTGGAAT
TTTGTTTATGTATTGAAGAGGCAAATATTCCTTGTAATCACTGTTCCTTT
TGGCCACAATATCAACTATCATCATAAAACTCATCGATCACGAGCTATTA
GCATGATATCTAATTATTCAAAAATTACAaccaaattgaaaaagaaatga
caTTTAACTTGTTAGGTCTAAATACTGTAGAAGGTTTTCAGATCCATCAA
CGTCAATGATGAAAGAATAGCTAAATTCACTTCAagattactttattttt
ttcagcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaat
tcaaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTC
GCAGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGA
TTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTG
ATGATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGG
TAAGTGCTTTAATTGCTTGAAAACTATTTTCATGACAGATAGAAAAGAAG
GCCGTACAGTTATTTTTATGGGTGGCTTTGTGGGGCGCATAAGCATCGTG
TATGAAAAAATCAGATTCAGCCCCAGAGATACGAAAGCAAAAAGCAATGT
CATCTGATAGACGGCGTACCCTCTCCAGCCCTGATtgtggaaaaattaaa
aatgtaaaagGCTGAGATTTAGTAGATACCTTTTGTAATATTTCACGATT
GCATGCGTGATCCAGGGTATATTCTTGTTTTTACTCAGTAATCTGTAGAT
TATGGATACAAATTTCTCCATCctttaaaaagaaacaaaattccTCTTGA
AAGTACAAATTCATTCTTTTCATCTTTCTGTAGACAAATTTCGCACTCAG
AGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTA
GAATTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTT
CTCATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCC
TCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCGctgtaaa
taaaaaaagaaagagaaaaactcaCGAGCTAAAAATTGTGAGTTGTGAGT
TACAAACTTGGTGAAATCACCCTTCTATCTTGGCTAATTACTAAAACAGT
TTAGTTATGAGCTCAATTAAAAATGACTCAATCCAAATATACTACGACCA
TTGATTATTTAGAATAGCAGAGAGTCAACAGCTTTCGTTGGATTTATTTT
TCTTGGGGATGTAATCGGTACAATGTTggaataattttcttttgatgtat
ATTTATGAATAAATAATATTATGGTAAAAAATCCTGTTTATGCCTTTTTC
AAGAAATAATGTTAATATCATAATACATTTTAATCCTAGGATTTCT

Coding sequence (CDS) from alignment at scaffold_253:295276..297921+

>TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_253:295276..297921+ (Clytia hemisphaerica)
ATGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGA
TTTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACC
AAGcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaattc
aaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTCGC
AGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGATT
TCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGAT
GATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGACA
AATTTCGCACTCAGAGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGG
TGGGTGATACCGTAGAATTACCGGAAGATGAAAGTACACCGGAAAAGCGA
GTCAACAAAATTTTCTCATCCGTAGATACTGACCATGATGGATATTTAAC
GTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCAT
TGTTGCGctgtaaataaATGGGTAATTATAAATCGAAGTCGAAATTACAT
CGTAAAACAGTGAATGATTTGAGGGACAAAACACAAATGAGTGAAAAAGA
ATTAACAGATTGGCACCAAGcgTTTATTAAAGACTATCCCTCAGGCAAAC
TGAATGTGgagcaattcaaaaacataTACAATAAATTCTTTCCCAATGGA
GACGCTGGAGTTTTCGCAGAACAAATCTTCCAATCGTTTGACAATAATAA
CGACGGATTTGTGGATTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCA
AGAAGGGATCAGTTGATGATAAATTGAGATGGGCTTTCTCCATGTACGAT
TTAGACAAAAATGGACAAATTTCGCACTCAGAGATGTTGGAGGTTGTTAG
TGCAATTTACAAAATGGTGGGTGATACCGTAGAATTACCGGAAGATGAAA
GTACACCGGAAAAGCGAGTCAACAAAATTTTCTCATCCGTAGATACTGAC
CATGATGGATATTTAACGTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGA
TAAAACCATTCGTTCATTGTTGCGctgtaaataaATGGGTAATTATAAAT
CGAAGTCGAAATTACATCGTAAAACAGTGAATGATTTGAGGGACAAAACA
CAAATGAGTGAAAAAGAATTAACAGATTGGCACCAAGcgTTTATTAAAGA
CTATCCCTCAGGCAAACTGAATGTGgagcaattcaaaaacataTACAATA
AATTCTTTCCCAATGGAGACGCTGGAGTTTTCGCAGAACAAATCTTCCAA
TCGTTTGACAATAATAACGACGGATTTGTGGATTTCCGAGAATTCATGAC
AGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGATGATAAATTGAGATGGG
CTTTCTCCATGTACGATTTAGACAAAAATGGACAAATTTCGCACTCAGAG
ATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTAGA
ATTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTTCT
CATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCCTC
GAGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCGctgtaaata
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034861XLOC_034861Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055334-proteinTCONS_00055334-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055334-exon-scaffold_253-1491911889:295276..295627TCONS_00055334-exon-scaffold_253-1491911889:295276..295627Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1510915933:295276..295627TCONS_00055334-exon-scaffold_253-1510915933:295276..295627Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1575043694:295276..295627TCONS_00055334-exon-scaffold_253-1575043694:295276..295627Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1491911889:296731..296974TCONS_00055334-exon-scaffold_253-1491911889:296731..296974Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1510915933:296731..296974TCONS_00055334-exon-scaffold_253-1510915933:296731..296974Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1575043694:296731..296974TCONS_00055334-exon-scaffold_253-1575043694:296731..296974Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1491911889:297359..297921TCONS_00055334-exon-scaffold_253-1491911889:297359..297921Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1510915933:297359..297921TCONS_00055334-exon-scaffold_253-1510915933:297359..297921Clytia hemisphaericaexon
TCONS_00055334-exon-scaffold_253-1575043694:297359..297921TCONS_00055334-exon-scaffold_253-1575043694:297359..297921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:295276..297921 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.094484	0.124105	0	0.0590824	0	0.137155	1.87999	0.684294	0.264848	4.70203	37.7297	28.5939	106.476	119.686	9.76347	16.0561	0.695132	0.389225	8.62178	6.8081	0.418802	0.86801	1.30533	1.72332	0.0867101	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00055334 vs. Swiss-Prot (Human)
Match: HPCA (Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens GN=HPCA PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 1.627e-69
Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:  262 KSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQFKNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVDDKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKRVNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRC 810
            K  SKL  + + DLR+ T+ SE EL +W++ F+KD P+G LNV++FK IY  FFP GDA  FAE +F++FD N+DG +DFREF+  L+V  +G ++ KL WAFSMYDLD NG IS  EMLE+V AIYKMV   +++PEDESTPEKR  KIF  +DT++DG L+LEEF+  A  D +I  LL+C
Sbjct:    3 KQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQC 185
The following BLAST results are available for this feature:
BLAST of TCONS_00055334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPCA1.627e-6955.74Neuron-specific calcium-binding protein hippocalci... [more]
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