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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=transcript|length=1159bp
GAGGTATTCTATTTGACATGATTGGTGGTGAGAGAAATTGAACCAATGAG
TTGGCGCGTTTGATAGGTGCTTGAGGTAAGAGGGTAGTGAATGTTTTCAT
TTGTTTGTCATTGCATTATTTATGATCGCTTGTCTTTAGATTACAGATCA
AAAAGAAACTTCAACAAGTGGAGCAAAGTAGTTTGACTTTTGATAAGAAA
AGAGGCGTTCAGAACATTGGATCTTTTGGTATCGGTGCGTTAGAAAGATA
TGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGAT
TTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACCA
AGcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaattca
aaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTCGCA
GAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGATTT
CCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGATG
ATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGACAA
ATTTCGCACTCAGAGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGT
GGGTGATACCGTAGAATTACCGGAAGATGAAAGTACACCGGAAAAGCGAG
TCAACAAAATTTTCTCATCCGTAGATACTGACCATGATGGATATTTAACG
TTGGAAGAATTCCTCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCATT
GTTGCGctgtaaataaaaaaagaaagagaaaaactcaCGAGCTAAAAATT
GTGAGTTGTGAGTTACAAACTTGGTGAAATCACCCTTCTATCTTGGCTAA
TTACTAAAACAGTTTAGTTATGAGCTCAATTAAAAATGACTCAATCCAAA
TATACTACGACCATTGATTATTTAGAATAGCAGAGAGTCAACAGCTTTCG
TTGGATTTATTTTTCTTGGGGATGTAATCGGTACAATGTTggaataattt
tcttttgatgtatATTTATGAATAAATAATATTATGGTAAAAAATCCTGT
TTATGCCTTTTTCAAGAAATAATGTTAATATCATAATACATTTTAATCCT
AGGATTTCT Run BLAST on NCBI protein sequence of TCONS_00055334-protein >TCONS_00055334-protein ID=TCONS_00055334-protein|Name=TCONS_00055334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYKSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQF
KNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVD
DKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKR
VNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRCK Run BLAST on NCBI transcript from alignment at scaffold_253:295276..297921+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=transcript|length=2646bp|location=Sequence derived from alignment at scaffold_253:295276..297921+ (Clytia hemisphaerica)
GAGGTATTCTATTTGACATGATTGGTGGTGAGAGAAATTGAACCAATGAG
TTGGCGCGTTTGATAGGTGCTTGAGGTAAGAGGGTAGTGAATGTTTTCAT
TTGTTTGTCATTGCATTATTTATGATCGCTTGTCTTTAGATTACAGATCA
AAAAGAAACTTCAACAAGTGGAGCAAAGTAGTTTGACTTTTGATAAGAAA
AGAGGCGTTCAGAACATTGGATCTTTTGGTATCGGTGCGTTAGAAAGATA
TGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGAT
TTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACCA
AGGTAAGGGGtagaattttcttcgaaaaccctgtttttactttttctcat
cCTCATAGCTAAAGCAAACAAGATTTCACTTGACTAGCATCATTCTTTAC
CATGTTCGTTCAAAAGACAATTTTAAATCTTCCAAAAAATTCAGCATTTC
CTGTTTGTTTGGCTCATTACTTAAATTTGTCAGATATTGCGTTCCTCAAT
TTTACCTGTTTGACTACAACAGACGGCTTCCTCGTTGGACCTTGGTCAAA
ATTCAGATACACCTAGTTGACCAATAAACCTGAAAGTATGGGAGACAAAA
GccctaagaaaacttgaaaaaagttttaatgTTCCTTTAAGTATTTTGAA
TTCTGTACATCTTCAAAGGTTTCGGCtctgtaatttttgtttaagttAAC
AAAAAATTTCCCCAAAAGATTTGAAATGATATAAGCTTCTTCCTATACAG
AGAAATCAAAGAATGGTTCTAGTCGATTGacgattttttgaatttttttt
atttgaactttttgaatttgaattttctgaaaattttcaacatttgattT
TTCGAATCTAAACTTTTTATCGGGAGTTGACCCCAATTCAAGATAATTAG
GAAATTGTCACGTTTTGTAGTAAAAAAAAATGCATGATCTAAAATTACAA
AACTTCGGTGATTGCGTAACAGATTATTGTAGCGCATGCGTAAATGGAAT
GATGATCGTAAACTTATGCAAACCTGCTGGAAATCAAAGGTCCGTGTGTA
ACAATATTATGAGAAAATTGTTGAGAAATGTTAAGTACCTCAGAAGTAAA
CGCATGTTTAAGTATTTGTGaccaaaacttttgtttttcccTTTTGGAAT
TTTGTTTATGTATTGAAGAGGCAAATATTCCTTGTAATCACTGTTCCTTT
TGGCCACAATATCAACTATCATCATAAAACTCATCGATCACGAGCTATTA
GCATGATATCTAATTATTCAAAAATTACAaccaaattgaaaaagaaatga
caTTTAACTTGTTAGGTCTAAATACTGTAGAAGGTTTTCAGATCCATCAA
CGTCAATGATGAAAGAATAGCTAAATTCACTTCAagattactttattttt
ttcagcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaat
tcaaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTC
GCAGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGA
TTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTG
ATGATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGG
TAAGTGCTTTAATTGCTTGAAAACTATTTTCATGACAGATAGAAAAGAAG
GCCGTACAGTTATTTTTATGGGTGGCTTTGTGGGGCGCATAAGCATCGTG
TATGAAAAAATCAGATTCAGCCCCAGAGATACGAAAGCAAAAAGCAATGT
CATCTGATAGACGGCGTACCCTCTCCAGCCCTGATtgtggaaaaattaaa
aatgtaaaagGCTGAGATTTAGTAGATACCTTTTGTAATATTTCACGATT
GCATGCGTGATCCAGGGTATATTCTTGTTTTTACTCAGTAATCTGTAGAT
TATGGATACAAATTTCTCCATCctttaaaaagaaacaaaattccTCTTGA
AAGTACAAATTCATTCTTTTCATCTTTCTGTAGACAAATTTCGCACTCAG
AGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTA
GAATTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTT
CTCATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCC
TCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCGctgtaaa
taaaaaaagaaagagaaaaactcaCGAGCTAAAAATTGTGAGTTGTGAGT
TACAAACTTGGTGAAATCACCCTTCTATCTTGGCTAATTACTAAAACAGT
TTAGTTATGAGCTCAATTAAAAATGACTCAATCCAAATATACTACGACCA
TTGATTATTTAGAATAGCAGAGAGTCAACAGCTTTCGTTGGATTTATTTT
TCTTGGGGATGTAATCGGTACAATGTTggaataattttcttttgatgtat
ATTTATGAATAAATAATATTATGGTAAAAAATCCTGTTTATGCCTTTTTC
AAGAAATAATGTTAATATCATAATACATTTTAATCCTAGGATTTCT Coding sequence (CDS) from alignment at scaffold_253:295276..297921+ >TCONS_00055334 ID=TCONS_00055334|Name=TCONS_00055334|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_253:295276..297921+ (Clytia hemisphaerica)
ATGGGTAATTATAAATCGAAGTCGAAATTACATCGTAAAACAGTGAATGA
TTTGAGGGACAAAACACAAATGAGTGAAAAAGAATTAACAGATTGGCACC
AAGcgTTTATTAAAGACTATCCCTCAGGCAAACTGAATGTGgagcaattc
aaaaacataTACAATAAATTCTTTCCCAATGGAGACGCTGGAGTTTTCGC
AGAACAAATCTTCCAATCGTTTGACAATAATAACGACGGATTTGTGGATT
TCCGAGAATTCATGACAGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGAT
GATAAATTGAGATGGGCTTTCTCCATGTACGATTTAGACAAAAATGGACA
AATTTCGCACTCAGAGATGTTGGAGGTTGTTAGTGCAATTTACAAAATGG
TGGGTGATACCGTAGAATTACCGGAAGATGAAAGTACACCGGAAAAGCGA
GTCAACAAAATTTTCTCATCCGTAGATACTGACCATGATGGATATTTAAC
GTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGATAAAACCATTCGTTCAT
TGTTGCGctgtaaataaATGGGTAATTATAAATCGAAGTCGAAATTACAT
CGTAAAACAGTGAATGATTTGAGGGACAAAACACAAATGAGTGAAAAAGA
ATTAACAGATTGGCACCAAGcgTTTATTAAAGACTATCCCTCAGGCAAAC
TGAATGTGgagcaattcaaaaacataTACAATAAATTCTTTCCCAATGGA
GACGCTGGAGTTTTCGCAGAACAAATCTTCCAATCGTTTGACAATAATAA
CGACGGATTTGTGGATTTCCGAGAATTCATGACAGGCCTTGCTGTCTTCA
AGAAGGGATCAGTTGATGATAAATTGAGATGGGCTTTCTCCATGTACGAT
TTAGACAAAAATGGACAAATTTCGCACTCAGAGATGTTGGAGGTTGTTAG
TGCAATTTACAAAATGGTGGGTGATACCGTAGAATTACCGGAAGATGAAA
GTACACCGGAAAAGCGAGTCAACAAAATTTTCTCATCCGTAGATACTGAC
CATGATGGATATTTAACGTTGGAAGAATTCCTCGAGGTGGCCAGTAAAGA
TAAAACCATTCGTTCATTGTTGCGctgtaaataaATGGGTAATTATAAAT
CGAAGTCGAAATTACATCGTAAAACAGTGAATGATTTGAGGGACAAAACA
CAAATGAGTGAAAAAGAATTAACAGATTGGCACCAAGcgTTTATTAAAGA
CTATCCCTCAGGCAAACTGAATGTGgagcaattcaaaaacataTACAATA
AATTCTTTCCCAATGGAGACGCTGGAGTTTTCGCAGAACAAATCTTCCAA
TCGTTTGACAATAATAACGACGGATTTGTGGATTTCCGAGAATTCATGAC
AGGCCTTGCTGTCTTCAAGAAGGGATCAGTTGATGATAAATTGAGATGGG
CTTTCTCCATGTACGATTTAGACAAAAATGGACAAATTTCGCACTCAGAG
ATGTTGGAGGTTGTTAGTGCAATTTACAAAATGGTGGGTGATACCGTAGA
ATTACCGGAAGATGAAAGTACACCGGAAAAGCGAGTCAACAAAATTTTCT
CATCCGTAGATACTGACCATGATGGATATTTAACGTTGGAAGAATTCCTC
GAGGTGGCCAGTAAAGATAAAACCATTCGTTCATTGTTGCGctgtaaata
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055334-exon-scaffold_253-1491911889:295276..295627 | TCONS_00055334-exon-scaffold_253-1491911889:295276..295627 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1510915933:295276..295627 | TCONS_00055334-exon-scaffold_253-1510915933:295276..295627 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1575043694:295276..295627 | TCONS_00055334-exon-scaffold_253-1575043694:295276..295627 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1491911889:296731..296974 | TCONS_00055334-exon-scaffold_253-1491911889:296731..296974 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1510915933:296731..296974 | TCONS_00055334-exon-scaffold_253-1510915933:296731..296974 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1575043694:296731..296974 | TCONS_00055334-exon-scaffold_253-1575043694:296731..296974 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1491911889:297359..297921 | TCONS_00055334-exon-scaffold_253-1491911889:297359..297921 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1510915933:297359..297921 | TCONS_00055334-exon-scaffold_253-1510915933:297359..297921 | Clytia hemisphaerica | exon |
| TCONS_00055334-exon-scaffold_253-1575043694:297359..297921 | TCONS_00055334-exon-scaffold_253-1575043694:297359..297921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:295276..297921 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00055334 vs. Swiss-Prot (Human)
Match: HPCA (Neuron-specific calcium-binding protein hippocalcin OS=Homo sapiens GN=HPCA PE=1 SV=2) HSP 1 Score: 220.705 bits (561), Expect = 1.627e-69 Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 262 KSKSKLHRKTVNDLRDKTQMSEKELTDWHQAFIKDYPSGKLNVEQFKNIYNKFFPNGDAGVFAEQIFQSFDNNNDGFVDFREFMTGLAVFKKGSVDDKLRWAFSMYDLDKNGQISHSEMLEVVSAIYKMVGDTVELPEDESTPEKRVNKIFSSVDTDHDGYLTLEEFLEVASKDKTIRSLLRC 810
K SKL + + DLR+ T+ SE EL +W++ F+KD P+G LNV++FK IY FFP GDA FAE +F++FD N+DG +DFREF+ L+V +G ++ KL WAFSMYDLD NG IS EMLE+V AIYKMV +++PEDESTPEKR KIF +DT++DG L+LEEF+ A D +I LL+C
Sbjct: 3 KQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGDASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQC 185
The following BLAST results are available for this feature:
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