TCONS_00055438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055438
Unique NameTCONS_00055438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055438 ID=TCONS_00055438|Name=TCONS_00055438|organism=Clytia hemisphaerica|type=transcript|length=1642bp
AAACAGACGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGAT
GGAAAACCAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACG
TATAAACATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAA
CATATACCCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTA
TTGGAAATTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTT
GTAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAG
TGAAAACAAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCA
ATATCTTGACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTT
AATGACTGGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAG
TATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAG
GAAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGAT
TATAACCTATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGT
GTTGCCATACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCA
AGGATACAGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTT
GACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTT
ACCAGAAAACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATT
ACCAAAACACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTT
TTGAAGAATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCT
ACAAATATCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATA
AAAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTG
TCTGCTGGTGCTATTGCATCTCCACAGATTTTGATGCTATCAGGTGTAGG
ACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTC
CCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACG
TTCAATGAATCCATCGAAACTTTGCCAGAACATTTTCAGACATTTGAAAC
TTACAAAGAATATCACCAACATCGAACCGGTCTTCTCTCATCTGGCATCG
TTCTCGGTGCATTCATGCCAGCATctgaaaaagcaaagaaaaatgatTGG
CCTGAAATTCAAACACATTTTTATCCACACTTGATAACATCACTCCCTGT
ATATCAACAAATTTTCAACTTCAATGAAGAGTACTGGAGAAATGTTATGC
TGAAGGAATTGGAAGGGAAGAATGGTGTCACTTTTGTCAACTGTCTTCTA
CGGCCAAAGAGCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGA
CCATCCGATCATCAccacaaattattttgagcatcCCGACGATCTTACGA
CCTTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCT
CAATATAATGCTACACTCGTTGATTTGAATGATCCAGCTTGC
Run BLAST on NCBI

protein sequence of TCONS_00055438-protein

>TCONS_00055438-protein ID=TCONS_00055438-protein|Name=TCONS_00055438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
NRRRETVFLHASKKMGWKTKTFIFLLPIIGYFTYKHLTDNFLSHVITISN
IYPNLPIENFAKLNPDIGNFATPDNKILPRYDFVVIGAGSAGAVVARRLS
ENKSWKILLLEAGGGANILTEIPGLLFNNFMSLNDWSYRTEAAKDGKTSS
IHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDV
LPYYLKSEDQRIKNLAKDTGHHSTGGRLTIEDVDRKGIFHKLMEGCKKVL
PENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVL
QISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVG
PKEELEKHGIPLIKDLPVGQNLQDHVNVAHHMTFNESIETLPEHFQTFET
YKEYHQHRTGLLSSGIVLGAFMPASEKAKKNDWPEIQTHFYPHLITSLPV
YQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADD
HPIITTNYFEHPDDLTTFVEAFKFGKKLAAALPQYNATLVDLNDPAC
Run BLAST on NCBI

transcript from alignment at scaffold_253:975020..978409+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055438 ID=TCONS_00055438|Name=TCONS_00055438|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at scaffold_253:975020..978409+ (Clytia hemisphaerica)
AAACAGACGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGAT
GGAAAACCAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACG
TATAAACATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAA
CATATACCCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTA
TTGGAAATTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTT
GTAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAG
TGAAAACAAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCA
ATATCTTGACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTT
AATGACTGGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAG
TATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAG
GAAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGAT
TATAACCTATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGT
GTTGCCATACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCA
AGGATACAGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTT
GACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTT
ACCAGAAAACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATT
ACCAAAACACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTT
TTGAAGAATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCT
ACAAATATCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATA
AAAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTG
TCTGCTGGTGCTATTGCATCTCCACAGGTACGATATTAtgttttcaagca
ttttcaagcaaaaaaaaaggttttagtAGTTTTAATTAGTAAACCATTCT
TTTATTTCCTGGAATGTTTTAGAATAGTTTATAGCCCCTCCCCTGGGAAA
ATTACATTAAGTTCTAGGAGGttccaaaagaaaaaagcaaaagcCTTTCC
TTAAAACCACTggaatttttcttgaaataccCCCTTTGTGAATATATCAT
GGAATTGCCCAATAAATGAATAATAGTCTCGAATTTGAGTCAAACATGGA
CAAACACAAAGAACACCCTGTCTCAAAGGCCCTAAGGAACATTTTCcccc
agtggggatgaaaatttctatcgaaaacCCAAGATGGTTTTGGAGGGCAA
TTTATGCCATTGATTTTCAAATGGGGATACAaataaagtcaatttcccag
tggggctgaaattatgtgttttttttccaaccagGAACAAAAGTTGGGCC
AAATTTTCAAGTGGGGCGGAGGTCCCAGCGgttctgtgacacagggatgt
cAAAGATTtccaacctttaaaaaaaataaaattttattcttttttagtGT
GTAAGGAACAGAAAACATACAAAGACGTGATACAAACTTGAGACTGATTT
ATATTATCCAAAATCTTAACTTTAGATTTTGATGCTATCAGGTGTAGGAC
CCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTCCC
GTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACGTT
CAATGAATCCATCGAAACTTTGCCAGAACAGTAAGTCaataaattatatt
ttattaatgTTAATCGTCCATCCAAGTAAGCAAACGTATTTAATATTCCC
GCTAATATTTCTCgataaaagaaatactactttccTATTTTCCAGTAATG
GAAAGCATCGGTGGAATTCAATTTAGTCCTTTGAAACTTCATCTCTAACA
AGGTTTCTCATCATCATTCTNGGTTTTGGAGGACAATTTATGCCATTGAT
TTTCAAATGGGAAtacaaaatgaaatgaaaatttcccaGTGGGCCTGAAA
TTGTGTGGTTTTTTCCCACCAGGAACAAAAGtttggccaaattttcaagT
GGGGCAGAGGGATGTCAAAGATTTCCaacctttaaaaaaacttattcttt
tttAGTGTGTACAGGAACAGAAAACATACAAAGACGTGATACAAACTTGA
GACTGATTTATATTATCCAAAATCTTGACTTTAGATTTTGATGCTATCAG
GTGTAGGACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAA
GACCTCCCCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACACCA
CATGACGTTCAATGAATCCATCGAAACTTTGCCAGAACAGTAAGTCAATG
TTAATCATCCACCCAAGTAAGCAAACGTATTTAACATTCCCGCTAATATT
TCTCgataaaagaaatactactttcgGTGAATCGGTGGAATTCAATTTAG
TCCTTTGAAACTTCATCTCTAACAAGGTTTTTCATTATCATTCTAAAGAC
AAATTCCATTCACAGTTTTCAGACATTTGAAACTTACAAAGAATATCACC
AACATCGAACCGGTCTTCTCTCATCTGGCATCGTTCTCGGTGCATTCATG
CCAGCATctgaaaaagcaaagaaaaatgatTGGCCTGAAATTCAAACACA
TTTTTATCCACACTTGATAACATCACTCCCTGTATATCAACAAATTTTCA
ACTTCAATGAAGAGTACTGGAGAAATGTTATGCTGAAGGAATTGGAAGGG
AAGAATGGTGTCACTTTTGTCAACTGTCTTCTACGGCCAAAGAGCAGGTT
TGGATGGTTGTTATTTATGAAAAGTTAAAgctttgtttggttgatgtatA
AAAacacagttgacactctctaattcgattttcaagggggggTTGAAAAG
GGAGCGTATCAAACACTAACGCGTTGTTTATGAGTGTTTCTTGCTGACGG
TGACTtttaatattatcgaataatgaagCGTATCGAAAATTAGAATTTCG
GATTAGAGAGTTGAAAAACAGGTTGTTAGGGTAAGTGCCCCATATTGCCT
GGACTAAAAGGATTCCAAATAACTGATTGAAAGGTCTCAACCGTTGACTA
TCTATCTTTCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGACC
ATCCGATCATCAccacaaattattttgagcatcCCGACGATCTTACGACC
TTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTCA
ATATAATGCTACACTCGTTGATTTGAATGATCCAGCTTGC

Coding sequence (CDS) from alignment at scaffold_253:975020..978409+

>TCONS_00055438 ID=TCONS_00055438|Name=TCONS_00055438|organism=Clytia hemisphaerica|type=CDS|length=8205bp|location=Sequence derived from alignment at scaffold_253:975020..978409+ (Clytia hemisphaerica)
AACAGACGTAGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGATG
GAAAACCAAAACATTCATTTTTCTGTTACCCATCATCGGATATTTTACGT
ATAAACATCTCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAAC
ATATACCCAAATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTAT
TGGAAATTTCGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTTG
TAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAGT
GAAAACAAATCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCAA
TATCTTGACCGAGATTCCGGGtcttctcttcaacaatttcatgTCACTTA
ATGACTGGTCATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAGT
ATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAGG
AAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGATT
ATAACCTATGGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGTG
TTGCCATACTACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCAA
GGATACAGGACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTTG
ACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTTA
CCAGAAAACCATGACTACAACGGTGGCACACAGACTGGATGTGTTTATTA
CCAAAACACAAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTTT
TGAAGAATCCGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCTA
CAAATATCAATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATAA
AAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTGT
CTGCTGGTGCTATTGCATCTCCACAGATTTTGATGCTATCAGGTGTAGGA
CCCAAAGAGGAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTCC
CGTTGGACAAAACTTGCAAGACCATGTGAACGTTGCACATCACATGACGT
TCAATGAATCCATCGAAACTTTGCCAGAACATTTTCAGACATTTGAAACT
TACAAAGAATATCACCAACATCGAACCGGTCTTCTCTCATCTGGCATCGT
TCTCGGTGCATTCATGCCAGCATctgaaaaagcaaagaaaaatgatTGGC
CTGAAATTCAAACACATTTTTATCCACACTTGATAACATCACTCCCTGTA
TATCAACAAATTTTCAACTTCAATGAAGAGTACTGGAGAAATGTTATGCT
GAAGGAATTGGAAGGGAAGAATGGTGTCACTTTTGTCAACTGTCTTCTAC
GGCCAAAGAGCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGAC
CATCCGATCATCAccacaaattattttgagcatcCCGACGATCTTACGAC
CTTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTC
AATATAATGCTACACTCGTTGATTTGAATGATCCAGCTTGCAACAGACGT
AGAGAGACTGTATTTTTACATGCGAGCAAAAAGATGGGATGGAAAACCAA
AACATTCATTTTTCTGTTACCCATCATCGGATATTTTACGTATAAACATC
TCACTGATAATTTCTTATCGCATGTTATAACGATCAGTAACATATACCCA
AATCTTCCaatcgaaaatttcgcaaaattaaatcctgaTATTGGAAATTT
CGCAACGCCAGATAATAAGATCTTGCCAAGATATGACTTTGTAGTGATCG
GTGCTGGATCGGCTGGAGCTGTCGTTGCCAGGCGTTTGAGTGAAAACAAA
TCATGGAAGATTCTCTTACTAGAGGCTGGTGGTGGCGCCAATATCTTGAC
CGAGATTCCGGGtcttctcttcaacaatttcatgTCACTTAATGACTGGT
CATATAGAACTGAAGCAGCCAAAGATGGAAAAACATCAAGTATACATACT
AAAGGTCAAGTGATTTGGCCCAGAGGTAAAATACTTGGAGGAAGCAGCTC
AATAAACGGGTTAGTCTATGCTAGAGGTAATAAGCTAGATTATAACCTAT
GGTCTGATCAAGGGAACCCAGGATGGAGCTATAAAGATGTGTTGCCATAC
TACTTAAAATCTGAAGACCAACGAATCAAAAACCTAGCCAAGGATACAGG
ACATCATTCTACAGGTGGTCGTCTGACAATCGAGGATGTTGACCGAAAAG
GAATTTTTCACAAACTTATGGAAGGTTGTAAGAAGGTGTTACCAGAAAAC
CATGACTACAACGGTGGCACACAGACTGGATGTGTTTATTACCAAAACAC
AAAGACAAATGGACAACGATGTAGCACGGCTAACGCGTTTTTGAAGAATC
CGCCATCAAATTTACACATAAGCCCCCTGTCACACGTTCTACAAATATCA
ATTCATGAAGATACACATCAAGCTACAGGTGTGGTGTATAAAAAGAATGG
TAAAGTGGTAATAGTCAATGCTAGGAAAGAAGTCATCCTGTCTGCTGGTG
CTATTGCATCTCCACAGATTTTGATGCTATCAGGTGTAGGACCCAAAGAG
GAGCTTGAAAAACATGGTATACCACTCATCAAAGACCTTCCCGTTGGACA
AAACTTGCAAGACCATGTGAACGTTGCACATCACATGACGTTCAATGAAT
CCATCGAAACTTTGCCAGAACATTTTCAGACATTTGAAACTTACAAAGAA
TATCACCAACATCGAACCGGTCTTCTCTCATCTGGCATCGTTCTCGGTGC
ATTCATGCCAGCATctgaaaaagcaaagaaaaatgatTGGCCTGAAATTC
AAACACATTTTTATCCACACTTGATAACATCACTCCCTGTATATCAACAA
ATTTTCAACTTCAATGAAGAGTACTGGAGAAATGTTATGCTGAAGGAATT
GGAAGGGAAGAATGGTGTCACTTTTGTCAACTGTCTTCTACGGCCAAAGA
GCAGAGGGCACATAAAATTGAGAAGTGCGAAGGCTGACGACCATCCGATC
ATCAccacaaattattttgagcatcCCGACGATCTTACGACCTTCGTTGA
GGCTTTCAAGTTCGGGAAGAAACTGGCAGCGGCACTGCCTCAATATAATG
CTACACTCGTTGATTTGAATGATCCAGCTTGCAACAGACGTAGAGAGACT
GTATTTTTACATGCGAGCAAAAAGATGGGATGGAAAACCAAAACATTCAT
TTTTCTGTTACCCATCATCGGATATTTTACGTATAAACATCTCACTGATA
ATTTCTTATCGCATGTTATAACGATCAGTAACATATACCCAAATCTTCCa
atcgaaaatttcgcaaaattaaatcctgaTATTGGAAATTTCGCAACGCC
AGATAATAAGATCTTGCCAAGATATGACTTTGTAGTGATCGGTGCTGGAT
CGGCTGGAGCTGTCGTTGCCAGGCGTTTGAGTGAAAACAAATCATGGAAG
ATTCTCTTACTAGAGGCTGGTGGTGGCGCCAATATCTTGACCGAGATTCC
GGGtcttctcttcaacaatttcatgTCACTTAATGACTGGTCATATAGAA
CTGAAGCAGCCAAAGATGGAAAAACATCAAGTATACATACTAAAGGTCAA
GTGATTTGGCCCAGAGGTAAAATACTTGGAGGAAGCAGCTCAATAAACGG
GTTAGTCTATGCTAGAGGTAATAAGCTAGATTATAACCTATGGTCTGATC
AAGGGAACCCAGGATGGAGCTATAAAGATGTGTTGCCATACTACTTAAAA
TCTGAAGACCAACGAATCAAAAACCTAGCCAAGGATACAGGACATCATTC
TACAGGTGGTCGTCTGACAATCGAGGATGTTGACCGAAAAGGAATTTTTC
ACAAACTTATGGAAGGTTGTAAGAAGGTGTTACCAGAAAACCATGACTAC
AACGGTGGCACACAGACTGGATGTGTTTATTACCAAAACACAAAGACAAA
TGGACAACGATGTAGCACGGCTAACGCGTTTTTGAAGAATCCGCCATCAA
ATTTACACATAAGCCCCCTGTCACACGTTCTACAAATATCAATTCATGAA
GATACACATCAAGCTACAGGTGTGGTGTATAAAAAGAATGGTAAAGTGGT
AATAGTCAATGCTAGGAAAGAAGTCATCCTGTCTGCTGGTGCTATTGCAT
CTCCACAGATTTTGATGCTATCAGGTGTAGGACCCAAAGAGGAGCTTGAA
AAACATGGTATACCACTCATCAAAGACCTTCCCGTTGGACAAAACTTGCA
AGACCATGTGAACGTTGCACATCACATGACGTTCAATGAATCCATCGAAA
CTTTGCCAGAACATTTTCAGACATTTGAAACTTACAAAGAATATCACCAA
CATCGAACCGGTCTTCTCTCATCTGGCATCGTTCTCGGTGCATTCATGCC
AGCATctgaaaaagcaaagaaaaatgatTGGCCTGAAATTCAAACACATT
TTTATCCACACTTGATAACATCACTCCCTGTATATCAACAAATTTTCAAC
TTCAATGAAGAGTACTGGAGAAATGTTATGCTGAAGGAATTGGAAGGGAA
GAATGGTGTCACTTTTGTCAACTGTCTTCTACGGCCAAAGAGCAGAGGGC
ACATAAAATTGAGAAGTGCGAAGGCTGACGACCATCCGATCATCAccaca
aattattttgagcatcCCGACGATCTTACGACCTTCGTTGAGGCTTTCAA
GTTCGGGAAGAAACTGGCAGCGGCACTGCCTCAATATAATGCTACACTCG
TTGATTTGAATGATCCAGCTTGCAACAGACGTAGAGAGACTGTATTTTTA
CATGCGAGCAAAAAGATGGGATGGAAAACCAAAACATTCATTTTTCTGTT
ACCCATCATCGGATATTTTACGTATAAACATCTCACTGATAATTTCTTAT
CGCATGTTATAACGATCAGTAACATATACCCAAATCTTCCaatcgaaaat
ttcgcaaaattaaatcctgaTATTGGAAATTTCGCAACGCCAGATAATAA
GATCTTGCCAAGATATGACTTTGTAGTGATCGGTGCTGGATCGGCTGGAG
CTGTCGTTGCCAGGCGTTTGAGTGAAAACAAATCATGGAAGATTCTCTTA
CTAGAGGCTGGTGGTGGCGCCAATATCTTGACCGAGATTCCGGGtcttct
cttcaacaatttcatgTCACTTAATGACTGGTCATATAGAACTGAAGCAG
CCAAAGATGGAAAAACATCAAGTATACATACTAAAGGTCAAGTGATTTGG
CCCAGAGGTAAAATACTTGGAGGAAGCAGCTCAATAAACGGGTTAGTCTA
TGCTAGAGGTAATAAGCTAGATTATAACCTATGGTCTGATCAAGGGAACC
CAGGATGGAGCTATAAAGATGTGTTGCCATACTACTTAAAATCTGAAGAC
CAACGAATCAAAAACCTAGCCAAGGATACAGGACATCATTCTACAGGTGG
TCGTCTGACAATCGAGGATGTTGACCGAAAAGGAATTTTTCACAAACTTA
TGGAAGGTTGTAAGAAGGTGTTACCAGAAAACCATGACTACAACGGTGGC
ACACAGACTGGATGTGTTTATTACCAAAACACAAAGACAAATGGACAACG
ATGTAGCACGGCTAACGCGTTTTTGAAGAATCCGCCATCAAATTTACACA
TAAGCCCCCTGTCACACGTTCTACAAATATCAATTCATGAAGATACACAT
CAAGCTACAGGTGTGGTGTATAAAAAGAATGGTAAAGTGGTAATAGTCAA
TGCTAGGAAAGAAGTCATCCTGTCTGCTGGTGCTATTGCATCTCCACAGA
TTTTGATGCTATCAGGTGTAGGACCCAAAGAGGAGCTTGAAAAACATGGT
ATACCACTCATCAAAGACCTTCCCGTTGGACAAAACTTGCAAGACCATGT
GAACGTTGCACATCACATGACGTTCAATGAATCCATCGAAACTTTGCCAG
AACATTTTCAGACATTTGAAACTTACAAAGAATATCACCAACATCGAACC
GGTCTTCTCTCATCTGGCATCGTTCTCGGTGCATTCATGCCAGCATctga
aaaagcaaagaaaaatgatTGGCCTGAAATTCAAACACATTTTTATCCAC
ACTTGATAACATCACTCCCTGTATATCAACAAATTTTCAACTTCAATGAA
GAGTACTGGAGAAATGTTATGCTGAAGGAATTGGAAGGGAAGAATGGTGT
CACTTTTGTCAACTGTCTTCTACGGCCAAAGAGCAGAGGGCACATAAAAT
TGAGAAGTGCGAAGGCTGACGACCATCCGATCATCAccacaaattatttt
gagcatcCCGACGATCTTACGACCTTCGTTGAGGCTTTCAAGTTCGGGAA
GAAACTGGCAGCGGCACTGCCTCAATATAATGCTACACTCGTTGATTTGA
ATGATCCAGCTTGCAACAGACGTAGAGAGACTGTATTTTTACATGCGAGC
AAAAAGATGGGATGGAAAACCAAAACATTCATTTTTCTGTTACCCATCAT
CGGATATTTTACGTATAAACATCTCACTGATAATTTCTTATCGCATGTTA
TAACGATCAGTAACATATACCCAAATCTTCCaatcgaaaatttcgcaaaa
ttaaatcctgaTATTGGAAATTTCGCAACGCCAGATAATAAGATCTTGCC
AAGATATGACTTTGTAGTGATCGGTGCTGGATCGGCTGGAGCTGTCGTTG
CCAGGCGTTTGAGTGAAAACAAATCATGGAAGATTCTCTTACTAGAGGCT
GGTGGTGGCGCCAATATCTTGACCGAGATTCCGGGtcttctcttcaacaa
tttcatgTCACTTAATGACTGGTCATATAGAACTGAAGCAGCCAAAGATG
GAAAAACATCAAGTATACATACTAAAGGTCAAGTGATTTGGCCCAGAGGT
AAAATACTTGGAGGAAGCAGCTCAATAAACGGGTTAGTCTATGCTAGAGG
TAATAAGCTAGATTATAACCTATGGTCTGATCAAGGGAACCCAGGATGGA
GCTATAAAGATGTGTTGCCATACTACTTAAAATCTGAAGACCAACGAATC
AAAAACCTAGCCAAGGATACAGGACATCATTCTACAGGTGGTCGTCTGAC
AATCGAGGATGTTGACCGAAAAGGAATTTTTCACAAACTTATGGAAGGTT
GTAAGAAGGTGTTACCAGAAAACCATGACTACAACGGTGGCACACAGACT
GGATGTGTTTATTACCAAAACACAAAGACAAATGGACAACGATGTAGCAC
GGCTAACGCGTTTTTGAAGAATCCGCCATCAAATTTACACATAAGCCCCC
TGTCACACGTTCTACAAATATCAATTCATGAAGATACACATCAAGCTACA
GGTGTGGTGTATAAAAAGAATGGTAAAGTGGTAATAGTCAATGCTAGGAA
AGAAGTCATCCTGTCTGCTGGTGCTATTGCATCTCCACAGATTTTGATGC
TATCAGGTGTAGGACCCAAAGAGGAGCTTGAAAAACATGGTATACCACTC
ATCAAAGACCTTCCCGTTGGACAAAACTTGCAAGACCATGTGAACGTTGC
ACATCACATGACGTTCAATGAATCCATCGAAACTTTGCCAGAACATTTTC
AGACATTTGAAACTTACAAAGAATATCACCAACATCGAACCGGTCTTCTC
TCATCTGGCATCGTTCTCGGTGCATTCATGCCAGCATctgaaaaagcaaa
gaaaaatgatTGGCCTGAAATTCAAACACATTTTTATCCACACTTGATAA
CATCACTCCCTGTATATCAACAAATTTTCAACTTCAATGAAGAGTACTGG
AGAAATGTTATGCTGAAGGAATTGGAAGGGAAGAATGGTGTCACTTTTGT
CAACTGTCTTCTACGGCCAAAGAGCAGAGGGCACATAAAATTGAGAAGTG
CGAAGGCTGACGACCATCCGATCATCAccacaaattattttgagcatcCC
GACGATCTTACGACCTTCGTTGAGGCTTTCAAGTTCGGGAAGAAACTGGC
AGCGGCACTGCCTCAATATAATGCTACACTCGTTGATTTGAATGATCCAG
CTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034886XLOC_034886Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055438-proteinTCONS_00055438-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055438-exon-scaffold_253-1491911889:975020..976046TCONS_00055438-exon-scaffold_253-1491911889:975020..976046Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1510915933:975020..976046TCONS_00055438-exon-scaffold_253-1510915933:975020..976046Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1575043694:975020..976046TCONS_00055438-exon-scaffold_253-1575043694:975020..976046Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1491911889:976695..976811TCONS_00055438-exon-scaffold_253-1491911889:976695..976811Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1510915933:976695..976811TCONS_00055438-exon-scaffold_253-1510915933:976695..976811Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1575043694:976695..976811TCONS_00055438-exon-scaffold_253-1575043694:976695..976811Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1491911889:977421..977458TCONS_00055438-exon-scaffold_253-1491911889:977421..977458Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1510915933:977421..977458TCONS_00055438-exon-scaffold_253-1510915933:977421..977458Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1575043694:977421..977458TCONS_00055438-exon-scaffold_253-1575043694:977421..977458Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1491911889:977635..977916TCONS_00055438-exon-scaffold_253-1491911889:977635..977916Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1510915933:977635..977916TCONS_00055438-exon-scaffold_253-1510915933:977635..977916Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1575043694:977635..977916TCONS_00055438-exon-scaffold_253-1575043694:977635..977916Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1491911889:978232..978409TCONS_00055438-exon-scaffold_253-1491911889:978232..978409Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1510915933:978232..978409TCONS_00055438-exon-scaffold_253-1510915933:978232..978409Clytia hemisphaericaexon
TCONS_00055438-exon-scaffold_253-1575043694:978232..978409TCONS_00055438-exon-scaffold_253-1575043694:978232..978409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:975020..978409 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0371365	9.81329e-05	0.000101874	0	0	0	0.000479962	0.104296	5.67855e-05	0.000648225	0.0570753	0.000480726	1.4541	1.55538	6.61439	9.33108	1.69128	2.02877	0.697426	1.33568	0.000107794	0.00020539	0.0709666	2.05355e-05	0.000311115	0.130477	0.916587	0.235494	0.000169978	0.000287455
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007867GMC_OxRtase_C
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
[Close]
BLAST of TCONS_00055438 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.085e-47
Identity = 141/448 (31.47%), Postives = 204/448 (45.54%), Query Frame = 2 
Query:  293 RLSENKSWKILLLEAG-----GGANILT---EIPGLLFNNFMSLN-DWSYRTEAAK--DGKTSSIHTKGQVIWPRGKILGGSSSINGLVYARGNKLDYNLWSDQGNPGWSYKDVLPYYLKSEDQRIKNLAKDTGHHSTGGRLTIED----VDRKGIFHKL----MEGCKKV-LPENHDYNGGTQTGCVYYQNTKTNGQRCSTANAFLKNPPSNLHISPLSHVLQISIHEDTHQATGVVYKKNGKVVIVNARKEVILSAGAIASPQILMLSGVGPKEELEKHGIPLIKDLP-VGQNLQDHVN--VAHHMTFNESIETLPEHFQTFETYKEYHQHRTGLLSSG-IVLGAFMPASEKAKKNDWPEIQTHFYPHLITS---LPVYQQIFNFNEEYWRNVMLKELEGKNGVTFVNCLLRPKSRGHIKLRSAKADDHPIITTNYFEHPDDLTTF 1555
            RL+E+ + ++LLLEAG      G+  L+    +P  L  N      +W Y TE  +  DG+         + WPRG++ GGSSS+N +VY RG+  DY  W  QG  GW Y   LPY+ K++           GH     R    D    V R    H L    +E  ++   P   D NG  Q G  +   T   G+R S A A+L    S  ++   +  L   +  +  +A GV Y KNG+     A KEVILS GAI SPQ+LMLSG+G  ++L+K GIP++  LP VGQNLQDH+   +    T   ++ +  +  +      E+    TG  ++  +  G F+ +         P+IQ HF P  +     +P  Q+ +  +                        +R  S G +KLRSA   DHP+I  NY     D+  F
Sbjct:   58 RLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ-----------GHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPH---PDIQFHFLPSQVIDHGRVPTQQEAYQVHVGP---------------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDF 462
The following BLAST results are available for this feature:
BLAST of TCONS_00055438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH6.085e-4731.47Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
back to top