TCONS_00057852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057852
Unique NameTCONS_00057852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057852 ID=TCONS_00057852|Name=TCONS_00057852|organism=Clytia hemisphaerica|type=transcript|length=1409bp
aaaaaataagaaacaacTATTCGAATATTGGTTACAGTTGCCATGGGAAC
GCAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAGT
GAAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACCAA
AACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATATA
GTCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCGA
ATGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACCC
AAAGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCACACAAAGA
AGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAAGTACACG
GATTTTTACATTGTGATCGACTTTGAAGCCAcgtgtgaaaaagaaaatcc
cAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTGTACTCGTAGATG
CAGATACTCTGGAAGTGGTATCAGAATTTCACAGTTATTGTCGACCGCTA
ACCAATccgattttgtcaaaattttgcaGAGATTTGACTGGTATAACGCA
GTTGACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATCGTTTTG
ATAAATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTTATCGTC
ACTGATGGACCTTGGGATATCGATCGTTTCCTAAAGACGCAATGCAAAAT
GTCAAAGATGGAGATACCGCACTACTTTCAGCGCTGGGTAAATGTTCGTA
AGCATTTCAATAACTTTTATAAAATACATCAAGTGAACGTCGAACAAATG
TTACAATGCTTAGGAACGGAATTCGTCGGTCGACAGCATAGTGGTATAGA
CGATTCACGAAATATAGCTCGTATTATGATCGAATTGATAAAAGATGGTT
GTCAGGTCATTATTAACGAAACGTTCAGGTAGCTTCGATGGCTTCTAGGT
TGGAATCTGTTCAGTTTAGGTCTATGGCCGAAGATGTCCATATGGAATTT
GGGaggattttgaatttatttatgatGTTTTTGGAATGTTCCATTCATAT
TCACAAGGTTCCGCGGAAAGCCTTGACATTTATTTTGAAGTTGAACATTA
ATTGGCGGAGAAAAAATCAACAGATAGAGGGGTTCCACGAacatgttttt
gatgaaaagtcaaattttaagcatcaaattttaagcatcaaattattttt
ttagtgaataaaagtttttcctcaaaattgaaagaatatGCACTGTACTC
TAAAGAATTACTAATGCTTGTTGATCAATTGCCACTTCGAAACTGTTTTT
CCCAGAATTGTCGACAAGATTTTGCGGCCACAAAACAGCATGTTGAAGTT
AACCTCCCT
Run BLAST on NCBI

protein sequence of TCONS_00057852-protein

>TCONS_00057852-protein ID=TCONS_00057852-protein|Name=TCONS_00057852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
KNKKQLFEYWLQLPWERSILTNENLLKLHKTMSENEDKKITTKNSSPTTK
TTPPPKQLNNPKGPPYSHPVYKKIAAANGRINRMSKSQVVDALEYLKLNP
KGSLEVLQKRLKSHTKKQHFLENDFTEEEKKYTDFYIVIDFEATCEKENP
KGYQHEIIEFPAVLVDADTLEVVSEFHSYCRPLTNPILSKFCRDLTGITQ
LTVESSSTFETVLNRFDKWLKDQVTPDQKFVIVTDGPWDIDRFLKTQCKM
SKMEIPHYFQRWVNVRKHFNNFYKIHQVNVEQMLQCLGTEFVGRQHSGID
DSRNIARIMIELIKDGCQVIINETFR
Run BLAST on NCBI

transcript from alignment at scaffold_3:104305..109985-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057852 ID=TCONS_00057852|Name=TCONS_00057852|organism=Clytia hemisphaerica|type=transcript|length=5681bp|location=Sequence derived from alignment at scaffold_3:104305..109985- (Clytia hemisphaerica)
AAAAAATAAGAAACAACTATTCGAATATTGGTTACAGTTGCCATGGGAAC
GCAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAGT
GAAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACCAA
AACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATATA
GTCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCGA
ATGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACCC
AAAGTAAGATTAAATCATTTTTAATTGTGAATACGTCCGAAGTGAAATTT
CACTTGTTTTTCATGCGTGAAAAGTAAGTAGAAATGTATTAAGTGGAACT
AATAGCTGAAGTGGCTCACTGTCTTGTGGCCCTTAGTGGAAACAATTCCT
CAGTTGTCTAAAAACTGTTGAATTTTTCGAAGCATGTCACGTAAAATATG
TGTAATGTTATTATTATATATAATTATTTTTACTGTACTTATGTACCTTT
CTCTGAATAGTGGAAGGGGATATAGTCTAGGTGCTCGGGTACTCGTAATG
CGGCAACGCGTAGGGGGAGATTCGTTCGCTAGGTAAGCGTGTCTACTATT
TTACCCATAGGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCAC
ACAAAGAAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAA
GTACACGGATTTTTACATTGTGATCGACTTTGAAGCCACGTGTGAAAAAG
AAAATCCCAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTGTACTC
GTAGATGCAGATACTCTGGAAGTGGTAAAACTTTAAATAATTACTTTTTT
TGGTATTTTCATATATTCTTTGTAGGGGCTAAGTTACATCCGCGTATAGT
CATTTGATCTTTACACCTTTGATAGTCAGAAAATGTGTGTGCTGTGGTAT
AAATTAGGTCTAATGTTCTATAATGATGGCGATCATTTTTTGGTTTGATT
CCAAATTTTTCTTTCGTCATATAAATATAGGTTCCCAGGTTCTGCTTTAA
GTAAGAAAAGATTTTCCGACCATGCTTGTTATAAACTAGCCTATTCGACA
TCCATCCCAATTTGCGACCTTTCGGGCTCCAAACATCCAAATGAATTTGC
GTCAAAACAAAAGGTTCCTTTATTTTCGAAAATCATCAAAGTGTAACTCG
TCAAGAAACAACATAATTTTTTCCGTTATTTGTTTTTTGATAAGACAGCC
GCTTATTAACCTAACAGATTGATCAGAGCCAATTACACTGTATGTAATGT
TAATTATTGTTAAGTCTTGGTTGAAGAATGGGCCATTCCATTTTATATCC
AAGCAGGGGGGGTGGACGAACGTTTCCAGGGGATATAAAAAGTATGTTTT
CATTTTTCCAGGGGATAAAAGGTTACTTCAACATTTCCAGGGGGCAAAAG
ACTGATTTTAGTTCGTCCACACTCACTTTTAAGATATGAAAACAATTTTT
CCAAGGGTTCTTTTTCAAATTTTGACATTCTCCAGGGGGTATTCACATAT
TTCTTAAAATCTTTCTTTGCCTTGTAAAGGTTCGTCTACCGGGGGTATGG
AAATTTTATGAAACAGCCTAATATTTGACGTTCATGATCTCATCTTATCG
TTTTAGGTATCAGAATTTCACAGTTATTGTCGACCGCTAACCAATCCGAT
TTTGTCAAAATTTTGCAGAGATTTGACTGGTATAACGCAGGTAGCATATG
AAAGAATTGATTTATCATGGCTTGGCAGCAGGTTTTAGGTGCCCCCTAAG
AATTGAGCTGACCCCTAAGATTTAGGTAACCCCTGGTTGCCAAATATTTT
AAGTGACCCCTAAGCCAAACACACGTCAAATTTTTTCGAAAATCCTTTTC
AAACAATCAAACAAATACAACAGTAAGTTTAGCTTATTGCTAAAAAGAAT
AAATGCCCTAAGAAATAGGAGATAAGCTAAGTAAATGCAAAAGGATTAAA
GAATTTTTACAGATGATATATTAGATACCAAATCTTCAGTCTTTTCAATC
TAGCCCCCAGGTCCATCTGAAAATATTTAGATGACCCCTAACATGGTTGG
TCCCCCCTAGCCACAGGCTAAAATCAGGTACCAATTGCTTGCCAGCCATA
TTTATTTATGAATGTTTTTCTCGAAACTGCTATTGGACATCCAAAGAACT
AAAGATATTTTGAAGCTTGTTGTTATCAATCCTACTGTTGCCGTTATTCT
TTATTTCAGATAAGGCGAGACCAATTTGATTAGTTGGTTTACGTGCCCGA
CCTACCCTAAAATTACAAAAATAAAAATAAAAATAAAATTGATTTTGATA
GTACATTTTTTTTAATTGCCTTACAGTCTGCAAAATTTTCAAAATGTGGG
TAATTTTTACGAAGCTTTTATGAATTTTATGTTCAATTTTCATTGTATCT
GTGAATTCGAGCATTTTGTGTCCTTTTATTTTCTGTTTCACATTTTTGTC
ATGATGTAGTAGTTTTTGCTGTGACGAATGCGGTTTTTTAGGAGATTTTA
TAGGTGAAATGCTAGTTTCATTTTTATTTTTTTCGCCGACCGACCCACCC
TCTTTTTTTGGGTAGCTTGGTCCGTAAAACAATAAATTAAATTGGCCTCG
AGTCTAGAGCACAGATATCTAAGCCCGAAGGGCTAGATTTGCAACTTTAA
GCTTTCTCCAGCAAAAAAAAGTGAAGCAAAAATTTGACTTTTTATTTCGT
GCCGATGGATAGGATCTAGCATTTTAATTGTTTTCGGAGCGCGAGATCAA
AAAACGTAGGCGGCAAACGCTATTTCACATCTCTCAAACCGGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTAGTCACGTGACTCTGGT
AGGAAATCCTTCCAAAGATGAGCTTCACTTTTTGATAAAAGCCGCAAATC
TAGCCCTTCGGGCTTTACAGATATCTGTGGTCTAGAGGCCATTTCAACGT
TTTTTTTATAAGCATGGGTAAAGATATGCTTATATGCCATGCTTATGCAA
TGAGGCAAATGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGCTTTC
AATCACAGCCACTTTTTAGCCCACAGCGTTGACATTCTTGTGGCTGCTGT
GTAGTACAAAATTCCATAAAATAAGGAAATTGATGAGCTTTCCAAAAATG
TGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGCAAA
GTGAGGGCAAGTTTTGTGGCTGTATGTCACTGTGGCTCACTCAACGGGTT
GGCTTATATGTGCTGTCCTGCTTTAAGACTTCAATATTTTTTAACCGTTT
TTCTTTAAATTGATAGTTTAAGGTCTTAGATACTAATGGGTTTAATTTGT
GGCTGCAGGGTTTTCAATGGACTTGAAATGTGGCTTCAATCAAAGCATAT
ATGAAAAAATCGTCAACTTTGAGCCGCAATTCTAGCCCAATGACCCAATA
ATTTTGGTTCCATTTTTTATATTTTATGGATAAACCCTTTTGCTACGAGT
TTCATCTGAAAAAAATGATTTTTACTCATTGAACAAATTTTTGGCTGCTG
TTTTATCAACATAGTGTTTTTCTTGATTTGTGCCGCAATTTTGGCCCATT
TTACAAAAAGAAATTTTCAACCTATCACCTTTAGAACCAATATTGTGAAG
TTTCATTTGAAAAGAGTTAATTTTAAAAAGGATATTCAAATTTCTTTTTT
TTGGCTGTTTTTGAAAACCTCACACAATTTTTGAATGCCATCAAATATTT
TTTGGCTTTAGCCTCGATTTACACATTCAGCTGGATTTCGTAAACTAAGG
CTCAGCATATGTTTTGTCAATGCTTAAGATTTTTTCAAGATTTGAGATTA
GATGTGCTTATACTGTAAGTGTTATGCTTCTAAAAAAAAAAACGTGTAAA
GGCCGTGGCTGAATGCATCATCGTAATTCGTTGTTTTCTTCTTCACAGTT
GACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATCGTTTTGATA
AATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTTATCGTCACT
GATGGGTAGGTTCCAAAAAATCCTTCATAAATAGCTACCGAAAGAAAGGA
ATGATGCAAAGGATTATTCAACTGTTTTTGTTGTTGTTTTTACCGTCGTC
ATTTTTGGCATCATTCGTTTTGTTGAGAAGAAAAATAAAGTTTGTGGTTT
TTTGAAACGTTTTCATTTAAAGACGGATCATTTTTGTCAGAAAGTTTTTT
TTGGTATGTTAGTAGGGGGAAATTTGTTTGTTTTTTTTAGGTTGCTCGAT
TTTTTTCGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGG
GGATCAAAATAACTTAGGTGCCAATTTTTTTTCTGACACTTTGGTGTGAT
TTTCGGACAAATATGACGGTCTCAGGCAAAAATTATAGAGTCAAAAATTA
ATGAAAAATTTTAGCTTGAGAAAATAGAGACTTGTTGTATATTTTTGAAA
AGCTCTCGAAAAATTAAGATTAGAGATATATTGCAAGTATAGGTGATTTC
TGTATTTAACTCGAGATATTAACCCTTAAAACAGTGTTTTTCAGCCAGAA
ACAGCTTTTGTGTCCAGTTTTTGCGCTTTAAGAAGCTCAATATCTCAATA
AAGCGGTTGAATGTGACGTATTGACTGATTTTCCGGTTTTTCAACCAATC
AGCTATTGGGTCCGTGATGTAATGTCAGAAGACACTGGAATGATGCATAT
CATAAATAAGGTGTTATTCTCCTTTTTCAGACCTTGGGATATCGATCGTT
TCCTAAAGACGCAATGCAAAATGTCAAAGATGGAGATACCGCACTACTTT
CAGCGCTGGGTAAATGTTCGTAAGCATTTCAATAACTTTTATAAAATACA
TCAAGTGAACGTCGAACAAATGTTACAATGCTTAGGAACGGAATTCGTCG
GTCGACAGCATAGTGGTATAGACGATTCACGAAATATAGCTCGTATTATG
ATCGAATTGATAAAAGATGGTTGTCAGGTCATTATTAACGAAACGTTCAG
GTAGCTTCGATGGCTTCTAGGTTGGAATCTGTTCAGTTTAGGTCTATGGC
CGAAGATGTCCATATGGAATTTGGGAGGATTTTGAATTTATTTATGATGT
TTTTGGAATGTTCCATTCATATTCACAAGGTTCCGCGGAAAGCCTTGACA
TTTATTTTGAAGTTGAACATTAATTGGCGGAGAAAAAATCAACAGATAGA
GGGGTTCCACGAACATGTTTTTGATGAAAAGTCAAATTTTAAGCATCAAA
TTTTAAGCATCAAATTATTTTTTTAGTGAATAAAAGTTTTTCCTCAAAAT
TGAAAGAATATGCACTGTACTCTAAAGAATTACTAATGCTTGTTGATCAA
TTGCCACTTCGAAACTGTTTTTCCCAGAATTGTCGACAAGATTTTGCGGC
CACAAAACAGCATGTTGAAGTTAACCTCCCT

Coding sequence (CDS) from alignment at scaffold_3:104305..109985-

>TCONS_00057852 ID=TCONS_00057852|Name=TCONS_00057852|organism=Clytia hemisphaerica|type=CDS|length=4905bp|location=Sequence derived from alignment at scaffold_3:104305..109985- (Clytia hemisphaerica)
ACCTTGGGATATCGATCGTTTCCTAAAGACGCAATGCAAAATGTCAAAGA
TGGAGATACCGCACTACTTTCAGCGCTGGGTAAATGTTCGTAAGCATTTC
AATAACTTTTATAAAATACATCAAGTGAACGTCGAACAAATGTTACAATG
CTTAGGAACGGAATTCGTCGGTCGACAGCATAGTGGTATAGACGATTCAC
GAAATATAGCTCGTATTATGATCGAATTGATAAAAGATGGTTGTCAGGTC
ATTATTAACGAAACGTTCAGGTAGTTGACCGTTGAATCTTCATCGACATT
TGAGACAGTGCTCAATCGTTTTGATAAATGGCTAAAAGATCAAGTCACGC
CTGACCAGAAGTTTGTTATCGTCACTGATGGGTATCAGAATTTCACAGTT
ATTGTCGACCGCTAACCAATCCGATTTTGTCAAAATTTTGCAGAGATTTG
ACTGGTATAACGCAGGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGA
GCCACACAAAGAAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAG
AAAAAGTACACGGATTTTTACATTGTGATCGACTTTGAAGCCACGTGTGA
AAAAGAAAATCCCAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTG
TACTCGTAGATGCAGATACTCTGGAAGTGAAAAATAAGAAACAACTATTC
GAATATTGGTTACAGTTGCCATGGGAACGCAGTATTTTAACCAATGAGAA
TTTGTTAAAGCTTCACAAGACAATGAGTGAAAATGAGGATAAGAAGATAA
CAACGAAAAATTCATCACCAACCACCAAAACTACTCCACCTCCGAAACAG
TTGAATAACCCAAAAGGACCACCATATAGTCACCCTGTTTATAAAAAGAT
AGCTGCAGCAAATGGTAGAATCAATCGAATGTCCAAAAGCCAAGTGGTTG
ATGCATTGGAATATTTGAAACTAAACCCAAAACCTTGGGATATCGATCGT
TTCCTAAAGACGCAATGCAAAATGTCAAAGATGGAGATACCGCACTACTT
TCAGCGCTGGGTAAATGTTCGTAAGCATTTCAATAACTTTTATAAAATAC
ATCAAGTGAACGTCGAACAAATGTTACAATGCTTAGGAACGGAATTCGTC
GGTCGACAGCATAGTGGTATAGACGATTCACGAAATATAGCTCGTATTAT
GATCGAATTGATAAAAGATGGTTGTCAGGTCATTATTAACGAAACGTTCA
GGTAGTTGACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATCGT
TTTGATAAATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTTAT
CGTCACTGATGGGTATCAGAATTTCACAGTTATTGTCGACCGCTAACCAA
TCCGATTTTGTCAAAATTTTGCAGAGATTTGACTGGTATAACGCAGGGGA
AGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCACACAAAGAAGCAGCA
TTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAAGTACACGGATTTTT
ACATTGTGATCGACTTTGAAGCCACGTGTGAAAAAGAAAATCCCAAGGGT
TATCAACATGAGATCATAGAATTCCCTGCTGTACTCGTAGATGCAGATAC
TCTGGAAGTGAAAAATAAGAAACAACTATTCGAATATTGGTTACAGTTGC
CATGGGAACGCAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAG
ACAATGAGTGAAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACC
AACCACCAAAACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGAC
CACCATATAGTCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGA
ATCAATCGAATGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAA
ACTAAACCCAAAACCTTGGGATATCGATCGTTTCCTAAAGACGCAATGCA
AAATGTCAAAGATGGAGATACCGCACTACTTTCAGCGCTGGGTAAATGTT
CGTAAGCATTTCAATAACTTTTATAAAATACATCAAGTGAACGTCGAACA
AATGTTACAATGCTTAGGAACGGAATTCGTCGGTCGACAGCATAGTGGTA
TAGACGATTCACGAAATATAGCTCGTATTATGATCGAATTGATAAAAGAT
GGTTGTCAGGTCATTATTAACGAAACGTTCAGGTAGTTGACCGTTGAATC
TTCATCGACATTTGAGACAGTGCTCAATCGTTTTGATAAATGGCTAAAAG
ATCAAGTCACGCCTGACCAGAAGTTTGTTATCGTCACTGATGGGTATCAG
AATTTCACAGTTATTGTCGACCGCTAACCAATCCGATTTTGTCAAAATTT
TGCAGAGATTTGACTGGTATAACGCAGGGGAAGTCTTGAAGTGTTACAAA
AGCGTTTGAAGAGCCACACAAAGAAGCAGCATTTCCTAGAAAACGATTTC
ACAGAAGAAGAGAAAAAGTACACGGATTTTTACATTGTGATCGACTTTGA
AGCCACGTGTGAAAAAGAAAATCCCAAGGGTTATCAACATGAGATCATAG
AATTCCCTGCTGTACTCGTAGATGCAGATACTCTGGAAGTGAAAAATAAG
AAACAACTATTCGAATATTGGTTACAGTTGCCATGGGAACGCAGTATTTT
AACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGAGTGAAAATGAGG
ATAAGAAGATAACAACGAAAAATTCATCACCAACCACCAAAACTACTCCA
CCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATATAGTCACCCTGT
TTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATCGAATGTCCAAAA
GCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAACCCAAAACCTTGG
GATATCGATCGTTTCCTAAAGACGCAATGCAAAATGTCAAAGATGGAGAT
ACCGCACTACTTTCAGCGCTGGGTAAATGTTCGTAAGCATTTCAATAACT
TTTATAAAATACATCAAGTGAACGTCGAACAAATGTTACAATGCTTAGGA
ACGGAATTCGTCGGTCGACAGCATAGTGGTATAGACGATTCACGAAATAT
AGCTCGTATTATGATCGAATTGATAAAAGATGGTTGTCAGGTCATTATTA
ACGAAACGTTCAGGTAGTTGACCGTTGAATCTTCATCGACATTTGAGACA
GTGCTCAATCGTTTTGATAAATGGCTAAAAGATCAAGTCACGCCTGACCA
GAAGTTTGTTATCGTCACTGATGGGTATCAGAATTTCACAGTTATTGTCG
ACCGCTAACCAATCCGATTTTGTCAAAATTTTGCAGAGATTTGACTGGTA
TAACGCAGGGGAAGTCTTGAAGTGTTACAAAAGCGTTTGAAGAGCCACAC
AAAGAAGCAGCATTTCCTAGAAAACGATTTCACAGAAGAAGAGAAAAAGT
ACACGGATTTTTACATTGTGATCGACTTTGAAGCCACGTGTGAAAAAGAA
AATCCCAAGGGTTATCAACATGAGATCATAGAATTCCCTGCTGTACTCGT
AGATGCAGATACTCTGGAAGTGAAAAATAAGAAACAACTATTCGAATATT
GGTTACAGTTGCCATGGGAACGCAGTATTTTAACCAATGAGAATTTGTTA
AAGCTTCACAAGACAATGAGTGAAAATGAGGATAAGAAGATAACAACGAA
AAATTCATCACCAACCACCAAAACTACTCCACCTCCGAAACAGTTGAATA
ACCCAAAAGGACCACCATATAGTCACCCTGTTTATAAAAAGATAGCTGCA
GCAAATGGTAGAATCAATCGAATGTCCAAAAGCCAAGTGGTTGATGCATT
GGAATATTTGAAACTAAACCCAAAACCTTGGGATATCGATCGTTTCCTAA
AGACGCAATGCAAAATGTCAAAGATGGAGATACCGCACTACTTTCAGCGC
TGGGTAAATGTTCGTAAGCATTTCAATAACTTTTATAAAATACATCAAGT
GAACGTCGAACAAATGTTACAATGCTTAGGAACGGAATTCGTCGGTCGAC
AGCATAGTGGTATAGACGATTCACGAAATATAGCTCGTATTATGATCGAA
TTGATAAAAGATGGTTGTCAGGTCATTATTAACGAAACGTTCAGGTAGTT
GACCGTTGAATCTTCATCGACATTTGAGACAGTGCTCAATCGTTTTGATA
AATGGCTAAAAGATCAAGTCACGCCTGACCAGAAGTTTGTTATCGTCACT
GATGGGTATCAGAATTTCACAGTTATTGTCGACCGCTAACCAATCCGATT
TTGTCAAAATTTTGCAGAGATTTGACTGGTATAACGCAGGGGAAGTCTTG
AAGTGTTACAAAAGCGTTTGAAGAGCCACACAAAGAAGCAGCATTTCCTA
GAAAACGATTTCACAGAAGAAGAGAAAAAGTACACGGATTTTTACATTGT
GATCGACTTTGAAGCCACGTGTGAAAAAGAAAATCCCAAGGGTTATCAAC
ATGAGATCATAGAATTCCCTGCTGTACTCGTAGATGCAGATACTCTGGAA
GTGAAAAATAAGAAACAACTATTCGAATATTGGTTACAGTTGCCATGGGA
ACGCAGTATTTTAACCAATGAGAATTTGTTAAAGCTTCACAAGACAATGA
GTGAAAATGAGGATAAGAAGATAACAACGAAAAATTCATCACCAACCACC
AAAACTACTCCACCTCCGAAACAGTTGAATAACCCAAAAGGACCACCATA
TAGTCACCCTGTTTATAAAAAGATAGCTGCAGCAAATGGTAGAATCAATC
GAATGTCCAAAAGCCAAGTGGTTGATGCATTGGAATATTTGAAACTAAAC
CCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036471XLOC_036471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057852-exon-scaffold_3-1575043694:109683..109985TCONS_00057852-exon-scaffold_3-1575043694:109683..109985Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1575043694:109112..109325TCONS_00057852-exon-scaffold_3-1575043694:109112..109325Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1575043694:108196..108279TCONS_00057852-exon-scaffold_3-1575043694:108196..108279Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1575043694:105731..105837TCONS_00057852-exon-scaffold_3-1575043694:105731..105837Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1575043694:104305..105005TCONS_00057852-exon-scaffold_3-1575043694:104305..105005Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1510915933:109683..109985TCONS_00057852-exon-scaffold_3-1510915933:109683..109985Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1510915933:109112..109325TCONS_00057852-exon-scaffold_3-1510915933:109112..109325Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1510915933:108196..108279TCONS_00057852-exon-scaffold_3-1510915933:108196..108279Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1510915933:105731..105837TCONS_00057852-exon-scaffold_3-1510915933:105731..105837Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1510915933:104305..105005TCONS_00057852-exon-scaffold_3-1510915933:104305..105005Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1491911889:109683..109985TCONS_00057852-exon-scaffold_3-1491911889:109683..109985Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1491911889:109112..109325TCONS_00057852-exon-scaffold_3-1491911889:109112..109325Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1491911889:108196..108279TCONS_00057852-exon-scaffold_3-1491911889:108196..108279Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1491911889:105731..105837TCONS_00057852-exon-scaffold_3-1491911889:105731..105837Clytia hemisphaericaexon
TCONS_00057852-exon-scaffold_3-1491911889:104305..105005TCONS_00057852-exon-scaffold_3-1491911889:104305..105005Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057852-proteinTCONS_00057852-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:104305..109985 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.9016	67.6648	124.627	139.645	22.646	16.9815	25.923	25.016	26.1095	23.2681	18.9603	18.4298	17.4604	17.7244	21.0184	20.7904	30.4948	27.8439	11.2827	16.2134	18.0942	16.3966	47.5595	40.1258	44.4394	43.4005	17.067	15.2724	28.0893	31.9953
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00057852 vs. Swiss-Prot (Human)
Match: ERI1 (3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.557e-74
Identity = 119/263 (45.25%), Postives = 174/263 (66.16%), Query Frame = 2 
Query:  197 YSHPVYKKIAAANGRINRMSKSQVVDALEYLKLNPKGSLEVLQKRLKSHTKKQHFL--ENDFTEEEKKYTDFYIVIDFEATCEKENPKGYQHEIIEFPAVLVDADTLEVVSEFHSYCRPLTNPILSKFCRDLTGITQLTVESSSTFETVLNRFDKWLK-DQVTPDQKFVIVTDGPWDIDRFLKTQCKMSKMEIPHYFQRWVNVRKHFNNFYKI--HQVNVEQMLQCLGTEFVGRQHSGIDDSRNIARIMIELIKDGCQVIINE 970
            +S PVYK+IA  NG INRMSK ++   L   KL  +G  +VL+KRLK++ KKQ  +  E++F +    Y D+  +IDFEATCE+ NP  + HEIIEFP VL++  TLE+   F  Y RP  N  LS FC  LTGITQ  V+ + TF  VL +   W+K  ++    K+ ++TDG WD+ +FL  QC++S+++ P + ++W+N+RK + NFYK+   Q  +  ML+ LG ++ GR H G+DDS+NIARI + +++DGC++ INE
Sbjct:   61 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADS---YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINE 320
The following BLAST results are available for this feature:
BLAST of TCONS_00057852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERI11.557e-7445.253'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE... [more]
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