TCONS_00057886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057886
Unique NameTCONS_00057886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=transcript|length=1020bp
aaaatttttttttccgaaaatcgggctccgtcacattcgagggtttatag
ttatgcatctttgtgcaaaaaaacagaaaaaactaatgagtcaatctcga
gaaaagctggtaacgaacgaacgaacatacatacaacggttaatttatag
gacctccaccagggtaggtccaaaaataattattcttCTGTATGAATCTT
TTCATCGGTTTCATCTAGCAACATTGAAAGTAAATGCTTAGGGATTTCAG
AGCCTCGAACTTTCAAATTACAACGTGCCTTTTCAACTTTCTGCAAGCTA
TTTTTCATGACGCTTAATTTTCTTGACAAATCTCGATTACTGtttgaaaa
tatagaaaaattgGAGTAGATTTCTTGAAGTGTGGAACATGTGCtttcaa
caatttcaaaatgACCACTACCAATAGCATTGATTGACATTCTCATCATT
TCACCTGTCAGGTCAGCGATACCAAGCATATAATCCATTTGAGTCAAAAA
GTAactgaaattttcaacatcaaaaaatgtttGTTGTGTTTCCTCATAAG
AAATCACACTCCCTGTGTCGATATAATGGTAAAGAGAAACTGCCTCTACA
TATTCTTGGATCCCTGGAGAGAAAGCACGCTGAAAGCGATGTATATCTTC
ATTCACCAATTCCAAATTGATCCTATCCAGTAACAGTTTGATCTCTGCTA
TCTTGCTCTTCCCTTCCAACAAAATCTTTTCCTTATTGAATTCTTTTCTC
AACAGAGTAAAGATAGTGCGTTTGCTTTGAATAGTGACATCTCTTGACAA
CTTGACCAGTCTTTCACGCTTGTCATTACGTGTGTCCAATTCACGCTGAT
AAAGAAGAAACTGTGTGTAAAGAGGTGACGACTCATCTAGACTTCCACTC
TCCCTTTTTTTATTCATTACTTGGTTAtcctttttttcataatttccttc
tttattatttttcttcatcttGAGTGAGGGGAAAAACAGAACATAATAAT
AAATGCTGCGATactttatg
Run BLAST on NCBI

protein sequence of TCONS_00057886-protein

>TCONS_00057886-protein ID=TCONS_00057886-protein|Name=TCONS_00057886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
IKYRSIYYYVLFFPSLKMKKNNKEGNYEKKDNQVMNKKRESGSLDESSPL
YTQFLLYQRELDTRNDKRERLVKLSRDVTIQSKRTIFTLLRKEFNKEKIL
LEGKSKIAEIKLLLDRINLELVNEDIHRFQRAFSPGIQEYVEAVSLYHYI
DTGSVISYEETQQTFFDVENFSYFLTQMDYMLGIADLTGEMMRMSINAIG
SGHFEIVESTCSTLQEIYSNFSIFSNSNRDLSRKLSVMKNSLQKVEKARC
NLKVRGSEIPKHLLSMLLDETDEKIHTEE
Run BLAST on NCBI

transcript from alignment at scaffold_300:22551..23570

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at scaffold_300:22551..23570 (Clytia hemisphaerica)
cataaagtATCGCAGCATTTATTATTATGTTCTGTTTTTCCCCTCACTCa
agatgaagaaaaataataaagaaggaaattatgaaaaaaaggaTAACCAA
GTAATGAATAAAAAAAGGGAGAGTGGAAGTCTAGATGAGTCGTCACCTCT
TTACACACAGTTTCTTCTTTATCAGCGTGAATTGGACACACGTAATGACA
AGCGTGAAAGACTGGTCAAGTTGTCAAGAGATGTCACTATTCAAAGCAAA
CGCACTATCTTTACTCTGTTGAGAAAAGAATTCAATAAGGAAAAGATTTT
GTTGGAAGGGAAGAGCAAGATAGCAGAGATCAAACTGTTACTGGATAGGA
TCAATTTGGAATTGGTGAATGAAGATATACATCGCTTTCAGCGTGCTTTC
TCTCCAGGGATCCAAGAATATGTAGAGGCAGTTTCTCTTTACCATTATAT
CGACACAGGGAGTGTGATTTCTTATGAGGAAACACAACaaacattttttg
atgttgaaaatttcagtTACTTTTTGACTCAAATGGATTATATGCTTGGT
ATCGCTGACCTGACAGGTGAAATGATGAGAATGTCAATCAATGCTATTGG
TAGTGGTcattttgaaattgttgaaaGCACATGTTCCACACTTCAAGAAA
TCTACTCcaatttttctatattttcaaaCAGTAATCGAGATTTGTCAAGA
AAATTAAGCGTCATGAAAAATAGCTTGCAGAAAGTTGAAAAGGCACGTTG
TAATTTGAAAGTTCGAGGCTCTGAAATCCCTAAGCATTTACTTTCAATGT
TGCTAGATGAAACCGATGAAAAGATTCATACAGaagaataattatttttg
gacctaccctggtggaggtcctataaattaaccgttgtatgtatgttcgt
tcgttcgttaccagcttttctcgagattgactcattagttttttctgttt
ttttgcacaaagatgcataactataaaccctcgaatgtgacggagcccga
ttttcggaaaaaaaaatttt

Coding sequence (CDS) from alignment at scaffold_300:22551..23570

>TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_300:22551..23570 (Clytia hemisphaerica)
ataaagtATCGCAGCATTTATTATTATGTTCTGTTTTTCCCCTCACTCaa
gatgaagaaaaataataaagaaggaaattatgaaaaaaaggaTAACCAAG
TAATGAATAAAAAAAGGGAGAGTGGAAGTCTAGATGAGTCGTCACCTCTT
TACACACAGTTTCTTCTTTATCAGCGTGAATTGGACACACGTAATGACAA
GCGTGAAAGACTGGTCAAGTTGTCAAGAGATGTCACTATTCAAAGCAAAC
GCACTATCTTTACTCTGTTGAGAAAAGAATTCAATAAGGAAAAGATTTTG
TTGGAAGGGAAGAGCAAGATAGCAGAGATCAAACTGTTACTGGATAGGAT
CAATTTGGAATTGGTGAATGAAGATATACATCGCTTTCAGCGTGCTTTCT
CTCCAGGGATCCAAGAATATGTAGAGGCAGTTTCTCTTTACCATTATATC
GACACAGGGAGTGTGATTTCTTATGAGGAAACACAACaaacattttttga
tgttgaaaatttcagtTACTTTTTGACTCAAATGGATTATATGCTTGGTA
TCGCTGACCTGACAGGTGAAATGATGAGAATGTCAATCAATGCTATTGGT
AGTGGTcattttgaaattgttgaaaGCACATGTTCCACACTTCAAGAAAT
CTACTCcaatttttctatattttcaaaCAGTAATCGAGATTTGTCAAGAA
AATTAAGCGTCATGAAAAATAGCTTGCAGAAAGTTGAAAAGGCACGTTGT
AATTTGAAAGTTCGAGGCTCTGAAATCCCTAAGCATTTACTTTCAATGTT
GCTAGATGAAACCGATGAAAAGATTCATACAGaagaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036496XLOC_036496Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057886-proteinTCONS_00057886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057886-exon-scaffold_300-1491911889:22551..23570TCONS_00057886-exon-scaffold_300-1491911889:22551..23570Clytia hemisphaericaexon
TCONS_00057886-exon-scaffold_300-1510915933:22551..23570TCONS_00057886-exon-scaffold_300-1510915933:22551..23570Clytia hemisphaericaexon
TCONS_00057886-exon-scaffold_300-1575043694:22551..23570TCONS_00057886-exon-scaffold_300-1575043694:22551..23570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_300supercontigscaffold_300:22551..23570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
90.637	84.909	53.8874	46.4166	38.5909	30.2646	32.3063	34.3787	22.7666	20.8039	15.3398	14.5225	9.09327	8.57269	14.843	14.9728	20.8642	17.4219	6.76554	8.25131	13.7861	13.5348	39.5454	33.4646	35.389	29.3949	12.6762	9.91578	20.2936	19.7091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016068Translin_N
IPR002848Translin_fam
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043565 sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00057886 vs. Swiss-Prot (Human)
Match: TSNAX (Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.679e-54
Identity = 114/267 (42.70%), Postives = 163/267 (61.05%), Query Frame = -2 
Query:  183 NKKRESGSLDESSPLYTQFLLYQRELDTRNDKRERLVKLSRDVTIQSKRTIFTLLR--KEFNKEKILLEGKSKIAEIKLLLDRINLELVNEDIHRFQRAFSPGIQEYVEAVSLYHYIDTGSVISYEE-TQQTFFDVEN----------------FSYF---LTQMDYMLGIADLTGEMMRMSINAIGSGHFEIVESTCSTLQEIYXXXXXXXXXNR-DLSRKLSVMKNSLQKVEKARCNLKVRGSEIPKHLLSMLLDETDEKIHTEE 914
            N++RE   ++ SSP+   F  +Q+ELD R+DK ERLVKLSRD+T++SKRTIF L R     + E IL E + K+  ++  + ++  EL  ED+H+F RA + G+QEYVEAVS  H+I T S+IS +E  +Q  F  E+                F  +   +T +DY+LG+ADLTGE+MRM IN++G+G  +        L+++Y  FS   N+   ++S+KL  +K SL KVE A   LKVRGSEIPKH+L+ +     E I  EE
Sbjct:   21 NQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEE 287
The following BLAST results are available for this feature:
BLAST of TCONS_00057886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSNAX2.679e-5442.70Translin-associated protein X OS=Homo sapiens GN=T... [more]
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