Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=transcript|length=1020bpRun BLAST on NCBI protein sequence of TCONS_00057886-protein >TCONS_00057886-protein ID=TCONS_00057886-protein|Name=TCONS_00057886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp IKYRSIYYYVLFFPSLKMKKNNKEGNYEKKDNQVMNKKRESGSLDESSPLRun BLAST on NCBI transcript from alignment at scaffold_300:22551..23570 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at scaffold_300:22551..23570 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_300:22551..23570 >TCONS_00057886 ID=TCONS_00057886|Name=TCONS_00057886|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_300:22551..23570 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057886 vs. Swiss-Prot (Human)
Match: TSNAX (Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.679e-54 Identity = 114/267 (42.70%), Postives = 163/267 (61.05%), Query Frame = -2 Query: 183 NKKRESGSLDESSPLYTQFLLYQRELDTRNDKRERLVKLSRDVTIQSKRTIFTLLR--KEFNKEKILLEGKSKIAEIKLLLDRINLELVNEDIHRFQRAFSPGIQEYVEAVSLYHYIDTGSVISYEE-TQQTFFDVEN----------------FSYF---LTQMDYMLGIADLTGEMMRMSINAIGSGHFEIVESTCSTLQEIYXXXXXXXXXNR-DLSRKLSVMKNSLQKVEKARCNLKVRGSEIPKHLLSMLLDETDEKIHTEE 914 N++RE ++ SSP+ F +Q+ELD R+DK ERLVKLSRD+T++SKRTIF L R + E IL E + K+ ++ + ++ EL ED+H+F RA + G+QEYVEAVS H+I T S+IS +E +Q F E+ F + +T +DY+LG+ADLTGE+MRM IN++G+G + L+++Y FS N+ ++S+KL +K SL KVE A LKVRGSEIPKH+L+ + E I EE Sbjct: 21 NQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEE 287 The following BLAST results are available for this feature:
BLAST of TCONS_00057886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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