Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=transcript|length=999bp aagaaagttaaaaaaaaaaacaacgaaacaaaataaaaaatatgtcaTCA TGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGG TCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTACCGACGCAAG TGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACA AGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTC TTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGCTCTCGGATATCGGCA TTGACGACAAATTTATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGA AGATATATCTATTACAATGGACAAATCTTAGAATTACCCAGAGGACTGGC ACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGA TACGTGAACCTTTTGTGAAGAAATCTGATTTGGATGATATGTCGGTCCAT GAATTCTTTAGAAGAAGATTCAACTGCGAAGAGATCGCCGACTATCTTGC CGACCCATTATGTCACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTT TGCGATCATGCTTTCCAATGCTGTTTGATTACGAGAAAAATTATGGATCG GTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACAAGCCACCAATTAGTTC ATTGTCAAATAAAGCCAAAGAACAACAATGGATGGCATGGTCGGTCAAAG GAGGCATGCAAACGTTGCCAGAATTATGGTCACAACATTTGATTGAGAAA GGCCTGCAATGTCATCTTAATACAGAGTGCAAGAAACTAAAGGTTGAATT CACTACGGATAGTCGTAAATTTCATATCGAGACAAACAATGGAACATTCG AGGCTGACNCGAATTTCTTTGGATGGCTTTTCCAtgcttctttcaacttt tctttgaaGCCTTTTATGGAAACAGCAGCTACCACCTCAGACGGCAATT Run BLAST on NCBI protein sequence of TCONS_00057898-protein >TCONS_00057898-protein ID=TCONS_00057898-protein|Name=TCONS_00057898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MSSWLPIPFRVVILGGGLSGLAAAHTVLKHAQVPTQVTVIESQNRFGGWL ESTRFNDGTVFEHGPRSGRSYGNVALDALSLLSDIGIDDKFIGVPKSNDA ASRRYIYYNGQILELPRGLALAKKWGPLPKSLLGLMIREPFVKKSDLDDM SVHEFFRRRFNCEEIADYLADPLCHGIFGWDSKQLSLRSCFPMLFDYEKN YGSVVKGALLSKGNKPPISSLSNKAKEQQWMAWSVKGGMQTLPELWSQHL IEKGLQCHLNTECKKLKVEFTTDSRKFHIETNNGTFEADXNFFGWLFHAS FNFSLKPFMETAATTSDGN Run BLAST on NCBI transcript from alignment at scaffold_301:88241..93005+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_301:88241..93005+ (Clytia hemisphaerica) aagaaagttaaaaaaaaaaacaacgaaacaaaataaaaaatatgtcaTCA
TGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGG
TCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTACCGACGCAAG
TGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACA
AGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTC
TTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGGTGAGTTTTACCACAA
TTTTCTGATCCTGTTAGCCTAATCTCCGAGCTATGTTATGAGGTTGCAGT
TAtcaacaaaaatacaaaattcaaTATACAAACAAGTATACTAAATAGGT
TTTAatatagacgatgctatcgttcgtttagagggtcagtaaacgcgaGA
AAATATATGCGCAGagtcagggcgtcagggcggtatagttttggaacact
gtaaacacctccgcccCGAACTAaactcgttttcaaatttatcccgcttC
CTAAAATTCCCTTTTTCAATGATAGACGGTAGGATCGTCTAGTTTTAATa
tagataaataaataaataaatatttcattcaAATGTCTAAATCATTAGAG
ATAAGGCAAAGCCAACTGTGTCATCATCAACAGTTTTAATATCACCTCGG
AAACCTATCGTTTGGCAAGTTAAAACATGCTGAGGGGTTTGTATTTCGCC
ACACATACAGTTGGGATTATTGCTCAGACCTATCCGATGCATAAAACTAC
catatcaaaattcaataaGTTGTATCGAAGGAGTCATTATTATGAAGTTT
CCATATCTTGAACATTGTATAGGGAAAGCTCATCTTTCGTGTAGCGTTTT
GTTGTGTTTACTTTCATTTTGTTctcgttttgtttttttatacaaTTTAT
TTTAAGTCTTTTCCATATTTTCAGCTCTCGGATATCGGCATTGACGACAA
ATTTATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCT
ATTACAATGGACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAA
AAGTGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACC
TTTTGTGAAGAAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTA
GAAGAAGATTCAACTGCGAAGAGGTTTGTAGTTCCAAAAGGATAAATATT
TCATTGGGGCCccatttcatatttttgaaaatttactttATCCCCCCCCC
TGATAGAAAAAGTATCAGGTATAAAAAATTTCACTAGAGTCCAGAGGTAC
CTGGGCAGAAAAGGGGCACTTGGGGCACAGCGGTACTTAGTTGTACCAGT
GGTACTTAGTTGTTGTACCAGTGGTACTTATAGTTGTACCACTGTTGGGG
GGGGGGTAAGTGTAACTTTTAATGTTCATTTTTCAATCTAAGTGGTATAA
ACACTCATGTTATTCCCCAGCCCTCTTAGAACTCAAAAGAAATAATATGA
TACTTTGTATTCCTTACAGATCGCCGACTATCTTGCCGACCCATTATGTC
ACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTT
CCAATGCTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGC
TCTTTTGTCCAAGGGTAAGTTTTCATTTATTCATAATATTCATGAGGTAA
TGTTCTCTACGGAAAAACCTCGCGTTTTAGCCAGTaatggcaaatttaaa
ctaggcaaaagttgtataaaatttgccattactggctaaaaccggggtct
ttccgtagaaaatattacgtcatcAATATCATGAATTTGAAGCATCAAGC
GTGGTAGAAAATATGTACGGTTAGgtcaaggatttattatagagactctg
gataaacattttactttttattaatttcattttaaaaaagttctctagct
ctttctttttgtacctTTGCAGGGAAAAAGTTTGATAGTACGGCTAGAAT
TGCTGATTGCATTTGTGAAATCTGGCGTGAGAGAAATATCCTTAGACAAG
AAAAATCCGAATGCTTATAGAgtaacgaaattttcaattgggaatatctt
tccaaaactgtTGCCAGAAGAGCTAAAAGTAACATACTTTAGACTTGGGT
GTCTTAGCTCCACTGTGATGTGAAAATCTTTCGGAGGCACGTGCTGGCAA
AGTGGTTTTTTAAGGTTGAAGATTAAAACTTTCCGGTTTCAACATttaat
ttcttatacataacaCGTCTTTTGTATCTTTCTCACAAATTAAAACGCCA
TAACGACATATAATTGGCAATTAGatagaatctgactctcacaggaaagt
ctCCTTTGGGagttggatgagtgattttcgataaaatatgcaattaaaat
gtttcgaaaaatcatttaatgagggaaggagagtgaacaattaTATCATT
ACTGTGGATATAGCTAGAACttgagaaatcagcaaaaatcaggtACTTGT
ATCATGAAATGTCATGAAGGTAATACAGATATATTTCTTATTACCTCTAT
GCTTATCCAGTATATAATAATTCCTTGGTTAGGTCACGACTTGGTGTTTG
TTGAGAAAGAATCGTTCCCTTTAAGACAATAGGGACCTTTAGCATCTAGG
ACGGCAGATTTATAGATTGTGCGCATATCTGGATGAGTTTTTGATTTAAC
AAAATATCCGAAAGATACTTGCAGTGTAATAAAAAccttaatcgcacgat
gggttattttttcttatttggcacgccctcaaagagagcaattaatcgtt
gattgcatcctgtagagagtaattaatcgttaatcacactcttcaatgct
gcgccaatgtttacaaaaatgattttaatgttttttcttacatttctaat
gcatcgaacgttttaacNTTTGGATATTTAGTGCCGTCTAAAGAAAAACT
GGATATTTTAGGAGTGACTTTCGATTCGCATATCTTTCCAGAGCATGCGT
TAGAAAATAGTTCAACTGTGACGGTCATGGCTGGTGGGCCTCGTTTCCAT
GAACTTTTTGGTGAAAAGGCAGACGAAAATACGGCGACGGAAATAGCCGT
TCGTTCTGTTCGCGATACgttgaatttcaaaagtgaGCCAATCAAAAATG
TGACAAAAATGCATCGACACTGTATACCGCAATACCATGTCGGTCATTac
aaaacagctgaaaatatccAGAACTATTTATTGGAACANtgaattttcct
cgtcctttcggactcggaaaattaataacaaaaaaatcactcgtgcaatt
atattcgaattgcactcgttatcatgtgattacatatactaatgaTACTA
TTTGacacaaaatccaaaaaattatctaagcaacattttttttttgcttc
tcaattttgaattttaattcttcGTTAAAgtcaaacttattttttttcat
ttgacagGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGA
ACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAG
AATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAAT
ACAGAGTGCAAGAAACTAAAGATTCAATTCACTACGGATAGTCGTAAAAT
TCATATCGAGACAAACAATGGAACATTCGAGGCTGATCACGTGATCTCTA
CGCTTTCGGCTCCCGTACTTTTAGACATGATCGAAGATCAAACATTACGT
CACCTGCTACAAGATATTCGGTATACTAATATGGCGGTCATGACTTTACA
ATATAGCGGAGAAAAAATTCCGCATAGTGGGTTTGGATATTTAGTGCCGT
CTAAAGAAAAACTGGATATTTTAGGAGTGACTTTCGATTCGCATATCTTT
CCAGAGCATGCGTTAGAAAATAGTTCAACTGTGACGGTCATGGCTGGTGG
GCCTCGTTTCCATGAACTTTTTGGTGAAAAGGCAGACGAAAATACGGCGA
CGGAAATAGCCGTTCGTTCTGTTCGCGATACgttgaatttcaaaagtgaG
CCAATCAAAAATGTGACAAAAATGCATCGTAACTGTATACCGCAATACCA
TGTCGGTCATTacaaaacagctgaaaatatccGGAACTATTTATTGGAAC
AAAACTTACCGCTAAGCATCATGGGTAACATGTGGGGAGGTCCGGGCGTG
AATGACGTCATCGTGAATGCAAGAAATAACACGATGACGTGGTTGACCAA
TAATCATCTTTGCTGAAAATTTATTTGTAgggatttaattttaatttacg
cTGAATCTTTTGCCTTTTTTGTGTCTACATATGTTCgaatattttaaaga
ttttctttttacataagtggttccgttttatatcagacacatatttcata
tcaggacagtgtcttgctaattgttatattatgctgatatattattatta
ttattattattaaaaNGAGGCATGCAAACGTTGCCAGAATTATGGTCACA
ACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGA
AACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACA
AACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCA
tgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCA
CCTCAGACGGCAATT Coding sequence (CDS) from alignment at scaffold_301:88241..93005+ >TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=CDS|length=4785bp|location=Sequence derived from alignment at scaffold_301:88241..93005+ (Clytia hemisphaerica) atgtcaTCATGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGG ATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTAC CGACGCAAGTGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTA GAAAGCACAAGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAG TGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGCTCTCGG ATATCGGCATTGACGACAAATTTATCGGTGTACCGAAAAGTAACGACGCC GCTTCACGAAGATATATCTATTACAATGGACAAATCTTAGAATTACCCAG AGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCTTTACTCG GTTTGATGATACGTGAACCTTTTGTGAAGAAATCTGATTTGGATGATATG TCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGCGAAGAGATCGCCGA CTATCTTGCCGACCCATTATGTCACGGTATTTTCGGATGGGACTCTAAAC AGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTGATTACGAGAAAAAT TATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACAAGCCACC AATTAGTTCATTGTCAAATAAAGCCAAAGAACAACAATGGATGGCATGGT CGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTATGGTCACAACATTTG ATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGAAACTAAA GGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACAAACAATG GAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCAtgcttct ttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCACCTCAGA CGGCAATatgtcaTCATGGTTACCTATACCGTTCCGCGTTGTCATACTGG GCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAAACATGCT CAAGTACCGACGCAAGTGACCGTTATTGAGTCACAAAATCGGTTTGGAGG CTGGTTAGAAAGCACAAGATTCAATGATGGTACAGTATTTGAACATGGGC CAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCTGTCTCTG CTCTCGGATATCGGCATTGACGACAAATTTATCGGTGTACCGAAAAGTAA CGACGCCGCTTCACGAAGATATATCTATTACAATGGACAAATCTTAGAAT TACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCT TTACTCGGTTTGATGATACGTGAACCTTTTGTGAAGAAATCTGATTTGGA TGATATGTCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGCGAAGAGA TCGCCGACTATCTTGCCGACCCATTATGTCACGGTATTTTCGGATGGGAC TCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTGATTACGA GAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACA AGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGAACAACAATGGATG GCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTATGGTCACA ACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGA AACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACA AACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCA tgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCA CCTCAGACGGCAATatgtcaTCATGGTTACCTATACCGTTCCGCGTTGTC ATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAA ACATGCTCAAGTACCGACGCAAGTGACCGTTATTGAGTCACAAAATCGGT TTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATGGTACAGTATTTGAA CATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCT GTCTCTGCTCTCGGATATCGGCATTGACGACAAATTTATCGGTGTACCGA AAAGTAACGACGCCGCTTCACGAAGATATATCTATTACAATGGACAAATC TTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCC TAAGTCTTTACTCGGTTTGATGATACGTGAACCTTTTGTGAAGAAATCTG ATTTGGATGATATGTCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGC GAAGAGATCGCCGACTATCTTGCCGACCCATTATGTCACGGTATTTTCGG ATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTG ATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAG GGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGAACAACA ATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTAT GGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAG TGCAAGAAACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATAT CGAGACAAACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGC TTTTCCAtgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCA GCTACCACCTCAGACGGCAATatgtcaTCATGGTTACCTATACCGTTCCG CGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTG TTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGAGTCACAA AATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATGGTACAGT ATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGG ATGCTCTGTCTCTGCTCTCGGATATCGGCATTGACGACAAATTTATCGGT GTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATTACAATGG ACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTC CACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTTTGTGAAG AAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAAGAAGATT CAACTGCGAAGAGATCGCCGACTATCTTGCCGACCCATTATGTCACGGTA TTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATG CTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTT GTCCAAGGGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAG AACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCA GAATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAA TACAGAGTGCAAGAAACTAAAGGTTGAATTCACTACGGATAGTCGTAAAT TTCATATCGAGACAAACAATGGAACATTCGAGGCTGACNCGAATTTCTTT GGATGGCTTTTCCAtgcttctttcaacttttctttgaaGCCTTTTATGGA AACAGCAGCTACCACCTCAGACGGCAATatgtcaTCATGGTTACCTATAC CGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCC CACACTGTTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGA GTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATG GTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTG GCTTTGGATGCTCTGTCTCTGCTCTCGGATATCGGCATTGACGACAAATT TATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATT ACAATGGACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAG TGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTT TGTGAAGAAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAA GAAGATTCAACTGCGAAGAGATCGCCGACTATCTTGCCGACCCATTATGT CACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTT TCCAATGCTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTG CTCTTTTGTCCAAGGGTAACAAGCCACCAATTAGTTCATTGTCAAATAAA GCCAAAGAACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAAC GTTGCCAGAATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTC ATCTTAATACAGAGTGCAAGAAACTAAAGGTTGAATTCACTACGGATAGT CGTAAATTTCATATCGAGACAAACAATGGAACATTCGAGGCTGACNCGAA TTTCTTTGGATGGCTTTTCCAtgcttctttcaacttttctttgaaGCCTT TTATGGAAACAGCAGCTACCACCTCAGACGGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057898-exon-scaffold_301-1491911889:88241..88524 | TCONS_00057898-exon-scaffold_301-1491911889:88241..88524 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1510915933:88241..88524 | TCONS_00057898-exon-scaffold_301-1510915933:88241..88524 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1575043694:88241..88524 | TCONS_00057898-exon-scaffold_301-1575043694:88241..88524 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1491911889:89215..89463 | TCONS_00057898-exon-scaffold_301-1491911889:89215..89463 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1510915933:89215..89463 | TCONS_00057898-exon-scaffold_301-1510915933:89215..89463 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1575043694:89215..89463 | TCONS_00057898-exon-scaffold_301-1575043694:89215..89463 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1491911889:89810..89954 | TCONS_00057898-exon-scaffold_301-1491911889:89810..89954 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1510915933:89810..89954 | TCONS_00057898-exon-scaffold_301-1510915933:89810..89954 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1575043694:89810..89954 | TCONS_00057898-exon-scaffold_301-1575043694:89810..89954 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1491911889:91748..91822 | TCONS_00057898-exon-scaffold_301-1491911889:91748..91822 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1510915933:91748..91822 | TCONS_00057898-exon-scaffold_301-1510915933:91748..91822 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1575043694:91748..91822 | TCONS_00057898-exon-scaffold_301-1575043694:91748..91822 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1491911889:92760..93005 | TCONS_00057898-exon-scaffold_301-1491911889:92760..93005 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1510915933:92760..93005 | TCONS_00057898-exon-scaffold_301-1510915933:92760..93005 | Clytia hemisphaerica | exon |
TCONS_00057898-exon-scaffold_301-1575043694:92760..93005 | TCONS_00057898-exon-scaffold_301-1575043694:92760..93005 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_301 | supercontig | scaffold_301:88241..93005 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
GO:0006779 | porphyrin-containing compound biosynthetic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004729 | oxygen-dependent protoporphyrinogen oxidase activity |
GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
biological_process |
GO:0006779 |
porphyrin-containing compound biosynthetic process |
molecular_function |
GO:0016491 |
oxidoreductase activity |
molecular_function |
GO:0004729 |
oxygen-dependent protoporphyrinogen oxidase activity |
Blast
BLAST of TCONS_00057898 vs. Swiss-Prot (Human)
Match: PPOX (Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 4.058e-43 Identity = 89/264 (33.71%), Postives = 139/264 (52.65%), Query Frame = 3 Query: 123 LKHAQVPTQVTVIESQNRFGGWLESTRFNDGTVFEHGPRSGRSYGNVALDALSLLSDIGIDDKFIGVPKSNDAASRRYIYYNGQILELPRGL-ALAKKWGPLPKSLLGLMIREPFVKKSDLDDMSVHEFFRRRFNCEEIADYLADPLCHGIFGWDSKQLSLRSCFPMLFDYEKNYGSVVKGALLSKGNKP-PISSLSNKAKEQQWMAWSVKGGMQTLPELWSQHLIEKGLQCHLNTECKKLKVEFTTDSRKFHIETNNGTFEAD 908
L A P +V ++ES R GGW+ S R +G +FE GPR R G + L L+S++G+D + + V + AA R++Y G + LP GL L + P K L +RE + D +VH F +RR E+A D LC G+F +S++LS+RSCFP LF E+ + S++ G LL G P P S+L +A ++W WS++GG++ LP+ HL +G+ L ++ ++ + + + EAD
Sbjct: 21 LSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLG-PEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG---RWKVSLRDSSLEAD 280
The following BLAST results are available for this feature:
|