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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061998 ID=TCONS_00061998|Name=TCONS_00061998|organism=Clytia hemisphaerica|type=transcript|length=2895bpRun BLAST on NCBI protein sequence of TCONS_00061998-protein >TCONS_00061998-protein ID=TCONS_00061998-protein|Name=TCONS_00061998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=929bp MASEDMDFTLENLLDLALGNPEIGAVNFNFLHEVISEILKHLGISNKSARRun BLAST on NCBI transcript from alignment at scaffold_361:575309..583967- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061998 ID=TCONS_00061998|Name=TCONS_00061998|organism=Clytia hemisphaerica|type=transcript|length=8659bp|location=Sequence derived from alignment at scaffold_361:575309..583967- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:575309..583967- >TCONS_00061998 ID=TCONS_00061998|Name=TCONS_00061998|organism=Clytia hemisphaerica|type=CDS|length=25110bp|location=Sequence derived from alignment at scaffold_361:575309..583967- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061998 vs. Swiss-Prot (Human)
Match: QRIC2 (Glutamine-rich protein 2 OS=Homo sapiens GN=QRICH2 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 6.243e-29 Identity = 102/386 (26.42%), Postives = 182/386 (47.15%), Query Frame = 2
Query: 1805 LEDMTDNFHRSQTDMAQKRSNNGLDEAAINKIRGNIFDIQEQQSKFQQNLDSLEQDSKNKDKFLENINIEIKELQEVKVDKDYVQQQLAGKVDQGSIINKVERDHFDACVRDLDENIQNILQKIDGTEAFTNQKMTTLEGIIGTKVDHDDLKEIHAYIDQRFKTFKPKVQQKQ---RAEETAAGTKKQLIKNCNCISCDRPVEMTTGGDEIVTLPYYQALPGVKSMRPINTFDLQTLRQHMHQTLTQGSNRQRFELSQ-------------------------------ERSRLQKELL--QLCG------VRDLDEFAVSATNRACGGEHTL-IEQNRRNPTKNPNG--AREDGCYGERQLETEVRGRDGHIYKGRLQSAHLPDI 2827
L+DM ++ S+ K DE + +++ I +Q K +L +D + K K + + +++L++ K ++++++ ++ K D+ ++ KV R FDA L+ +Q ++ K+ G E + + L + K+D +L + ++ R+K+ + +++++ +A+E AA ++QL+ + +C+SCDRP+E G I P LPG S+RP F+L+ +RQH + L GS R +L+Q S++ +ELL Q G V D+ ++ S R CGG HTL +R P P G E+ + E ++ G DGHIYKGR+ + LP I
Sbjct: 1234 LQDMVNSLAVSRPSKKAKLQRQ--DEELLGRVQSAILQVQGDCEKLNITTSNLIEDHRQKQKDIAMLYQGLEKLEKEKANREHLEMEIDVKADKSALATKVSRVQFDATTEQLNHMMQELVAKMSGQEQDWQKMLDRLLTEMDNKLDRLELDPVKQLLEDRWKSLRQQLRERPPLYQADEAAA-MRRQLLAHFHCLSCDRPLETPVTGHAIPVTPAGPGLPGHHSIRPYTVFELEQVRQH-SRNLKLGSAFPRGDLAQMEQSVGRLRSMHSKMLMNIEKVQIHFGGSTKASSQIIRELLHAQCLGSPCYKRVTDMADYTYSTVPRRCGGSHTLTYPYHRSRPQHLPRGLYPTEEIQIAMKHDEVDILGLDGHIYKGRMDT-RLPGI 1614 The following BLAST results are available for this feature:
BLAST of TCONS_00061998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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