TCONS_00063253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063253
Unique NameTCONS_00063253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063253 ID=TCONS_00063253|Name=TCONS_00063253|organism=Clytia hemisphaerica|type=transcript|length=2264bp
AAGGATAGAGGCAATATAAAGGTTGCAATTGCAGATAGCGTCTTAGCAAC
TATCAAAAAGCGTTTGACCACCGACGGCCTAGAAGGAAGCTTTTATCCTT
CTGAAAGGCTTGAGGTCAACTAGCGCTGGAAGATGTTGTTCAAAATTCGG
TGTTGAAGAATGGATGCAACCTCCatgaattttcactataatCATTGCTT
ACTTGTGGTGGCAGTTTCCTTAATTTGTTTTTACAATGGAGTCCATCTAC
AGAGCATAACCGATTATGAAGAAAAAGGATGTATAGGTTTACCTGATGGT
GTTTATCCTATAAGGAATCTCAGTGAGTACATCGTATGTGAGAACAACAT
TGGAAATATCAGTTCGTGTCGTCCAAATGAGATTTACAGCACAAACCACA
GTTCGTGCACACCATTGAAAAACATCACTGAAGAAAGCTTTTGTGACAAC
CGGCCAACAGGTGACTGGATGTACATATGGGATTGccacaaattttttca
ttgttatttcaACTGGTACAACGTACAAATCTGTGAAAATAACACTGTTT
ACAATGCTTTGCACGATGTCTGTACATCTGAATCTGAAAACACATGCATG
GCTTACAATCTTACCAAAAGCTCTGGTAATCATGGAACAGAATCTCCATC
TACAACAATGATGCCAATCACCACTATCAGCCCTGGTGGTTCAAATACTA
CAAATTCTACCAACACGACTTCAACTCCATCGACATTTATCACCACACCT
TCACCAATAACAACTCAACTGCCACCAACAACATCTTATCCAACTTTTAG
CCCTGGTGAATCGAATACTACAAATTCTACAAACACCACATTAGCTCCAT
CTACGCTCACCACAACAGCTTTACCCATAACAACTTCACTTCCACTTACA
ACACCTTATCCAACTGAAAATAGCACTTCCTCTTCAAATGCTACCACAGA
CACTAAGGATCTGATATTCCCAAACGATTTACAACAAAAGCTTGCAAACA
ACGAAAGCATTATATTGATTGATGTGCGAATGCCTTGGGAATTGAAATTA
GAAGGAAAAATAGGAGCGTCCATTAATATTCCTCTTCCAAAAATCAGTGA
TGCATTCCAGCTCGAAAAAGAACAGTTTGAATCAAGATATGGCATCAAAA
AACCTAAGAAGGATGATTGTAGTCTAATCTTTCACTGCAAATCTGGAGTT
CGAAGCATGCAAGCTGTCACCATTGTGAAATCACTTGGATATACATGCCC
AAAGAGTCTAGATGGTGGATTTGAAGCATGgaaaaaaatctaccaaaaat
aaaatgatactGAAGATTCAACTTTTGTCGAAGAAGTAAAAGAAGAAGGA
CACATAGCCAAAAATGATTCTTCAAATTGTCTGgtaaattgttttttgta
tGTATAAATGttctttaagtttttttttctaatattcTTTGAGTTTTTGT
GTTATACgttcaatttgtttttttagttACCTGTTTTCTATTATTGGTAA
GATTGTTCCTGCTTTTCTGCTCTTATGGTtgtcttttttgttatttgtct
tttttgttCTGTGTTCTCTGTCCTTTGTCATTTAATTGTTTTTCGTTCTA
TGTTCTctgttttaattgtttttcatttttctctttgatctttgtttttt
tttattgtttaatgttttttgtgtgttttttttcttgttcttcgtttttc
tttacttgtttttttcttgacgttctttttgttttttgtttttttgttca
tCGTTACATCGTaatcttttgttttagttttgtaTTGTATATTATTGTTT
CTTGTTCTAATCCACAAAATGTTATTTTCAGTcgttattttgtaattttt
tgtaattttttgtatTTGACGCTTAGATTTAGATTAAATGTAATTTTTGT
ACACGCATTCATGTTTATTTTTGTACTAGACTCGCTTTATTTTTATACTA
TGTATGTATGTTATTGTCGTTTTCTTATGTTTATGGataatgtttttcat
ttgttttttatgttttttgtttgcttttaccATGTTTTTATACCTGTGTc
agatttttttgttaattgttgTATTTCCAGTCGGTAAGTTTTTATGAATT
GTTTCACTTGCACgttgttttgttcttttgttccAGACTAGGTTTTGTTG
GTGTTTGTTTCgtactttttttgtttacatacaTCAATTATGTTTTGTCA
AATTGTAAAATTATTTGTTGTTCATTAACTGTTTTGTTTAGGTCCCGATA
ATTTTATGTTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00063253-protein

>TCONS_00063253-protein ID=TCONS_00063253-protein|Name=TCONS_00063253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MDATSMNFHYNHCLLVVAVSLICFYNGVHLQSITDYEEKGCIGLPDGVYP
IRNLSEYIVCENNIGNISSCRPNEIYSTNHSSCTPLKNITEESFCDNRPT
GDWMYIWDCHKFFHCYFNWYNVQICENNTVYNALHDVCTSESENTCMAYN
LTKSSGNHGTESPSTTMMPITTISPGGSNTTNSTNTTSTPSTFITTPSPI
TTQLPPTTSYPTFSPGESNTTNSTNTTLAPSTLTTTALPITTSLPLTTPY
PTENSTSSSNATTDTKDLIFPNDLQQKLANNESIILIDVRMPWELKLEGK
IGASINIPLPKISDAFQLEKEQFESRYGIKKPKKDDCSLIFHCKSGVRSM
QAVTIVKSLGYTCPKSLDGGFEAWKKIYQK
Run BLAST on NCBI

transcript from alignment at scaffold_385:175449..180746+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063253 ID=TCONS_00063253|Name=TCONS_00063253|organism=Clytia hemisphaerica|type=transcript|length=5298bp|location=Sequence derived from alignment at scaffold_385:175449..180746+ (Clytia hemisphaerica)
AAGGATAGAGGCAATATAAAGGTTGCAATTGCAGATAGCGTCTTAGCAAC
TATCAAAAAGCGTTTGACCACCGACGGCCTAGAAGGAAGCTTTTATCCTT
CTGAAAGGCTTGAGGTCAACTAGCGCTGGAAGATGTTGTTCAAAATTCGG
TGTTGAAGAATGGATGCAACCTCCatgaattttcactataatCATTGCTT
ACTTGTGGTGGCAGTTTCCTTAATTTGTTTTTACAATGGAGTCCATCTAC
AGAGCAGTAAGTGTCCATTTGCTCGTCCATATTTAAGATTCTTTGTTTGt
tgccaaagctaggggacttGGGAGGCTACaacatttcaacttttattCAT
TGAGTCCTGTCCACATTTCTTACTacttgtgatttgattggtgcGGCCTT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNggggggggggggtactagggcaagatgggttacagggatgctc
cgctggtcagggtacctttttaacctccacgagtccgaGGTaaggtcgca
aaaacaccaaaacagaaaaatcagtccctcgtagggtgcctttttttgga
aaatttagggagaaagtagaaaatttgagaaaattttggaatttcagttc
cattcagggtcacttttttcgcaaatctcgagtcccacgtagggtctatt
tttcgaacctcagcggagcacccccgtcggtcgacaagggtagtaccccc
cggggCTTAATGCACACCGTAAAGAATTCCTGACCACTGAGTAATTAGCC
ATTTATTCTACTGACTGAGGACGAaaaaaatcagcacttttacctcCTTT
AATTTTGCGGGTTAGAACTGCGGGTTGTTCCAAATCATTTCAGTCACTCC
AACGTCTTCAAAAGTGTAGATACCCAAACTCGCTACTGTGATAATCACGG
TGGTACCATTATTAGTCTTTAGTCCCACTGTAACAACGCAGTTTCAATGT
CTAAAGGCTAATCATTAAGCACTTTCCCCGATCTTTCCTTGTCGGTCAGT
TTTACAGCTCTGGTGCAAGAGAGGAGGTTGGGATCGCTTCTGCCTCCCTA
TAAAAAATCGACCAGGTATTTCATGTTACAATTTCCTGTAGGTTTTTTCT
ACCCATAAAAGAACTAAGAAACGTTTTATTTCTTCTTCAGTAACCGATTA
TGAAGAAAAAGGATGTATAGGTTTACCTGATGGTGTTTATCCTATAAGGA
ATCTCAGTGAGTACATCGTATGTGAGAACAACATTGGAAATATCAGTTCG
TGTCGTCCAAATGAGATTTACAGCACAAACCACAGTTCGTGCACACCATT
GAAAAACATCACTGAAGGTAATTTTTTTCCCAGCgtgcaaattgaaaatt
tgtaagaAAATTATTTCAGTTGAGAAAAACTGATATTATGCATGAAATTT
TTCGACCCTTATCGGTATTTACGTCATCCCCAGTAACTTTAACATTGGGT
CATTTGTAACAAGGCTGTTGATAAAGTATTGGTCAGTACTCTCTTTTTTG
TCTCGAATATCACTTCGCTAATCTAAGTCGCTCGGTTTTAAAAAGACTTA
TCGTCAATTGATTAGTAGATGGATAGTCTTGCATTTTCTTCTCTTAGAAA
GCTTTTGTGACAACCGGCCAACAGGTGACTGGATGTACATATGGGATTGc
cacaaattttttcattgttatttcaACTGGTACAACGTACAAATCTGTGA
AAATAACACTGTTTACAATGCTTTGCACGATGTCTGTACATCTGAATCTG
AAAACACATGCATGGCTTACAATCTTACCAAAAGCTCTGGTAATCATGGA
ACAGAATCTCCATCTACAACAATGATGCCAATCACCACTATCAGCCCTGG
TGGTTCAAATACTACAAATTCTACCAACACGACTTCAACTCCATCGACAT
TTATCACCACACCTTCACCAATAACAACTCAACTGCCACCAACAACATCT
TATCCAACTTTTAGCCCTGGTGAATCGAATACTACAAATTCTACAAACAC
CACATTAGCTCCATCTACGCTCACCACAACAGCTTTACCCATAACAACTT
CACTTCCACTTACAACACCTTATCCAACTGAAAATAGCACTTCCTCTTCA
AATGCTACCACAGACACTAAGGATCTGATATTCCCAAACGATTTACAACA
AAAGCTTGCAAACAACGAAAGCATTATATTGATTGATGTGCGAATGCCTT
GGGAATTGAAATTAGAAGGAAAAATAGGAGCGTCCATTAATATTCCTCGT
AAGTAAATCttaaaagttattcttaaatCAATGCCCCGCTCCCCTAGTTC
AGTTCCGTCAACTCCCCTTAAAATTAGTGTGTCAACGAGGAACTTTTCCC
GCTTTCAAGCCGATATAGAATCCCTTCATCGATAAAACTATGTAATCTTT
CCGCAGTAACAACCTCAAGATCTGCTAAAATATTGGAGAACGATAATGAA
GGGTTGCAACATCTCCAAAATACACTGACAGCACCTTGCTGTAACGTAAA
GGGGATTTTCCTTTTTAGTTCCAAAAATCAGTGATGCATTCCAGCTCGAA
AAAGAACAGTTTGAATCAAGATATGGCATCAAAAAACCTAAGAAGGATGA
TTGTAGTCTAATCTTTCACTGCAAATCTGGAGTTCGAAGCATGCAAGCTG
TCACCATTGTGAAATCACTTGGATATACATGGtaaggaaatatttttact
cAACCGTCAACGAATTCATATGTTTTTGGTTCATGAcgtaaaaaacattt
aatttactGCCAATCAAATTAATAATACACCCCTATGGTATTTGAATAAT
ACCTCAAGAACCAAAAACCTTCGAAACAGTGAAAGCTCATCTTTCTTGGG
AAATGTAtatttaaagtctgttcacgataagtgtgcactcttttttcttt
agctataacttttgaaggaattggagagatatttgtgagtggaacaattt
gaagtaaaaaagtctttaaaaaaattctaaaaacgaagatgaaaatgaag
gagaaaaaaatgaagatcttgtagagaagtgcgataacttcattttcact
ggagagattctttgatcttaggaggtcatcactgtgaagaaatttcacta
aaatatttattcaatataaagttatgatacaaagttaataNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtgcacacttatcgtgaatagactttagagtAACAGTCCAGAAA
GATTTCTTTATTACCGGATTAGCAAGACAGGGGGCATCATACAAAGTAGT
TATATAGATTTAAACTAGAGGTTTATTCTAATTCACAACAGTTCCTTTGC
TAGTTAACAAAGATTTTCCATGTTTTTTTAGCCCAAAGAGTCTAGATGGT
GGATTTGAAGCATGgaaaaaaatctaccaaaaataaaatgatactGAAGA
TTCAACTTTTGTCGAAGAAGTAAAAGAAGAAGGACACATAGCCAAAAATG
ATTCTTCAAATTGTCTGgtaaattgttttttgtatGTATAAATGttcttt
aagtttttttttctaatattcTTTGAGTTTTTGTGTTATACgttcaattt
gtttttttagttACCTGTTTTCTATTATTGGTAAGATTGTTCCTGCTTTT
CTGCTCTTATGGTtgtcttttttgttatttgtcttttttgttCTGTGTTC
TCTGTCCTTTGTCATTTAATTGTTTTTCGTTCTATGTTCTctgttttaat
tgtttttcatttttctctttgatctttgtttttttttattgtttaatgtt
ttttgtgtgttttttttcttgttcttcgtttttctttacttgtttttttc
ttgacgttctttttgttttttgtttttttgttcatCGTTACATCGTaatc
ttttgttttagttttgtaTTGTATATTATTGTTTCTTGTTCTAATCCACA
AAATGTTATTTTCAGTcgttattttgtaattttttgtaattttttgtatT
TGACGCTTAGATTTAGATTAAATGTAATTTTTGTACACGCATTCATGTTT
ATTTTTGTACTAGACTCGCTTTATTTTTATACTATGTATGTATGTTATTG
TCGTTTTCTTATGTTTATGGataatgtttttcatttgttttttatgtttt
ttgtttgcttttaccATGTTTTTATACCTGTGTcagatttttttgttaat
tgttgTATTTCCAGTCGGTAAGTTTTTATGAATTGTTTCACTTGCACgtt
gttttgttcttttgttccAGACTAGGTTTTGTTGGTGTTTGTTTCgtact
ttttttgtttacatacaTCAATTATGTTTTGTCAAATTGTAAAATTATTT
GTTGTTCATTAACTGTTTTGTTTAGGTCCCGATAATTTTATGTTTGCG

Coding sequence (CDS) from alignment at scaffold_385:175449..180746+

>TCONS_00063253 ID=TCONS_00063253|Name=TCONS_00063253|organism=Clytia hemisphaerica|type=CDS|length=5715bp|location=Sequence derived from alignment at scaffold_385:175449..180746+ (Clytia hemisphaerica)
ATGGATGCAACCTCCatgaattttcactataatCATTGCTTACTTGTGGT
GGCAGTTTCCTTAATTTGTTTTTACAATGGAGTCCATCTACAGAGCATAA
CCGATTATGAAGAAAAAGGATGTATAGGTTTACCTGATGGTGTTTATCCT
ATAAGGAATCTCAGTGAGTACATCGTATGTGAGAACAACATTGGAAATAT
CAGTTCGTGTCGTCCAAATGAGATTTACAGCACAAACCACAGTTCGTGCA
CACCATTGAAAAACATCACTGAAGAAAGCTTTTGTGACAACCGGCCAACA
GGTGACTGGATGTACATATGGGATTGccacaaattttttcattgttattt
caACTGGTACAACGTACAAATCTGTGAAAATAACACTGTTTACAATGCTT
TGCACGATGTCTGTACATCTGAATCTGAAAACACATGCATGGCTTACAAT
CTTACCAAAAGCTCTGGTAATCATGGAACAGAATCTCCATCTACAACAAT
GATGCCAATCACCACTATCAGCCCTGGTGGTTCAAATACTACAAATTCTA
CCAACACGACTTCAACTCCATCGACATTTATCACCACACCTTCACCAATA
ACAACTCAACTGCCACCAACAACATCTTATCCAACTTTTAGCCCTGGTGA
ATCGAATACTACAAATTCTACAAACACCACATTAGCTCCATCTACGCTCA
CCACAACAGCTTTACCCATAACAACTTCACTTCCACTTACAACACCTTAT
CCAACTGAAAATAGCACTTCCTCTTCAAATGCTACCACAGACACTAAGGA
TCTGATATTCCCAAACGATTTACAACAAAAGCTTGCAAACAACGAAAGCA
TTATATTGATTGATGTGCGAATGCCTTGGGAATTGAAATTAGAAGGAAAA
ATAGGAGCGTCCATTAATATTCCTCTTCCAAAAATCAGTGATGCATTCCA
GCTCGAAAAAGAACAGTTTGAATCAAGATATGGCATCAAAAAACCTAAGA
AGGATGATTGTAGTCTAATCTTTCACTGCAAATCTGGAGTTCGAAGCATG
CAAGCTGTCACCATTGTGAAATCACTTGGATATACATGCCCAAAGAGTCT
AGATGGTGGATTTGAAGCATGgaaaaaaatctaccaaaaataaATGGATG
CAACCTCCatgaattttcactataatCATTGCTTACTTGTGGTGGCAGTT
TCCTTAATTTGTTTTTACAATGGAGTCCATCTACAGAGCATAACCGATTA
TGAAGAAAAAGGATGTATAGGTTTACCTGATGGTGTTTATCCTATAAGGA
ATCTCAGTGAGTACATCGTATGTGAGAACAACATTGGAAATATCAGTTCG
TGTCGTCCAAATGAGATTTACAGCACAAACCACAGTTCGTGCACACCATT
GAAAAACATCACTGAAGAAAGCTTTTGTGACAACCGGCCAACAGGTGACT
GGATGTACATATGGGATTGccacaaattttttcattgttatttcaACTGG
TACAACGTACAAATCTGTGAAAATAACACTGTTTACAATGCTTTGCACGA
TGTCTGTACATCTGAATCTGAAAACACATGCATGGCTTACAATCTTACCA
AAAGCTCTGGTAATCATGGAACAGAATCTCCATCTACAACAATGATGCCA
ATCACCACTATCAGCCCTGGTGGTTCAAATACTACAAATTCTACCAACAC
GACTTCAACTCCATCGACATTTATCACCACACCTTCACCAATAACAACTC
AACTGCCACCAACAACATCTTATCCAACTTTTAGCCCTGGTGAATCGAAT
ACTACAAATTCTACAAACACCACATTAGCTCCATCTACGCTCACCACAAC
AGCTTTACCCATAACAACTTCACTTCCACTTACAACACCTTATCCAACTG
AAAATAGCACTTCCTCTTCAAATGCTACCACAGACACTAAGGATCTGATA
TTCCCAAACGATTTACAACAAAAGCTTGCAAACAACGAAAGCATTATATT
GATTGATGTGCGAATGCCTTGGGAATTGAAATTAGAAGGAAAAATAGGAG
CGTCCATTAATATTCCTCTTCCAAAAATCAGTGATGCATTCCAGCTCGAA
AAAGAACAGTTTGAATCAAGATATGGCATCAAAAAACCTAAGAAGGATGA
TTGTAGTCTAATCTTTCACTGCAAATCTGGAGTTCGAAGCATGCAAGCTG
TCACCATTGTGAAATCACTTGGATATACATGCCCAAAGAGTCTAGATGGT
GGATTTGAAGCATGgaaaaaaatctaccaaaaataaATGGATGCAACCTC
CatgaattttcactataatCATTGCTTACTTGTGGTGGCAGTTTCCTTAA
TTTGTTTTTACAATGGAGTCCATCTACAGAGCATAACCGATTATGAAGAA
AAAGGATGTATAGGTTTACCTGATGGTGTTTATCCTATAAGGAATCTCAG
TGAGTACATCGTATGTGAGAACAACATTGGAAATATCAGTTCGTGTCGTC
CAAATGAGATTTACAGCACAAACCACAGTTCGTGCACACCATTGAAAAAC
ATCACTGAAGAAAGCTTTTGTGACAACCGGCCAACAGGTGACTGGATGTA
CATATGGGATTGccacaaattttttcattgttatttcaACTGGTACAACG
TACAAATCTGTGAAAATAACACTGTTTACAATGCTTTGCACGATGTCTGT
ACATCTGAATCTGAAAACACATGCATGGCTTACAATCTTACCAAAAGCTC
TGGTAATCATGGAACAGAATCTCCATCTACAACAATGATGCCAATCACCA
CTATCAGCCCTGGTGGTTCAAATACTACAAATTCTACCAACACGACTTCA
ACTCCATCGACATTTATCACCACACCTTCACCAATAACAACTCAACTGCC
ACCAACAACATCTTATCCAACTTTTAGCCCTGGTGAATCGAATACTACAA
ATTCTACAAACACCACATTAGCTCCATCTACGCTCACCACAACAGCTTTA
CCCATAACAACTTCACTTCCACTTACAACACCTTATCCAACTGAAAATAG
CACTTCCTCTTCAAATGCTACCACAGACACTAAGGATCTGATATTCCCAA
ACGATTTACAACAAAAGCTTGCAAACAACGAAAGCATTATATTGATTGAT
GTGCGAATGCCTTGGGAATTGAAATTAGAAGGAAAAATAGGAGCGTCCAT
TAATATTCCTCTTCCAAAAATCAGTGATGCATTCCAGCTCGAAAAAGAAC
AGTTTGAATCAAGATATGGCATCAAAAAACCTAAGAAGGATGATTGTAGT
CTAATCTTTCACTGCAAATCTGGAGTTCGAAGCATGCAAGCTGTCACCAT
TGTGAAATCACTTGGATATACATGCCCAAAGAGTCTAGATGGTGGATTTG
AAGCATGgaaaaaaatctaccaaaaataaATGGATGCAACCTCCatgaat
tttcactataatCATTGCTTACTTGTGGTGGCAGTTTCCTTAATTTGTTT
TTACAATGGAGTCCATCTACAGAGCATAACCGATTATGAAGAAAAAGGAT
GTATAGGTTTACCTGATGGTGTTTATCCTATAAGGAATCTCAGTGAGTAC
ATCGTATGTGAGAACAACATTGGAAATATCAGTTCGTGTCGTCCAAATGA
GATTTACAGCACAAACCACAGTTCGTGCACACCATTGAAAAACATCACTG
AAGAAAGCTTTTGTGACAACCGGCCAACAGGTGACTGGATGTACATATGG
GATTGccacaaattttttcattgttatttcaACTGGTACAACGTACAAAT
CTGTGAAAATAACACTGTTTACAATGCTTTGCACGATGTCTGTACATCTG
AATCTGAAAACACATGCATGGCTTACAATCTTACCAAAAGCTCTGGTAAT
CATGGAACAGAATCTCCATCTACAACAATGATGCCAATCACCACTATCAG
CCCTGGTGGTTCAAATACTACAAATTCTACCAACACGACTTCAACTCCAT
CGACATTTATCACCACACCTTCACCAATAACAACTCAACTGCCACCAACA
ACATCTTATCCAACTTTTAGCCCTGGTGAATCGAATACTACAAATTCTAC
AAACACCACATTAGCTCCATCTACGCTCACCACAACAGCTTTACCCATAA
CAACTTCACTTCCACTTACAACACCTTATCCAACTGAAAATAGCACTTCC
TCTTCAAATGCTACCACAGACACTAAGGATCTGATATTCCCAAACGATTT
ACAACAAAAGCTTGCAAACAACGAAAGCATTATATTGATTGATGTGCGAA
TGCCTTGGGAATTGAAATTAGAAGGAAAAATAGGAGCGTCCATTAATATT
CCTCTTCCAAAAATCAGTGATGCATTCCAGCTCGAAAAAGAACAGTTTGA
ATCAAGATATGGCATCAAAAAACCTAAGAAGGATGATTGTAGTCTAATCT
TTCACTGCAAATCTGGAGTTCGAAGCATGCAAGCTGTCACCATTGTGAAA
TCACTTGGATATACATGCCCAAAGAGTCTAGATGGTGGATTTGAAGCATG
gaaaaaaatctaccaaaaataaATGGATGCAACCTCCatgaattttcact
ataatCATTGCTTACTTGTGGTGGCAGTTTCCTTAATTTGTTTTTACAAT
GGAGTCCATCTACAGAGCATAACCGATTATGAAGAAAAAGGATGTATAGG
TTTACCTGATGGTGTTTATCCTATAAGGAATCTCAGTGAGTACATCGTAT
GTGAGAACAACATTGGAAATATCAGTTCGTGTCGTCCAAATGAGATTTAC
AGCACAAACCACAGTTCGTGCACACCATTGAAAAACATCACTGAAGAAAG
CTTTTGTGACAACCGGCCAACAGGTGACTGGATGTACATATGGGATTGcc
acaaattttttcattgttatttcaACTGGTACAACGTACAAATCTGTGAA
AATAACACTGTTTACAATGCTTTGCACGATGTCTGTACATCTGAATCTGA
AAACACATGCATGGCTTACAATCTTACCAAAAGCTCTGGTAATCATGGAA
CAGAATCTCCATCTACAACAATGATGCCAATCACCACTATCAGCCCTGGT
GGTTCAAATACTACAAATTCTACCAACACGACTTCAACTCCATCGACATT
TATCACCACACCTTCACCAATAACAACTCAACTGCCACCAACAACATCTT
ATCCAACTTTTAGCCCTGGTGAATCGAATACTACAAATTCTACAAACACC
ACATTAGCTCCATCTACGCTCACCACAACAGCTTTACCCATAACAACTTC
ACTTCCACTTACAACACCTTATCCAACTGAAAATAGCACTTCCTCTTCAA
ATGCTACCACAGACACTAAGGATCTGATATTCCCAAACGATTTACAACAA
AAGCTTGCAAACAACGAAAGCATTATATTGATTGATGTGCGAATGCCTTG
GGAATTGAAATTAGAAGGAAAAATAGGAGCGTCCATTAATATTCCTCTTC
CAAAAATCAGTGATGCATTCCAGCTCGAAAAAGAACAGTTTGAATCAAGA
TATGGCATCAAAAAACCTAAGAAGGATGATTGTAGTCTAATCTTTCACTG
CAAATCTGGAGTTCGAAGCATGCAAGCTGTCACCATTGTGAAATCACTTG
GATATACATGCCCAAAGAGTCTAGATGGTGGATTTGAAGCATGgaaaaaa
atctaccaaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039638XLOC_039638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063253-exon-scaffold_385-1491911889:175449..175704TCONS_00063253-exon-scaffold_385-1491911889:175449..175704Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1510915933:175449..175704TCONS_00063253-exon-scaffold_385-1510915933:175449..175704Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1575043694:175449..175704TCONS_00063253-exon-scaffold_385-1575043694:175449..175704Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1491911889:177439..177615TCONS_00063253-exon-scaffold_385-1491911889:177439..177615Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1510915933:177439..177615TCONS_00063253-exon-scaffold_385-1510915933:177439..177615Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1575043694:177439..177615TCONS_00063253-exon-scaffold_385-1575043694:177439..177615Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1491911889:177896..178546TCONS_00063253-exon-scaffold_385-1491911889:177896..178546Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1510915933:177896..178546TCONS_00063253-exon-scaffold_385-1510915933:177896..178546Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1575043694:177896..178546TCONS_00063253-exon-scaffold_385-1575043694:177896..178546Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1491911889:178817..178979TCONS_00063253-exon-scaffold_385-1491911889:178817..178979Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1510915933:178817..178979TCONS_00063253-exon-scaffold_385-1510915933:178817..178979Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1575043694:178817..178979TCONS_00063253-exon-scaffold_385-1575043694:178817..178979Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1491911889:179730..180746TCONS_00063253-exon-scaffold_385-1491911889:179730..180746Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1510915933:179730..180746TCONS_00063253-exon-scaffold_385-1510915933:179730..180746Clytia hemisphaericaexon
TCONS_00063253-exon-scaffold_385-1575043694:179730..180746TCONS_00063253-exon-scaffold_385-1575043694:179730..180746Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063253-proteinTCONS_00063253-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:175449..180746 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0465632	0.0183974	2.39714	2.826	3.79706	1.38756	1.59167	2.83996	10.0925	8.16793	3.20562	7.51147	5.92277	5.6987	0.0550564	0	4.10621	3.24855	1.93988	2.35751	9.23078	11.4475	0.497123	0.101056	0	0.0390457
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
IPR001763Rhodanese-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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