TCONS_00063885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063885
Unique NameTCONS_00063885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063885 ID=TCONS_00063885|Name=TCONS_00063885|organism=Clytia hemisphaerica|type=transcript|length=1595bp
CTGgtttttttataacatttaAAAATGCTGCGCTTGGCTTTTATATTTAG
TAGCTGTTGGATTGTAGCTTGCTATGCATGCAGTGATACAGACGAAGATT
GTGGACGATTCAAAGATTTGTGCGGCGTGAACAGTTACGTCGACAAACAC
TGTGTCAAATCATGCGAGAGGTGTGGTGGAGAGGGTGGAgccaccacaac
aacaacaacagcttCTCCTGGCAACGGAAATAGTGCCACTACAAGCACAG
CAACAACACATCCCATGGCAACAAAAGTTCCATGTGTCGACAATGATCCA
GATTGTCCAGGATTGGTAGACTTGTGTGGAATAAACAGCTATGTAGACAA
ATACTGTTTGAAGACGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAG
ATGGCGATGGTGGTGAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTT
TCAAAGGTATCGCAACCTCGAGTAGTAAACGGTGTTGAAGCACAGCCAGG
TGCTTGGCCATGGATCATTTCCTTACAAACAGTTCGAGGATCACATTTTT
GTGGCGGGACTATATTGACACCGACATGGATTTTGACAGCCAGTCATTGT
GTgaagaaatacaaagaaatacCTGGTTTCTTTATGATCGTGGCAGGTGC
TCACGATAAAGAATTGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAGA
GAATCATTGTTCACCCAGAATATGGGCGTTACGATGAATTCAGTGCTGAT
ATCGCTTTAATACAACTGGAAACTCCTCTCAGATTGAACGACCGTGTTGT
TAAAGCTTGTATGCCACAACAAGGCGTTTACCCAAAAGTTGGATAGAATT
GTTACATTGCAGGGTGGGGCGCAATCGACTACCCTGGGGATTCCGTTGAC
ACGTTACAACAGGCACGTCTCCCAGTGGTCGGTACCCCACACCCAGGTTG
CCATAACAATACTGAAGTCGTTTGCGTTGGTCTTGGATTCGGAAGCCAAT
CTAACGGTAAACAACATCCAAACGCATGTCGTGGTGATTCTGGTGGCCCA
TTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAG
TTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTCCAGCCAACA
AATACTTGCCATGGATCAAACAATATGTTAATGAattataaaactttaaa
ttaaaTCATCAAAGAAAAGTTTAATATTTAGTCCCTCCTTACGTGTCAAT
TTTTAGTCGAAATTCTCCATAAATTGAAAACCTCCTCATTGAAATATAGT
TTGTTTTGATCAGTCTGTTGCTGAGAAATGTCCTAGACAATACCCCACAT
TTAGATATATTCAACTGTTTTTGAGATTCTAAAGATGCTTCGTTTGTCTA
AATATTTTGGTTATTTAGGTAAAAGAAGAGGTTGAATTTATGTTTATCAC
TACTTTCACTATCAGTTCTTTAAAGCTTGCCACCAGTTCCCTTTGGGGGT
AAAATGTGGGGGGCgcacggggtttgcgatttccgaaataccgaataatt
ttgccaaaatttccgaaattccgtaaaaaaatacttgcaattccg
Run BLAST on NCBI

protein sequence of TCONS_00063885-protein

>TCONS_00063885-protein ID=TCONS_00063885-protein|Name=TCONS_00063885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MLRLAFIFSSCWIVACYACSDTDEDCGRFKDLCGVNSYVDKHCVKSCERC
GGEGGATTTTTTASPGNGNSATTSTATTHPMATKVPCVDNDPDCPGLVDL
CGINSYVDKYCLKTCPEACKKLNNGDGDGGESQGNKNAKCGVSKVSQPRV
VNGVEAQPGAWPWIISLQTVRGSHFCGGTILTPTWILTASHCVKKYKEIP
GFFMIVAGAHDKELSEQSQQRIEAKRIIVHPEYGRYDEFSADIALIQLET
PLRLNDRVVKACMPQQGVYPKVG
Run BLAST on NCBI

transcript from alignment at scaffold_404:463702..467020+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063885 ID=TCONS_00063885|Name=TCONS_00063885|organism=Clytia hemisphaerica|type=transcript|length=3319bp|location=Sequence derived from alignment at scaffold_404:463702..467020+ (Clytia hemisphaerica)
CTGgtttttttataacatttaAAAATGCTGCGCTTGGCTTTTATATTTAG
TAGCTGTTGGATTGTAGCTTGCTGTGAGTCTCTAAACTTACTGTAGCTAG
GTAAAACTTTATAACAAAAtcggcctaaaaagataatcaaataaacaaat
cctcactgcaaaattttatgctaattttccccactgaattttctgattgg
aaaacaatggaaaatcaATCTCCATCGAGTTTCAATCAGTTATTTTTACC
CCAAACAGGTGAAAAATTCTACCGGgcctgtgagaagagggtgttcAAAT
AACTCAAAATAACCTGTATTCAGCGGGATCGATCCTAAAAACTTGTGAAA
ATGTGGTCTTTCCCTTCCTTTCAAAGATGCATGCAGTGATACAGACGAAG
ATTGTGGACGATTCAAAGATTTGTGCGGCGTGAACAGTTACGTCGACAAA
CACTGTGTCAAATCATGCGAGAGGTGTGGTGGAGAGGGTGGAgccaccac
aacaacaacaacagcttCTCCTGGCAACGGAAATAGTGCCACTACAAGCA
CAGCAACAACACATCCCATGGCAACAAAAGGTCAGTTCGTCATTCAGAAG
CTCAGATATGGCGAGACAGAAAACTATCACCTGTATTTTtgcaaaagcct
taaaatctcaaTAATAAAATGATACTTTTATAAACTTATCAGTCTGCTTT
TCGATATTATTCTCCCTCGATTTAGTTCCATGTGTCGACAATGATCCAGA
TTGTCCAGGATTGGTAGACTTGTGTGGAATAAACAGCTATGTAGACAAAT
ACTGTTTGAAGACGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAGAT
GGCGATGGTGGTGAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTTTC
AAAGGTAATGAGAGGAGGTTAGAAAGTCGCTTTTAATTCAAATCAAGCCT
CAAAAATACGAGAAAAATATCACTCTCCCATCTAAAGGGATGTGGCGAAT
GTGACAATCTAGCCTAGTCAGATTAgacaaaacaattaaaatacGTGCTA
TGTGCGGAGTAATCAGAGTCTGCTCGGAAATCACGAGATGATACATGAAT
ATTTCATTATTCCATTGATCGATGATGTTTTTTTCCAGGTATCGCAACCT
CGAGTAGTAAACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCAT
TTCCTTACAAACAGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGA
CACCGACATGGGTAAGAATTTCTTAGtgcttttattcaatttatCTCCAA
GCCCGTCAGATCTGTAATCATACCGATCCAGACATTCGACATTCTGGCAC
AAGATTACATTTTGGCAAGAAACAAAGTGAAAGATTTCTTTAAGAAGACA
TTGTCCAGGTTCCGTTGGAacgttgaaaaatatttacagatttctttttt
gataactGATCTTGATCTATATTAAGGCAAATTATGTGTGAAAAAAGATG
GCACCATTTTCCCTTTGGGTATGAATATGTTTGAAGATTTCGTGTCCAGG
AAAGTTTTTGACATTAAACACTCTACAATTCGAAACTTAGGAAAGAGCCT
CAAATTTATTTCACATGACTTTCTGATTTTTATATATTAAAGATTTTGAC
AGCCAGTCATTGTGTgaagaaatacaaagaaatacCTGGTTTCTTTATGA
TCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTCTCAACAAAGA
ATCGAAGGTATCTGAAAGCAGATAGTTTAAGGATTGTGTTCACAGCTCTG
TAAAGAGCAGTTTCTAAGCAGAAATTTTTACACACTTTGACAACATCACC
ACGTTTAATCTAAACTTGTGAGAACAAAATAATCTGATGAATCAGCATAT
CTGATAAATGCCTTTCCTATGCTAATACAGTCAACATTTCTCTAATTcgt
ctattattcgaatctttccatGATAGAGtttaaacaaaaatatattAGTA
GTTGGCAACCTCCATAATTCAAATGTTCCTATAATTACCGAATCAGAGAA
TCGAGTAAAAGTTATCAATACATTAGCCCACTACAATTCATCCGAAAATG
TCCCAAAACGCTTTCTTTTTAGCCAAGAGAATCATTGTTCACCCAGAATA
TGGGCGTTACGATGAATTCAGTGCTGATATCGCTTTAATACAACTGGAAA
CTCCTCTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAA
GGCGTTTACCCAAAAGTTGGATAGAATTGTTACATTGCAGGTAAGATTAT
ATTCATCGAACCACCCGTGATTCAGCGTTTAAAACAATTGGAACCGGTGA
TTAAAGCTGGGAAGAATGAGATTCGAGCgtttcatttttcttgaatCATC
ATCGGCGGTGAACTAACATGTCGTTCGTTGAAATATTCATACTTATTCAA
ACCAAAACTCTGTCGATTTCTATGTGTAAACTTCTACGGCTTCTACATCT
GATTTCAATCTCTTCTCTCATTTTGTTTCGCATATAATAACTTACTGAGC
AATGCTAAAAACTAATCCTTTCAATATCTCTTCCAGGGTGGGGCGCAATC
GACTACCCTGGGGATTCCGTTGACACGTTACAACAGGCACGTCTCCCAGT
GGTCGGTACCCCACACCCAGGTTGCCATAACAATACTGAAGTCGTTTGCG
TTGGTCTTGGATTCGGAAGCCAATCTAACGGTAAACAACATCCAAACGCA
TGTCGTGGTGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATC
ATGGACTGTGGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACT
ACACAGCTTACGCTCCAGCCAACAAATACTTGCCATGGATCAAACAATAT
GTTAATGAattataaaactttaaattaaaTCATCAAAGAAAAGTTTAATA
TTTAGTCCCTCCTTACGTGTCAATTTTTAGTCGAAATTCTCCATAAATTG
AAAACCTCCTCATTGAAATATAGTTTGTTTTGATCAGTCTGTTGCTGAGA
AATGTCCTAGACAATACCCCACATTTAGATATATTCAACTGTTTTTGAGA
TTCTAAAGATGCTTCGTTTGTCTAAATATTTTGGTTATTTAGGTAAAAGA
AGAGGTTGAATTTATGTTTATCACTACTTTCACTATCAGTTCTTTAAAGC
TTGCCACCAGTTCCCTTTGGGGGTAAAATGTGGGGGGCgcacggggtttg
cgatttccgaaataccgaataattttgccaaaatttccgaaattccgtaa
aaaaatacttgcaattccg

Coding sequence (CDS) from alignment at scaffold_404:463702..467020+

>TCONS_00063885 ID=TCONS_00063885|Name=TCONS_00063885|organism=Clytia hemisphaerica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_404:463702..467020+ (Clytia hemisphaerica)
ATGCTGCGCTTGGCTTTTATATTTAGTAGCTGTTGGATTGTAGCTTGCTA
TGCATGCAGTGATACAGACGAAGATTGTGGACGATTCAAAGATTTGTGCG
GCGTGAACAGTTACGTCGACAAACACTGTGTCAAATCATGCGAGAGGTGT
GGTGGAGAGGGTGGAgccaccacaacaacaacaacagcttCTCCTGGCAA
CGGAAATAGTGCCACTACAAGCACAGCAACAACACATCCCATGGCAACAA
AAGTTCCATGTGTCGACAATGATCCAGATTGTCCAGGATTGGTAGACTTG
TGTGGAATAAACAGCTATGTAGACAAATACTGTTTGAAGACGTGTCCTGA
AGCGTGTAAGAAGTTGAACAATGGAGATGGCGATGGTGGTGAAAGTCAAG
GAAATAAAAATGCGAAATGTGGAGTTTCAAAGGTATCGCAACCTCGAGTA
GTAAACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTT
ACAAACAGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGACACCGA
CATGGATTTTGACAGCCAGTCATTGTGTgaagaaatacaaagaaatacCT
GGTTTCTTTATGATCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACA
GTCTCAACAAAGAATCGAAGCCAAGAGAATCATTGTTCACCCAGAATATG
GGCGTTACGATGAATTCAGTGCTGATATCGCTTTAATACAACTGGAAACT
CCTCTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGG
CGTTTACCCAAAAGTTGGATAGATGCTGCGCTTGGCTTTTATATTTAGTA
GCTGTTGGATTGTAGCTTGCTATGCATGCAGTGATACAGACGAAGATTGT
GGACGATTCAAAGATTTGTGCGGCGTGAACAGTTACGTCGACAAACACTG
TGTCAAATCATGCGAGAGGTGTGGTGGAGAGGGTGGAgccaccacaacaa
caacaacagcttCTCCTGGCAACGGAAATAGTGCCACTACAAGCACAGCA
ACAACACATCCCATGGCAACAAAAGTTCCATGTGTCGACAATGATCCAGA
TTGTCCAGGATTGGTAGACTTGTGTGGAATAAACAGCTATGTAGACAAAT
ACTGTTTGAAGACGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAGAT
GGCGATGGTGGTGAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTTTC
AAAGGTATCGCAACCTCGAGTAGTAAACGGTGTTGAAGCACAGCCAGGTG
CTTGGCCATGGATCATTTCCTTACAAACAGTTCGAGGATCACATTTTTGT
GGCGGGACTATATTGACACCGACATGGATTTTGACAGCCAGTCATTGTGT
gaagaaatacaaagaaatacCTGGTTTCTTTATGATCGTGGCAGGTGCTC
ACGATAAAGAATTGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAGAGA
ATCATTGTTCACCCAGAATATGGGCGTTACGATGAATTCAGTGCTGATAT
CGCTTTAATACAACTGGAAACTCCTCTCAGATTGAACGACCGTGTTGTTA
AAGCTTGTATGCCACAACAAGGCGTTTACCCAAAAGTTGGATAGATGCTG
CGCTTGGCTTTTATATTTAGTAGCTGTTGGATTGTAGCTTGCTATGCATG
CAGTGATACAGACGAAGATTGTGGACGATTCAAAGATTTGTGCGGCGTGA
ACAGTTACGTCGACAAACACTGTGTCAAATCATGCGAGAGGTGTGGTGGA
GAGGGTGGAgccaccacaacaacaacaacagcttCTCCTGGCAACGGAAA
TAGTGCCACTACAAGCACAGCAACAACACATCCCATGGCAACAAAAGTTC
CATGTGTCGACAATGATCCAGATTGTCCAGGATTGGTAGACTTGTGTGGA
ATAAACAGCTATGTAGACAAATACTGTTTGAAGACGTGTCCTGAAGCGTG
TAAGAAGTTGAACAATGGAGATGGCGATGGTGGTGAAAGTCAAGGAAATA
AAAATGCGAAATGTGGAGTTTCAAAGGTATCGCAACCTCGAGTAGTAAAC
GGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTTACAAAC
AGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGACACCGACATGGA
TTTTGACAGCCAGTCATTGTGTgaagaaatacaaagaaatacCTGGTTTC
TTTATGATCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTCTCA
ACAAAGAATCGAAGCCAAGAGAATCATTGTTCACCCAGAATATGGGCGTT
ACGATGAATTCAGTGCTGATATCGCTTTAATACAACTGGAAACTCCTCTC
AGATTGAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGGCGTTTA
CCCAAAAGTTGGATAGATGCTGCGCTTGGCTTTTATATTTAGTAGCTGTT
GGATTGTAGCTTGCTATGCATGCAGTGATACAGACGAAGATTGTGGACGA
TTCAAAGATTTGTGCGGCGTGAACAGTTACGTCGACAAACACTGTGTCAA
ATCATGCGAGAGGTGTGGTGGAGAGGGTGGAgccaccacaacaacaacaa
cagcttCTCCTGGCAACGGAAATAGTGCCACTACAAGCACAGCAACAACA
CATCCCATGGCAACAAAAGTTCCATGTGTCGACAATGATCCAGATTGTCC
AGGATTGGTAGACTTGTGTGGAATAAACAGCTATGTAGACAAATACTGTT
TGAAGACGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAGATGGCGAT
GGTGGTGAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTTTCAAAGGT
ATCGCAACCTCGAGTAGTAAACGGTGTTGAAGCACAGCCAGGTGCTTGGC
CATGGATCATTTCCTTACAAACAGTTCGAGGATCACATTTTTGTGGCGGG
ACTATATTGACACCGACATGGATTTTGACAGCCAGTCATTGTGTgaagaa
atacaaagaaatacCTGGTTTCTTTATGATCGTGGCAGGTGCTCACGATA
AAGAATTGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAGAGAATCATT
GTTCACCCAGAATATGGGCGTTACGATGAATTCAGTGCTGATATCGCTTT
AATACAACTGGAAACTCCTCTCAGATTGAACGACCGTGTTGTTAAAGCTT
GTATGCCACAACAAGGCGTTTACCCAAAAGTTGGATAGATGCTGCGCTTG
GCTTTTATATTTAGTAGCTGTTGGATTGTAGCTTGCTATGCATGCAGTGA
TACAGACGAAGATTGTGGACGATTCAAAGATTTGTGCGGCGTGAACAGTT
ACGTCGACAAACACTGTGTCAAATCATGCGAGAGGTGTGGTGGAGAGGGT
GGAgccaccacaacaacaacaacagcttCTCCTGGCAACGGAAATAGTGC
CACTACAAGCACAGCAACAACACATCCCATGGCAACAAAAGTTCCATGTG
TCGACAATGATCCAGATTGTCCAGGATTGGTAGACTTGTGTGGAATAAAC
AGCTATGTAGACAAATACTGTTTGAAGACGTGTCCTGAAGCGTGTAAGAA
GTTGAACAATGGAGATGGCGATGGTGGTGAAAGTCAAGGAAATAAAAATG
CGAAATGTGGAGTTTCAAAGGTATCGCAACCTCGAGTAGTAAACGGTGTT
GAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTTACAAACAGTTCG
AGGATCACATTTTTGTGGCGGGACTATATTGACACCGACATGGATTTTGA
CAGCCAGTCATTGTGTgaagaaatacaaagaaatacCTGGTTTCTTTATG
ATCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTCTCAACAAAG
AATCGAAGCCAAGAGAATCATTGTTCACCCAGAATATGGGCGTTACGATG
AATTCAGTGCTGATATCGCTTTAATACAACTGGAAACTCCTCTCAGATTG
AACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGGCGTTTACCCAAA
AGTTGGATAGATGCTGCGCTTGGCTTTTATATTTAGTAGCTGTTGGATTG
TAGCTTGCTATGCATGCAGTGATACAGACGAAGATTGTGGACGATTCAAA
GATTTGTGCGGCGTGAACAGTTACGTCGACAAACACTGTGTCAAATCATG
CGAGAGGTGTGGTGGAGAGGGTGGAgccaccacaacaacaacaacagctt
CTCCTGGCAACGGAAATAGTGCCACTACAAGCACAGCAACAACACATCCC
ATGGCAACAAAAGTTCCATGTGTCGACAATGATCCAGATTGTCCAGGATT
GGTAGACTTGTGTGGAATAAACAGCTATGTAGACAAATACTGTTTGAAGA
CGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAGATGGCGATGGTGGT
GAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTTTCAAAGGTATCGCA
ACCTCGAGTAGTAAACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGA
TCATTTCCTTACAAACAGTTCGAGGATCACATTTTTGTGGCGGGACTATA
TTGACACCGACATGGATTTTGACAGCCAGTCATTGTGTgaagaaatacaa
agaaatacCTGGTTTCTTTATGATCGTGGCAGGTGCTCACGATAAAGAAT
TGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAGAGAATCATTGTTCAC
CCAGAATATGGGCGTTACGATGAATTCAGTGCTGATATCGCTTTAATACA
ACTGGAAACTCCTCTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATGC
CACAACAAGGCGTTTACCCAAAAGTTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040049XLOC_040049Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063885-proteinTCONS_00063885-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063885-exon-scaffold_404-1491911889:463702..463774TCONS_00063885-exon-scaffold_404-1491911889:463702..463774Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:463702..463774TCONS_00063885-exon-scaffold_404-1510915933:463702..463774Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:463702..463774TCONS_00063885-exon-scaffold_404-1575043694:463702..463774Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:464078..464281TCONS_00063885-exon-scaffold_404-1491911889:464078..464281Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:464078..464281TCONS_00063885-exon-scaffold_404-1510915933:464078..464281Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:464078..464281TCONS_00063885-exon-scaffold_404-1575043694:464078..464281Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:464427..464605TCONS_00063885-exon-scaffold_404-1491911889:464427..464605Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:464427..464605TCONS_00063885-exon-scaffold_404-1510915933:464427..464605Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:464427..464605TCONS_00063885-exon-scaffold_404-1575043694:464427..464605Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:464840..464962TCONS_00063885-exon-scaffold_404-1491911889:464840..464962Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:464840..464962TCONS_00063885-exon-scaffold_404-1510915933:464840..464962Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:464840..464962TCONS_00063885-exon-scaffold_404-1575043694:464840..464962Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:465344..465458TCONS_00063885-exon-scaffold_404-1491911889:465344..465458Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:465344..465458TCONS_00063885-exon-scaffold_404-1510915933:465344..465458Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:465344..465458TCONS_00063885-exon-scaffold_404-1575043694:465344..465458Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:465824..465991TCONS_00063885-exon-scaffold_404-1491911889:465824..465991Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:465824..465991TCONS_00063885-exon-scaffold_404-1510915933:465824..465991Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:465824..465991TCONS_00063885-exon-scaffold_404-1575043694:465824..465991Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1491911889:466288..467020TCONS_00063885-exon-scaffold_404-1491911889:466288..467020Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1510915933:466288..467020TCONS_00063885-exon-scaffold_404-1510915933:466288..467020Clytia hemisphaericaexon
TCONS_00063885-exon-scaffold_404-1575043694:466288..467020TCONS_00063885-exon-scaffold_404-1575043694:466288..467020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:463702..467020 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0777726	0.0605014	0.0913723	0.246848	0.174208	0.219369	0.231299	0.349957	0.23902	0.278123	0.103734	0.173005	11.8937	15.8244	0.168529	0.467192	0.139017	0.22612	12.354	16.6328	1.32673	1.25879	0.880453	1.03523	60.1475	63.2701	0.49772	0.407332	0.237073	0.123782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR003582ShKT_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00063885 vs. Swiss-Prot (Human)
Match: PRS33 (Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 8.810e-35
Identity = 89/265 (33.58%), Postives = 133/265 (50.19%), Query Frame = 1 
Query:  418 SQGNKNAKCGVSKVSQPRVVNGVEAQPGAWPWIISLQTVRGSHFCGGTILTPTWILTASHCVKKYKEIPGFFMIVAGAHDKELSEQSQQRIEAKRIIVHPEYGRYDEFSADIALIQLETPLRLNDRVVKACMPQQGVYPKVG*NCYIAGWGAID--YPGDSVDTLQQARLPVV------GTPHPGCHNNTEVVCVGLGFGSQSNGKQHPNACRGDSGGPLMCQQSNGSWTVEGVXXXXX--XXXXXXXXXXXXNKYLPWIKQYVN 1182
            +QG K+A CG  ++S  R+V G + + G WPW  S+Q  RG+H CGG+++ P W+LTA+HC  + + +P  + +  GA     +      +  +R+++ P+Y   D    D+AL+QL  P+ L+ RV   C+P  G  P  G  C + GWG++    P      LQ  R+P++      G  H G         V  G       + H +AC+GDSGGPL C QS GSW + GV S+            Y     Y PWI+  V+
Sbjct:   20 TQGRKSAACGQPRMSS-RIVGGRDGRDGEWPWQASIQH-RGAHVCGGSLIAPQWVLTAAHCFPR-RALPAEYRVRLGALRLGSTSPRTLSVPVRRVLLPPDYSE-DGARGDLALLQLRRPVPLSARVQPVCLPVPGARPPPGTPCRVTGWGSLRPGVPLPEWRPLQGVRVPLLDSRTCDGLYHVGADVPQAERIVLPGSLCAGYPQGHKDACQGDSGGPLTCLQS-GSWVLVGVVSWGKGCALPNRPGVYTSVATYSPWIQARVS 279
The following BLAST results are available for this feature:
BLAST of TCONS_00063885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS338.810e-3533.58Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 ... [more]
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