TCONS_00063966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063966
Unique NameTCONS_00063966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=transcript|length=2257bp
TTTAGCTCTTAGAACAACATCAACAGAGTTTATAGATCAGAAAATATGGA
AGGTGATGGGGAACATTCAGTGACGAACAATGTCGAAAACGAGGATCCTG
AATTGATTGAAAGCGAGACTGTGGATGAAAATGAGATTCTGgtcaaccaa
aataaaattttcaatcatgAAAGTGaggatgatgaagatgaagacgaGGC
CGATGACGAAAAGCCATTGCTTGGAAGCACATCCAAAAAGAATAGCTCAc
caaaagagaaaaagaagatAGCTACAACGAAAATGTCTGCTTTGCTACAC
GATGAAGAGATAAAGGTATCCAAGAAACGATGGTTGATGCTGTTCATTTT
CTCACTGAACACTCTCATGAATGGCGTCCTCATGGTTGGTCTGTCTCCTG
TCACAAACCTCGTGTCCAAACATTACAACCAGAGTCCAACTTTGATCGAA
TGGTCCACCAATATCTTTCTGTTCCTTTACATATGGTTTGCTATCCCAGC
CTCCTACCTCACTAATAAATTCGGTATTCGTAAAGCACTGATCCTGACTT
GTTGTTTGAATGTTCTCAGCACTGTCTTCCACATGCCTGGCTACCATTCT
AATCGATTCTTCTATTATTTTGTTGGTCAAATCCCAGCTGCTATTTCTTA
CAGTTTCGTCTTACAAATGCCGTCGCAAATTTCCGCGTGCTGGTTTCCGG
TCAATGAGCGTGCTTCATCCACCGCTATTGGGGCGTTTATGAATACGTTT
GGCGTTGCGTTGGCGTATCTGCAATCGACAAATATCGTCACTGAGCAAAT
CACTGAAGTTAATATAGAAGATGATGTAAAATCGTTGTTCTTGTTTCAAA
TGGTCATTGCAGTACTGGTAGCGATCATCACAATCGCTTTCTTCATAGAG
AAACCTGATAATCCACCTTCAACTATCAACAAAACAGTATTTGATCCCAA
CTTCTTCGAATCCATCAAAATATTAATGAAAGATTATAATTTTGTCCTAC
TTAGTCAGACTTTTGGTGTTTGTACAGGCATCTTATACACATTAGCTGTT
TTAATCAATCCTTTGATAACAGCCAAATTTCCTGTCGGTCACGTCAAAAT
GATTGGATGGCTCGGATTCACCTTCTTGATGATTTCATACGCCTCATCCT
CGATCTTCGCCATCTGGATCGACAAATTCTCATCGTATCGTACTATTTCA
ATCCTACTCAATATTTGTTCGTTCTGGGTCTGGCTTTTATTTACCgtctt
ttttttggaaaccAACGATTTCACCATCCTATTTTTCCTGTTCACCATAC
TGGGTTTTGTTGGCTTACCGTATAGTTACCTTGGTCTTGAGCATGCTGTC
GAAGTTACATATCCAATCCCTGAATCAACATCCAGCGTATTTATTCTGAT
GGTCAGTAATTTATACACCTTCATTTTTGTTCTGGCGTTTGGTGAAATGA
TTAACTCGCGATATTTGTATCTCACTTGTTATTCGTTCTTGTTTCTGTAT
GGAGTTTCATCGACGTTAGCGATAATCACAAAGACTGaactaaaacgaaa
aaaagcaGAGCTGAAACAAAAACTAGGAGAATTTTAATATCGTGACGTTT
GTCTTTGTGGTGGGAATAAGCCTTCCACACACCGCAGTTGTAGATGACAC
GACCCTTAGTGTGTGAAGATTCAAGCGGGGATTTCTTGCATCATTTTCCA
TCAGTGGTGAATGTAGAAATGTTCTTTGTGTACAGCCATTAATATATGTT
AACTTCAGCAGTTAGTGCATCGCGATACATTGCCCATAAAGATAAAGTTA
TACTTCAATGGAAATATATCAACTACGTCGTATTGACTTAGTAGCAAACA
TTTCACTCACATTTTAAGGCATCTCGGTGGTCACTCTTCGCTTTGTTAGG
CTGCTTATTCATGAATTattgtaaaatgaaaaatatagagTATGTTTCTA
AAATTACTGAAATGCATTGTAAATAATATTGATagtaattgatatttttt
ttaaattggggGTATGtacagaaaatatttattttatgtgGGATTAAATA
CACTTTTCGTTtccttatttcaaattttatactcaattttttaagGCCAA
AGAGGGGCCGCCGCGTAAAAAATGGCTGATAAGGTAGACAACAAATTACC
AAGAATTTATGAGctatatctttttttgactAGAATGACGAGTGACGAAT
ATTTTAGGAAAATTGTGAAAATCGTAATCATAGAACAGTTTGGACCTACA
AATTAAC
Run BLAST on NCBI

protein sequence of TCONS_00063966-protein

>TCONS_00063966-protein ID=TCONS_00063966-protein|Name=TCONS_00063966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MEGDGEHSVTNNVENEDPELIESETVDENEILVNQNKIFNHESEDDEDED
EADDEKPLLGSTSKKNSSPKEKKKIATTKMSALLHDEEIKVSKKRWLMLF
IFSLNTLMNGVLMVGLSPVTNLVSKHYNQSPTLIEWSTNIFLFLYIWFAI
PASYLTNKFGIRKALILTCCLNVLSTVFHMPGYHSNRFFYYFVGQIPAAI
SYSFVLQMPSQISACWFPVNERASSTAIGAFMNTFGVALAYLQSTNIVTE
QITEVNIEDDVKSLFLFQMVIAVLVAIITIAFFIEKPDNPPSTINKTVFD
PNFFESIKILMKDYNFVLLSQTFGVCTGILYTLAVLINPLITAKFPVGHV
KMIGWLGFTFLMISYASSSIFAIWIDKFSSYRTISILLNICSFWVWLLFT
VFFLETNDFTILFFLFTILGFVGLPYSYLGLEHAVEVTYPIPESTSSVFI
LMVSNLYTFIFVLAFGEMINSRYLYLTCYSFLFLYGVSSTLAIITKTELK
RKKAELKQKLGEF
Run BLAST on NCBI

transcript from alignment at scaffold_404:274325..276581

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=transcript|length=2257bp|location=Sequence derived from alignment at scaffold_404:274325..276581 (Clytia hemisphaerica)
GTTAATTTGTAGGTCCAAACTGTTCTATGATTACGATTTTCACAATTTTC
CTAAAATATTCGTCACTCGTCATTCTagtcaaaaaaagatatagCTCATA
AATTCTTGGTAATTTGTTGTCTACCTTATCAGCCATTTTTTACGCGGCGG
CCCCTCTTTGGCcttaaaaaattgagtataaaatttgaaataaggaAACG
AAAAGTGTATTTAATCCcacataaaataaatattttctgtaCATACcccc
aatttaaaaaaaatatcaattactATCAATATTATTTACAATGCATTTCA
GTAATTTTAGAAACATActctatatttttcattttacaatAATTCATGAA
TAAGCAGCCTAACAAAGCGAAGAGTGACCACCGAGATGCCTTAAAATGTG
AGTGAAATGTTTGCTACTAAGTCAATACGACGTAGTTGATATATTTCCAT
TGAAGTATAACTTTATCTTTATGGGCAATGTATCGCGATGCACTAACTGC
TGAAGTTAACATATATTAATGGCTGTACACAAAGAACATTTCTACATTCA
CCACTGATGGAAAATGATGCAAGAAATCCCCGCTTGAATCTTCACACACT
AAGGGTCGTGTCATCTACAACTGCGGTGTGTGGAAGGCTTATTCCCACCA
CAAAGACAAACGTCACGATATTAAAATTCTCCTAGTTTTTGTTTCAGCTC
tgctttttttcgttttagttCAGTCTTTGTGATTATCGCTAACGTCGATG
AAACTCCATACAGAAACAAGAACGAATAACAAGTGAGATACAAATATCGC
GAGTTAATCATTTCACCAAACGCCAGAACAAAAATGAAGGTGTATAAATT
ACTGACCATCAGAATAAATACGCTGGATGTTGATTCAGGGATTGGATATG
TAACTTCGACAGCATGCTCAAGACCAAGGTAACTATACGGTAAGCCAACA
AAACCCAGTATGGTGAACAGGAAAAATAGGATGGTGAAATCGTTggtttc
caaaaaaaagacGGTAAATAAAAGCCAGACCCAGAACGAACAAATATTGA
GTAGGATTGAAATAGTACGATACGATGAGAATTTGTCGATCCAGATGGCG
AAGATCGAGGATGAGGCGTATGAAATCATCAAGAAGGTGAATCCGAGCCA
TCCAATCATTTTGACGTGACCGACAGGAAATTTGGCTGTTATCAAAGGAT
TGATTAAAACAGCTAATGTGTATAAGATGCCTGTACAAACACCAAAAGTC
TGACTAAGTAGGACAAAATTATAATCTTTCATTAATATTTTGATGGATTC
GAAGAAGTTGGGATCAAATACTGTTTTGTTGATAGTTGAAGGTGGATTAT
CAGGTTTCTCTATGAAGAAAGCGATTGTGATGATCGCTACCAGTACTGCA
ATGACCATTTGAAACAAGAACAACGATTTTACATCATCTTCTATATTAAC
TTCAGTGATTTGCTCAGTGACGATATTTGTCGATTGCAGATACGCCAACG
CAACGCCAAACGTATTCATAAACGCCCCAATAGCGGTGGATGAAGCACGC
TCATTGACCGGAAACCAGCACGCGGAAATTTGCGACGGCATTTGTAAGAC
GAAACTGTAAGAAATAGCAGCTGGGATTTGACCAACAAAATAATAGAAGA
ATCGATTAGAATGGTAGCCAGGCATGTGGAAGACAGTGCTGAGAACATTC
AAACAACAAGTCAGGATCAGTGCTTTACGAATACCGAATTTATTAGTGAG
GTAGGAGGCTGGGATAGCAAACCATATGTAAAGGAACAGAAAGATATTGG
TGGACCATTCGATCAAAGTTGGACTCTGGTTGTAATGTTTGGACACGAGG
TTTGTGACAGGAGACAGACCAACCATGAGGACGCCATTCATGAGAGTGTT
CAGTGAGAAAATGAACAGCATCAACCATCGTTTCTTGGATACCTTTATCT
CTTCATCGTGTAGCAAAGCAGACATTTTCGTTGTAGCTatcttctttttc
tcttttggTGAGCTATTCTTTTTGGATGTGCTTCCAAGCAATGGCTTTTC
GTCATCGGCCtcgtcttcatcttcatcatcctCACTTTcatgattgaaaa
ttttattttggttgacCAGAATCTCATTTTCATCCACAGTCTCGCTTTCA
ATCAATTCAGGATCCTCGTTTTCGACATTGTTCGTCACTGAATGTTCCCC
ATCACCTTCCATATTTTCTGATCTATAAACTCTGTTGATGTTGTTCTAAG
AGCTAAA

Coding sequence (CDS) from alignment at scaffold_404:274325..276581

>TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_404:274325..276581 (Clytia hemisphaerica)
TTAAAATTCTCCTAGTTTTTGTTTCAGCTCtgctttttttcgttttagtt
CAGTCTTTGTGATTATCGCTAACGTCGATGAAACTCCATACAGAAACAAG
AACGAATAACAAGTGAGATACAAATATCGCGAGTTAATCATTTCACCAAA
CGCCAGAACAAAAATGAAGGTGTATAAATTACTGACCATCAGAATAAATA
CGCTGGATGTTGATTCAGGGATTGGATATGTAACTTCGACAGCATGCTCA
AGACCAAGGTAACTATACGGTAAGCCAACAAAACCCAGTATGGTGAACAG
GAAAAATAGGATGGTGAAATCGTTggtttccaaaaaaaagacGGTAAATA
AAAGCCAGACCCAGAACGAACAAATATTGAGTAGGATTGAAATAGTACGA
TACGATGAGAATTTGTCGATCCAGATGGCGAAGATCGAGGATGAGGCGTA
TGAAATCATCAAGAAGGTGAATCCGAGCCATCCAATCATTTTGACGTGAC
CGACAGGAAATTTGGCTGTTATCAAAGGATTGATTAAAACAGCTAATGTG
TATAAGATGCCTGTACAAACACCAAAAGTCTGACTAAGTAGGACAAAATT
ATAATCTTTCATTAATATTTTGATGGATTCGAAGAAGTTGGGATCAAATA
CTGTTTTGTTGATAGTTGAAGGTGGATTATCAGGTTTCTCTATGAAGAAA
GCGATTGTGATGATCGCTACCAGTACTGCAATGACCATTTGAAACAAGAA
CAACGATTTTACATCATCTTCTATATTAACTTCAGTGATTTGCTCAGTGA
CGATATTTGTCGATTGCAGATACGCCAACGCAACGCCAAACGTATTCATA
AACGCCCCAATAGCGGTGGATGAAGCACGCTCATTGACCGGAAACCAGCA
CGCGGAAATTTGCGACGGCATTTGTAAGACGAAACTGTAAGAAATAGCAG
CTGGGATTTGACCAACAAAATAATAGAAGAATCGATTAGAATGGTAGCCA
GGCATGTGGAAGACAGTGCTGAGAACATTCAAACAACAAGTCAGGATCAG
TGCTTTACGAATACCGAATTTATTAGTGAGGTAGGAGGCTGGGATAGCAA
ACCATATGTAAAGGAACAGAAAGATATTGGTGGACCATTCGATCAAAGTT
GGACTCTGGTTGTAATGTTTGGACACGAGGTTTGTGACAGGAGACAGACC
AACCATGAGGACGCCATTCATGAGAGTGTTCAGTGAGAAAATGAACAGCA
TCAACCATCGTTTCTTGGATACCTTTATCTCTTCATCGTGTAGCAAAGCA
GACATTTTCGTTGTAGCTatcttctttttctcttttggTGAGCTATTCTT
TTTGGATGTGCTTCCAAGCAATGGCTTTTCGTCATCGGCCtcgtcttcat
cttcatcatcctCACTTTcatgattgaaaattttattttggttgacCAGA
ATCTCATTTTCATCCACAGTCTCGCTTTCAATCAATTCAGGATCCTCGTT
TTCGACATTGTTCGTCACTGAATGTTCCCCATCACCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040091XLOC_040091Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063966-proteinTCONS_00063966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063966-exon-scaffold_404-1491911889:274325..276581TCONS_00063966-exon-scaffold_404-1491911889:274325..276581Clytia hemisphaericaexon
TCONS_00063966-exon-scaffold_404-1510915933:274325..276581TCONS_00063966-exon-scaffold_404-1510915933:274325..276581Clytia hemisphaericaexon
TCONS_00063966-exon-scaffold_404-1575043694:274325..276581TCONS_00063966-exon-scaffold_404-1575043694:274325..276581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:274325..276581 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55908	1.25006	1.05916	0.729195	0.443863	0.424588	3.42983	3.87817	4.62752	3.61636	3.45748	3.42652	5.12687	4.39106	0.167223	0.221681	3.78428	4.23865	8.19461	8.22821	8.57547	7.74474	3.03894	4.02688	6.49107	8.5154	0.213781	0.101401	1.15364	1.48881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00063966 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.198e-39
Identity = 125/439 (28.47%), Postives = 216/439 (49.20%), Query Frame = 1 
Query:  310 IKVSKKRWLMLFIFSLNTLMNGVLMVGLSPVTNLVSKHYNQSPTLIEWSTNIFLFLYIWFAIPASYLTNKFGIRKALILTCCLNVLSTVFHMPGYHSNRFFYYFVGQIPAAISYSFVLQMPSQISACWFPVNERASSTAIGAFMNTFGVALAYLQSTNIVTEQITEVNIEDD------VKSLFLFQMXXXXXXXXXXXXXXXEKPDNPPSTINKTVF-----DPNFFESIKILMKDYNFVLLSQTFGVCTGILYTLAVLINPLITAKFPVGHVKMIGWLGFTFLMISYASSSIFAIWIDKFSSYRTISILLNICSXXXXXXXXXXXXETNDXXXXXXXXXXXXXXXXPYSYLGLEHAVEVTYPIPESTSSVFILMVSNLYTFIFVLAFGEMINSRYLYLTCYSFLFL---YGVSSTLAIITKTELKRKKAE---LKQKL 1575
            IKVS++RW ++ +FS  ++ N    +    + N+    Y  S   I+W +  ++  YI   +P ++L  KFG+R   +    LN L     +     + F    VGQ+  +++  F+L MPS+I++ WF  NE +++ ++  F N  G+A+ +L    +V       NIED       +  +F     +A L+ I+ I  F EKP  PPS      +     D ++  SI  L K+ NFVLL  T+G+  G  Y L+ L+N ++   +P   V   G +G T ++     + I  IW+D+  +Y+  ++++ I +  V ++   F L      ++F     +GF    Y  LG E AVE+TYP  E  SS  + + + ++  IF ++ G++I++   Y T    +FL     + + L    K +L+R+KA    L+ KL
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVP------NIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNA-GRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMT-LVGMVVYTFTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDN---YGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKETLENKL 505
The following BLAST results are available for this feature:
BLAST of TCONS_00063966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC24.198e-3928.47Feline leukemia virus subgroup C receptor-related ... [more]
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