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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=transcript|length=2257bp
TTTAGCTCTTAGAACAACATCAACAGAGTTTATAGATCAGAAAATATGGA
AGGTGATGGGGAACATTCAGTGACGAACAATGTCGAAAACGAGGATCCTG
AATTGATTGAAAGCGAGACTGTGGATGAAAATGAGATTCTGgtcaaccaa
aataaaattttcaatcatgAAAGTGaggatgatgaagatgaagacgaGGC
CGATGACGAAAAGCCATTGCTTGGAAGCACATCCAAAAAGAATAGCTCAc
caaaagagaaaaagaagatAGCTACAACGAAAATGTCTGCTTTGCTACAC
GATGAAGAGATAAAGGTATCCAAGAAACGATGGTTGATGCTGTTCATTTT
CTCACTGAACACTCTCATGAATGGCGTCCTCATGGTTGGTCTGTCTCCTG
TCACAAACCTCGTGTCCAAACATTACAACCAGAGTCCAACTTTGATCGAA
TGGTCCACCAATATCTTTCTGTTCCTTTACATATGGTTTGCTATCCCAGC
CTCCTACCTCACTAATAAATTCGGTATTCGTAAAGCACTGATCCTGACTT
GTTGTTTGAATGTTCTCAGCACTGTCTTCCACATGCCTGGCTACCATTCT
AATCGATTCTTCTATTATTTTGTTGGTCAAATCCCAGCTGCTATTTCTTA
CAGTTTCGTCTTACAAATGCCGTCGCAAATTTCCGCGTGCTGGTTTCCGG
TCAATGAGCGTGCTTCATCCACCGCTATTGGGGCGTTTATGAATACGTTT
GGCGTTGCGTTGGCGTATCTGCAATCGACAAATATCGTCACTGAGCAAAT
CACTGAAGTTAATATAGAAGATGATGTAAAATCGTTGTTCTTGTTTCAAA
TGGTCATTGCAGTACTGGTAGCGATCATCACAATCGCTTTCTTCATAGAG
AAACCTGATAATCCACCTTCAACTATCAACAAAACAGTATTTGATCCCAA
CTTCTTCGAATCCATCAAAATATTAATGAAAGATTATAATTTTGTCCTAC
TTAGTCAGACTTTTGGTGTTTGTACAGGCATCTTATACACATTAGCTGTT
TTAATCAATCCTTTGATAACAGCCAAATTTCCTGTCGGTCACGTCAAAAT
GATTGGATGGCTCGGATTCACCTTCTTGATGATTTCATACGCCTCATCCT
CGATCTTCGCCATCTGGATCGACAAATTCTCATCGTATCGTACTATTTCA
ATCCTACTCAATATTTGTTCGTTCTGGGTCTGGCTTTTATTTACCgtctt
ttttttggaaaccAACGATTTCACCATCCTATTTTTCCTGTTCACCATAC
TGGGTTTTGTTGGCTTACCGTATAGTTACCTTGGTCTTGAGCATGCTGTC
GAAGTTACATATCCAATCCCTGAATCAACATCCAGCGTATTTATTCTGAT
GGTCAGTAATTTATACACCTTCATTTTTGTTCTGGCGTTTGGTGAAATGA
TTAACTCGCGATATTTGTATCTCACTTGTTATTCGTTCTTGTTTCTGTAT
GGAGTTTCATCGACGTTAGCGATAATCACAAAGACTGaactaaaacgaaa
aaaagcaGAGCTGAAACAAAAACTAGGAGAATTTTAATATCGTGACGTTT
GTCTTTGTGGTGGGAATAAGCCTTCCACACACCGCAGTTGTAGATGACAC
GACCCTTAGTGTGTGAAGATTCAAGCGGGGATTTCTTGCATCATTTTCCA
TCAGTGGTGAATGTAGAAATGTTCTTTGTGTACAGCCATTAATATATGTT
AACTTCAGCAGTTAGTGCATCGCGATACATTGCCCATAAAGATAAAGTTA
TACTTCAATGGAAATATATCAACTACGTCGTATTGACTTAGTAGCAAACA
TTTCACTCACATTTTAAGGCATCTCGGTGGTCACTCTTCGCTTTGTTAGG
CTGCTTATTCATGAATTattgtaaaatgaaaaatatagagTATGTTTCTA
AAATTACTGAAATGCATTGTAAATAATATTGATagtaattgatatttttt
ttaaattggggGTATGtacagaaaatatttattttatgtgGGATTAAATA
CACTTTTCGTTtccttatttcaaattttatactcaattttttaagGCCAA
AGAGGGGCCGCCGCGTAAAAAATGGCTGATAAGGTAGACAACAAATTACC
AAGAATTTATGAGctatatctttttttgactAGAATGACGAGTGACGAAT
ATTTTAGGAAAATTGTGAAAATCGTAATCATAGAACAGTTTGGACCTACA
AATTAAC Run BLAST on NCBI protein sequence of TCONS_00063966-protein >TCONS_00063966-protein ID=TCONS_00063966-protein|Name=TCONS_00063966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MEGDGEHSVTNNVENEDPELIESETVDENEILVNQNKIFNHESEDDEDED
EADDEKPLLGSTSKKNSSPKEKKKIATTKMSALLHDEEIKVSKKRWLMLF
IFSLNTLMNGVLMVGLSPVTNLVSKHYNQSPTLIEWSTNIFLFLYIWFAI
PASYLTNKFGIRKALILTCCLNVLSTVFHMPGYHSNRFFYYFVGQIPAAI
SYSFVLQMPSQISACWFPVNERASSTAIGAFMNTFGVALAYLQSTNIVTE
QITEVNIEDDVKSLFLFQMVIAVLVAIITIAFFIEKPDNPPSTINKTVFD
PNFFESIKILMKDYNFVLLSQTFGVCTGILYTLAVLINPLITAKFPVGHV
KMIGWLGFTFLMISYASSSIFAIWIDKFSSYRTISILLNICSFWVWLLFT
VFFLETNDFTILFFLFTILGFVGLPYSYLGLEHAVEVTYPIPESTSSVFI
LMVSNLYTFIFVLAFGEMINSRYLYLTCYSFLFLYGVSSTLAIITKTELK
RKKAELKQKLGEF Run BLAST on NCBI transcript from alignment at scaffold_404:274325..276581 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=transcript|length=2257bp|location=Sequence derived from alignment at scaffold_404:274325..276581 (Clytia hemisphaerica)
GTTAATTTGTAGGTCCAAACTGTTCTATGATTACGATTTTCACAATTTTC
CTAAAATATTCGTCACTCGTCATTCTagtcaaaaaaagatatagCTCATA
AATTCTTGGTAATTTGTTGTCTACCTTATCAGCCATTTTTTACGCGGCGG
CCCCTCTTTGGCcttaaaaaattgagtataaaatttgaaataaggaAACG
AAAAGTGTATTTAATCCcacataaaataaatattttctgtaCATACcccc
aatttaaaaaaaatatcaattactATCAATATTATTTACAATGCATTTCA
GTAATTTTAGAAACATActctatatttttcattttacaatAATTCATGAA
TAAGCAGCCTAACAAAGCGAAGAGTGACCACCGAGATGCCTTAAAATGTG
AGTGAAATGTTTGCTACTAAGTCAATACGACGTAGTTGATATATTTCCAT
TGAAGTATAACTTTATCTTTATGGGCAATGTATCGCGATGCACTAACTGC
TGAAGTTAACATATATTAATGGCTGTACACAAAGAACATTTCTACATTCA
CCACTGATGGAAAATGATGCAAGAAATCCCCGCTTGAATCTTCACACACT
AAGGGTCGTGTCATCTACAACTGCGGTGTGTGGAAGGCTTATTCCCACCA
CAAAGACAAACGTCACGATATTAAAATTCTCCTAGTTTTTGTTTCAGCTC
tgctttttttcgttttagttCAGTCTTTGTGATTATCGCTAACGTCGATG
AAACTCCATACAGAAACAAGAACGAATAACAAGTGAGATACAAATATCGC
GAGTTAATCATTTCACCAAACGCCAGAACAAAAATGAAGGTGTATAAATT
ACTGACCATCAGAATAAATACGCTGGATGTTGATTCAGGGATTGGATATG
TAACTTCGACAGCATGCTCAAGACCAAGGTAACTATACGGTAAGCCAACA
AAACCCAGTATGGTGAACAGGAAAAATAGGATGGTGAAATCGTTggtttc
caaaaaaaagacGGTAAATAAAAGCCAGACCCAGAACGAACAAATATTGA
GTAGGATTGAAATAGTACGATACGATGAGAATTTGTCGATCCAGATGGCG
AAGATCGAGGATGAGGCGTATGAAATCATCAAGAAGGTGAATCCGAGCCA
TCCAATCATTTTGACGTGACCGACAGGAAATTTGGCTGTTATCAAAGGAT
TGATTAAAACAGCTAATGTGTATAAGATGCCTGTACAAACACCAAAAGTC
TGACTAAGTAGGACAAAATTATAATCTTTCATTAATATTTTGATGGATTC
GAAGAAGTTGGGATCAAATACTGTTTTGTTGATAGTTGAAGGTGGATTAT
CAGGTTTCTCTATGAAGAAAGCGATTGTGATGATCGCTACCAGTACTGCA
ATGACCATTTGAAACAAGAACAACGATTTTACATCATCTTCTATATTAAC
TTCAGTGATTTGCTCAGTGACGATATTTGTCGATTGCAGATACGCCAACG
CAACGCCAAACGTATTCATAAACGCCCCAATAGCGGTGGATGAAGCACGC
TCATTGACCGGAAACCAGCACGCGGAAATTTGCGACGGCATTTGTAAGAC
GAAACTGTAAGAAATAGCAGCTGGGATTTGACCAACAAAATAATAGAAGA
ATCGATTAGAATGGTAGCCAGGCATGTGGAAGACAGTGCTGAGAACATTC
AAACAACAAGTCAGGATCAGTGCTTTACGAATACCGAATTTATTAGTGAG
GTAGGAGGCTGGGATAGCAAACCATATGTAAAGGAACAGAAAGATATTGG
TGGACCATTCGATCAAAGTTGGACTCTGGTTGTAATGTTTGGACACGAGG
TTTGTGACAGGAGACAGACCAACCATGAGGACGCCATTCATGAGAGTGTT
CAGTGAGAAAATGAACAGCATCAACCATCGTTTCTTGGATACCTTTATCT
CTTCATCGTGTAGCAAAGCAGACATTTTCGTTGTAGCTatcttctttttc
tcttttggTGAGCTATTCTTTTTGGATGTGCTTCCAAGCAATGGCTTTTC
GTCATCGGCCtcgtcttcatcttcatcatcctCACTTTcatgattgaaaa
ttttattttggttgacCAGAATCTCATTTTCATCCACAGTCTCGCTTTCA
ATCAATTCAGGATCCTCGTTTTCGACATTGTTCGTCACTGAATGTTCCCC
ATCACCTTCCATATTTTCTGATCTATAAACTCTGTTGATGTTGTTCTAAG
AGCTAAA Coding sequence (CDS) from alignment at scaffold_404:274325..276581 >TCONS_00063966 ID=TCONS_00063966|Name=TCONS_00063966|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_404:274325..276581 (Clytia hemisphaerica)
TTAAAATTCTCCTAGTTTTTGTTTCAGCTCtgctttttttcgttttagtt
CAGTCTTTGTGATTATCGCTAACGTCGATGAAACTCCATACAGAAACAAG
AACGAATAACAAGTGAGATACAAATATCGCGAGTTAATCATTTCACCAAA
CGCCAGAACAAAAATGAAGGTGTATAAATTACTGACCATCAGAATAAATA
CGCTGGATGTTGATTCAGGGATTGGATATGTAACTTCGACAGCATGCTCA
AGACCAAGGTAACTATACGGTAAGCCAACAAAACCCAGTATGGTGAACAG
GAAAAATAGGATGGTGAAATCGTTggtttccaaaaaaaagacGGTAAATA
AAAGCCAGACCCAGAACGAACAAATATTGAGTAGGATTGAAATAGTACGA
TACGATGAGAATTTGTCGATCCAGATGGCGAAGATCGAGGATGAGGCGTA
TGAAATCATCAAGAAGGTGAATCCGAGCCATCCAATCATTTTGACGTGAC
CGACAGGAAATTTGGCTGTTATCAAAGGATTGATTAAAACAGCTAATGTG
TATAAGATGCCTGTACAAACACCAAAAGTCTGACTAAGTAGGACAAAATT
ATAATCTTTCATTAATATTTTGATGGATTCGAAGAAGTTGGGATCAAATA
CTGTTTTGTTGATAGTTGAAGGTGGATTATCAGGTTTCTCTATGAAGAAA
GCGATTGTGATGATCGCTACCAGTACTGCAATGACCATTTGAAACAAGAA
CAACGATTTTACATCATCTTCTATATTAACTTCAGTGATTTGCTCAGTGA
CGATATTTGTCGATTGCAGATACGCCAACGCAACGCCAAACGTATTCATA
AACGCCCCAATAGCGGTGGATGAAGCACGCTCATTGACCGGAAACCAGCA
CGCGGAAATTTGCGACGGCATTTGTAAGACGAAACTGTAAGAAATAGCAG
CTGGGATTTGACCAACAAAATAATAGAAGAATCGATTAGAATGGTAGCCA
GGCATGTGGAAGACAGTGCTGAGAACATTCAAACAACAAGTCAGGATCAG
TGCTTTACGAATACCGAATTTATTAGTGAGGTAGGAGGCTGGGATAGCAA
ACCATATGTAAAGGAACAGAAAGATATTGGTGGACCATTCGATCAAAGTT
GGACTCTGGTTGTAATGTTTGGACACGAGGTTTGTGACAGGAGACAGACC
AACCATGAGGACGCCATTCATGAGAGTGTTCAGTGAGAAAATGAACAGCA
TCAACCATCGTTTCTTGGATACCTTTATCTCTTCATCGTGTAGCAAAGCA
GACATTTTCGTTGTAGCTatcttctttttctcttttggTGAGCTATTCTT
TTTGGATGTGCTTCCAAGCAATGGCTTTTCGTCATCGGCCtcgtcttcat
cttcatcatcctCACTTTcatgattgaaaattttattttggttgacCAGA
ATCTCATTTTCATCCACAGTCTCGCTTTCAATCAATTCAGGATCCTCGTT
TTCGACATTGTTCGTCACTGAATGTTCCCCATCACCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063966-exon-scaffold_404-1491911889:274325..276581 | TCONS_00063966-exon-scaffold_404-1491911889:274325..276581 | Clytia hemisphaerica | exon |
| TCONS_00063966-exon-scaffold_404-1510915933:274325..276581 | TCONS_00063966-exon-scaffold_404-1510915933:274325..276581 | Clytia hemisphaerica | exon |
| TCONS_00063966-exon-scaffold_404-1575043694:274325..276581 | TCONS_00063966-exon-scaffold_404-1575043694:274325..276581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:274325..276581 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00063966 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 4.198e-39 Identity = 125/439 (28.47%), Postives = 216/439 (49.20%), Query Frame = 1
Query: 310 IKVSKKRWLMLFIFSLNTLMNGVLMVGLSPVTNLVSKHYNQSPTLIEWSTNIFLFLYIWFAIPASYLTNKFGIRKALILTCCLNVLSTVFHMPGYHSNRFFYYFVGQIPAAISYSFVLQMPSQISACWFPVNERASSTAIGAFMNTFGVALAYLQSTNIVTEQITEVNIEDD------VKSLFLFQMXXXXXXXXXXXXXXXEKPDNPPSTINKTVF-----DPNFFESIKILMKDYNFVLLSQTFGVCTGILYTLAVLINPLITAKFPVGHVKMIGWLGFTFLMISYASSSIFAIWIDKFSSYRTISILLNICSXXXXXXXXXXXXETNDXXXXXXXXXXXXXXXXPYSYLGLEHAVEVTYPIPESTSSVFILMVSNLYTFIFVLAFGEMINSRYLYLTCYSFLFL---YGVSSTLAIITKTELKRKKAE---LKQKL 1575
IKVS++RW ++ +FS ++ N + + N+ Y S I+W + ++ YI +P ++L KFG+R + LN L + + F VGQ+ +++ F+L MPS+I++ WF NE +++ ++ F N G+A+ +L +V NIED + +F +A L+ I+ I F EKP PPS + D ++ SI L K+ NFVLL T+G+ G Y L+ L+N ++ +P V G +G T ++ + I IW+D+ +Y+ ++++ I + V ++ F L ++F +GF Y LG E AVE+TYP E SS + + + ++ IF ++ G++I++ Y T +FL + + L K +L+R+KA L+ KL
Sbjct: 78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVP------NIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNA-GRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMT-LVGMVVYTFTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDN---YGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKETLENKL 505
The following BLAST results are available for this feature:
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