XLOC_033061 (gene) - C. hemisphaerica

Overview
NameXLOC_033061
Unique NameXLOC_033061
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_213:422499..429857+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033061 ID=XLOC_033061|Name=XLOC_033061|organism=Clytia hemisphaerica|type=gene|length=7359bp|location=Sequence derived from alignment at scaffold_213:422499..429857+ (Clytia hemisphaerica)
caaaaagcttcaaaataacATCTGCTTGAAGTTGAAAATCTTTTCACTTT
GCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTTTTGGTAGAGATC
AAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAAAGGTATaaagtt
ttcatatttttggctttttttatttgaaagtggTTATTGGCAGCGCTTCT
TGTAAAAAACAGAACATCACCCAAAATACGACAATGATTTATTTGTCATT
TCAAAGATCGCGCACATGTGTCTATTTTGCTGATGCTCTCTTTTTCAAAT
AGATTTTTAAGCAGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAA
AgggtataaaaacaaaaagcttcaaaataacATCTGCTTGAAGTTGAAAA
TCTTTTCACTTTGCTCTAGCTTCAATAAATGTTCTTTCTCTTCTACTTTT
TTGGTAGAGATCAAAAACAGAGCAAGAAGAACGGTTATAGAAAAAGATAA
AGGTATaaagttttcatatttttggctttttttatttgaaagtggTTATT
GGCAGCGCTTCTTGTAAAAAACAGAACATCACCCAAAATACGACAATGAT
TTATTTGTCATTTCAAAGATCGCGCACATGTGTCTATTTTGCTGATGCTC
TCTTTTTCAAATAGATTTTTAAGCAGTCTAATAAACAATTTGATCACGGG
AAATTTGCATTTATTTAGATTCatccaaattttcaataagttgAACTATA
ATTATGCTTTGGCATTTTGggatttcattttaatttaaaaatgttGTCAT
TTTACTCGTTgtttatttaataatttttttttattttgttccaGCAGCAT
GGCTACAACAGATAACTTTGAAGGTATTGATCCGGCCTTAATCCGTCAAG
AACAAGCTTTAGAAGAATACGGTTTAATCGATCGAGTTCGGCTGTCTGAA
CCTTTGTCGGGAGAAGATCCGAGTACCGCGACAAAAAGTAACAATTTCTT
CTATACTTACTCCTTAAAAGGAGATGGACGACGAACAACCATCGTATGTG
TGATCTTTGTTCTTCTGTTTGTGGGTTGGACTGGTTACACTTTGTGTGAA
GTCATCCTCCAACCTGCTGAGAATGGAAAGAAAACAGCAGAACAACATCA
TGATCATATTAGCAAATATTCTCATCCAGTTTGCGGCAAAATACAATGTG
CAGGTATTGTGGTAttattgttttctatttttctcttATGTAGGGCCTAT
GTAGTGCGTCTGAAAGAAAGTGGAACaaattgaatttaaagaaaaagcct
caaaatgttaaCCTCCATATAACGAGATCTTTGCATTGTCGATAAGTTTC
ATTGGCCTTTATAAATACAAAACTTATGAGGGCTTTTccatattcaaaat
ctgatttttGTGACAACATTGTATTATTCAGCGTTTTGTTACTAGTAGGG
GGTTCGGAGCAttgatttataaagcccgaagtgctagatatcgtgcttta
agccatcgcaagCAAAAAAAACGAATATCGGAGGATTTCCTACTTAACCA
CGACACACTTTTCAGccgaagcacgacatctagcccttcggagtAGCTGG
TATGTGTGAATAGATTTTCTTCTGaaataaaaacgaaaatgataaaaaat
atgggTTAGAAAAAGGGTGAAAAGGCAACTCTTTTTTTAATGCACACTAA
CTCGACCAGCAATAAGACATAAATAAAGTTGGAATTTACCCCTTGTTTTT
GTTCGTTCATAATGAGGATTGATAATCCACATTGTGGGTAAGAAAATACT
TTCTATTAGACTACCTACGTGCGTATCTTATTGTTTTGAGGTATATTATG
ATATTAATTATCACCTGCGTCTTTTCAGTgctaaattattattttatatt
ttaccaaCTGCCTTTTAGGGGACCGCACCCTCttttattagcgagtttat
atattcgagataaatcgagggggacagtataaagcaaagttgacatgtct
ccaaaatcaccgtccactttgctcgacgacggtaaaaacaccaaaataac
gtcgtctgtttaggtgagcaaaggcgatatagagccgtacatcaactatc
gtttttgttttgtatcatttcacttacTGTCGCCCtagatatcctccgat
acataaactcggtattatctTTACTGGtgccaaaaaacaatttttatttt
tccggaaCTATCGATCGTTTTTATGTGACCGAAAAAGTTTATCAATCGCA
CCTCTTTCGTCCCaaagtttttaaagatttcaaGAGCGTGTTTTGGCAAC
TAAGTATTAGTCAGCGAAGGGAGGAACTTTTGCATCAAAACAAGAATTTG
AAGATATATAAACAGTTCCTGTGAATTCTTTCAGAAATTGTTTCATAACT
AGGCTCATAAAATGATCTTACTAGATTATTTGTACTCCATCGGTGAATAC
TTTGgcgtgtttttctttttcaaacattttgtcGTTTGGACCCTCTAGCT
TTGGGAAGAGTTTTCACAAATGTTACAATTAATATTCTCAATAGTATTTA
GAAAACAGTATGATTGGGTTCAGTATACTTAGCTGTGTAAGTTttattat
gtttaaaaaaattgcaagaacAATGAGATCAACCGATAGAAAACGTACTG
TTTCGCCATTATAAGCTTTCTTTCCTTCCAATAGGCGATTGTTCAGAAAA
GAAGCGTTCTCGTCGTGTGGTTAGCGGCGCCGATGTTCGACACGGGGACT
GGCCCTGGATGGCCGGCCTCACATTGGATAAGAAGTTTCGGTGTGGAGGA
GTTCTTGTCAATGAGTTGCATGTGCTGACGTCAGCTCATTGTCTCTACCG
AAGAGGAGAGAAATTGGACTCGAATCAAATTCAAATATTCCTCGGTAttg
tttttcaatcaaataCTTCTTTTGCTCTTATTTCACTACTACTCCATTat
atttgaaaatctttctgCATGGCAAAGTACCAATGCAAGAAACGAACAGT
GCGCAGCGATTGAAATactattcaaaaactttatgCGAGCccactttttt
tcttcagaaataattaaatattttaagaacTTGAGGCTCGATTCTCGTAA
GTTTTGACACAGTTACGTAAGCTAAATAAGACTCTCATAAGTTTCAAAGC
ATATACTGATTTTCGGTTTTCGGTTGACATAAGGCCATTTTATCTTGAAA
ATCTTATGCGAATACGTATTATTACAGAAAATCTTATACAAATGCCTTTG
TTACAGTGTTCCAAGGTTcaagtttctttcttttcaaacgGATTTTCATC
TTTCCATGTTAAATAATATTTGTTTCAAATTTACTTCAGCgaaattcaat
caaatataTTGAATCTTAGCTAAATAATTTCCTTTGTGAAGAAAGCTTCG
CTTCGACCACAAACGAGGTATAANccactagatcaaaagttaaggggtgg
tacaggatcAGCccctgaaccgcccctaaaagcataggttgaatagggtt
ataAGATAAGGTAGTTTCTTTTTTCACTCGGTTGTATGTTATTATGAAAA
TCCAACTTTTCCATTTGAAACTTTAGGGAGTGTCCATCGCTCAGAAGAAA
AACTCGAACCATCGAAAGTAAGGCTTGCAGTAAAAGATTTGATCATACAC
AAACAGTTTGATCCAAAAACTTTGGAAAATGATATTGCACTGGTGAAATT
AACAGATGATGTGACTTTCTCAAAGTCTATCCAGCCTGTTTGTTTACCAA
AATATTCTGCTGATGCACCCGGTTACATGCTGGGTAAGGCTTATATccaa
atgttttaattttttttatcaatgggctcttccagaaaaaaaaccattAT
AGGGGATGGAAGATATTTTGTCTAGGGGTATCgaaaaaatcccgaaaaac
TGTCATGTCCATAAGGTGAATTTGTAATGTCCAGGGGTGAATTTTAGTGA
CCAGGGGGTCGAATTGATGTTTGCTCAGGGGTAAAACGCGTGTCCAGgag
gtgaaaaattgaaacgtCCAGGGGCAGATCATTAAAAAAATAGTATACCT
TCCAcccccatgaacgaattttttctggatGAGCCCAATCAAAAGACTTC
TACAAGCATCGATCAATTACTTGTTCGATACCTTGACATTAACAAAATTG
TAAGATGATCCCTTACTACCTCCCGCATAAAACTcaatatacccctgtct
cgctGAGTGCTTGGCATCTAGATTTCAAAAGTGGTTGCTAAGAAGACATT
CCACTATTTTCTAATTTGATTCACCAGATTCAACTCTGGACGACTTCACT
ATCATTGCCAGAAAATTTTTCCATCGTGGCGATTTGTTCCCATTAAACCT
TGCTATGACATTGGTTTTTTAAAAGCGGTTATTATTGAAGAAAACGTACG
ttatacatatatttttcaacaGGTTGGGGTAAGTTCAAACCAGACGGTCC
TCTTTCACCAAAGCTTCAACAAGTGAAAATGCCACTGGTCACCAATCAAC
AATGTCAAAAGCagaacaacaaaattttcaggCGAGTCAAGGTTCACTCA
GAAAATCACATTTGCATTGGTCATGGTGCGCAAAGTCCTGAATACGCATG
TGCAGGAGATAGTGGGAGTGGTTTCTTTCAACAGAAAAAAGGGATGTGGT
TTCTACAAGGCTTGGTTTCCTGGATTGATCCCTCTTGCAATTCAACCCTT
CACAATACTTACACCGTGTTAACAAATGTTGCTAAATACGAAAATTGGAT
AGGTGAAAACATACACCTTTAAGAAATATTTCATGGCCTGGCTtcaaaac
tgtaaaaaaatttagagtaagtaagtaagtaatgaATTTATTTGTCATAA
TAAGCTAGACGAGCGACCACATCAACTAAGGAGGCTGCATGCTACTGTTG
CAAGAAAAAATAGCccgggggtactacccttgctgactgacgggggtgct
ccgctgaggtttgaaaaatggacctagttgggactcgttttttcaaaaat
tttgccgaaattttcagtgaccctgaatgggactgaaattccaaaatttt
ttcaaatattacctACGAGAGAATTGTGTATTAACCCAAGGTTTTGCATG
AGACGGAACTTCTTTTAACTTTGAGGGGATTAATGTGTTATTTTAAGCTC
CGTTTAAAGTGAGTCTGAATGTTATTTATCAAAGGTCATGGGAAGTTTTC
TAAACAGTCTTCTTTGTCAAGAAGTTGGGAGTTTGAGCCCCCATCCCTGA
CGACGGGACCTACGTTTGTGGACTGAATTAATTTTCCTGAAACTGTACAT
AGAAACGTGTAGTTTTCAACAATTCCAGACTGTTGTATAAAACTCCTGCA
TTCTGAATAGGGTGTTTAAGTTTTTTCCCTAAACACTTCCATCAAAGATT
TTGTAGCGTGTCTTACTCAGTCTTATTTCCTTTGATTACTGAGAGAGTTT
CAAgtcttgaaaatttaaaatttgattaTTAGTAATAGtataggcgagac
caatttaatttgttgttctacgggcagatcgttagaaaaatatgggtcgg
tcggtaaaacaagaataaatttttcatttatcagggttggtaaggtaccg
aaaatattttccaaaaaatatctggatcaacaattcattatttttatgtt
cgatgaagatcataataagattttagtgtatggaatgcttgattttctaa
atttttcaattttttgaattcattttcagctttatcatattcaaatttta
ttctATTGTACTGTAGTTGAAATtcaatatcattattttttttatttaag
ccAAAATTAAGTACAGTAGCACAACAAATTGAATTGGTCTCGCGGTCTCG
CCTAATGTACATAGTAATATTAAGAGGTTTTTATTTACGCTCAATTTTTA
ACCCACCTACAGCAAATTATTtacaacaatttttttattgagATTTTGAC
GGATTCATTTTATATATATTTGGATAGTGTACTTAAGGGTTATTTTATTT
CAGTATTGACGGTTTGAGCTTATTTATATTGACTTGACAAAGCGTCCAGA
GTTGCAGGTTTTTAGTTGAAATGGGACTTACATTTTCTCATTCAGTTTTG
AGAGCTTTTGCAAGTCCTTTCGTGATCACTTCGCCTACGGCGTTTATTGG
ATAATTTATACTGTAAGTTATTTCAACAGATTTTATTTGAGTTATATATT
TATGATTTGATATTAAGAttaagtactctcgggtacttaatagccggggg
ggccccgctaattaatttttcgaaaattttccacccaggacattcttatt
ccacccccccccccgcttattgatttttgggaattttttttttgaaagtt
ctctctttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052238TCONS_00052238Clytia hemisphaericatranscript
TCONS_00052239TCONS_00052239Clytia hemisphaericatranscript
TCONS_00052240TCONS_00052240Clytia hemisphaericatranscript
TCONS_00052241TCONS_00052241Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052238-proteinTCONS_00052238-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:422499..429857 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0.13	0.18	0.26	0.89	0.76	43.88	43.74	42.96	34.3	41.46	51.69	3.51	3.32	1.39	1.18	10.01	10.09	7.5	8.26	17.7	18.5	5.93	8.79	5.94	6.32	7	6.27	0.42	0.49