XLOC_036208 (gene) - C. hemisphaerica

Overview
NameXLOC_036208
Unique NameXLOC_036208
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_289:37882..44534+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036208 ID=XLOC_036208|Name=XLOC_036208|organism=Clytia hemisphaerica|type=gene|length=6653bp|location=Sequence derived from alignment at scaffold_289:37882..44534+ (Clytia hemisphaerica)
cagataaaaaaataaacataaacaaaaaaaatgaaataaggcAGAAAATA
TCAGTACCACCACAGACGCTGACAAATTGATCATGAGACAACAATTTGTT
ATTGGTGTTATTTCTTTGATTGTCTTTCTCTATGTGGTGGAGGttacatt
tttctcttctcCAAAAATTGCACGTCAAAAAGTAATTAAACATGATCGGT
TTTGGTATAGAAAGCGTTTATATGCACACATGGCCTCtattaataataaa
aaaatgatggAAAGGTTCACAGATCTACATTTGAGTAGTGAACAAGCCAT
ATTGGATGCCATGGAAGAGGAATTGAAGGAGCTGGAAAGCTTTGGTATCG
ATGTTGATGATTTTGAAGAACGCCCTATACCAGGTGCTCTAAAACGTGTC
AAATTACCGGCTACTCATATATCCATGGTGGGAGATGATGCTGAAGTTCA
CAGGCAACGAGATGCTCACGATAAGGAGGAATCTCTAAATCCAGAACCGA
TTACTGAAGCTACTAAGAGAGACAATGACTTGGTAACGGATGAGAGTGAA
GGAAATTTTACGCGTGAGTTAAGTCGTCGGTTTCGAGTTCGGGATCCTGA
TCCTGATGATCTCcagaaattgaccaaaaaaggTATCGATTTTGAACGGG
AGACTGATCCTTTAGCGGAATCTACTTATTGTGAAAAAGAAGtctttttg
accattttggtGATTAGTCAACCTAAGAGTGTCGAACGGCGGAGGTTTAT
TCGTGACACCTGGGCTCGAAGCTACCAAGAGGATTTTAGAAAGCTCAAAG
GGAAACAGCCTTTCCCTAATGGGAAAACCTATTCCACTTCAGATGTTGTA
CGTGTAGTTTTCGTTGTGGGTCAGTCAGCGCAAACTGATACCAAAGTAAT
GCAATCAGTCAAAGAAGAATCTCGAATGAACAAAGATATTGTTTTTGGTA
GTATGATGGAGAATTACCGAAATTTAACCACGAAAACAAAACTTGGTTTG
AAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGA
TGATGTTTTTGTAAATCCAGTGGTGCTGGTGGAATGGTTGAAAGAGATCC
CGAAAACGAACTTGTATACTGGATGGTGTAACTTCAATTCACCTGTTGTA
AGGGATAAGCGCAATAAGTGGTATGATGTTTCTTCTTATtcactttttta
ttgttttcgcTCACTAGCTCACTCACTAAGAGAAAGGTTGGCTCTCTGTT
TTAGAATGCTTTCAAGAATATTAGAATTAGAATATAAAATCCTTTCAAGT
TGAAAATACCTCATTAGCTCATtatggcctttttcgacgaaatTCTTCTC
GAATTAGGTTCTGAGTTACAATTTGAAAATCGAAAGTCATTACCGTAATA
TAACTTGCTTATTTCTTGCACggcattttaaaacaaaagaagaacgACTT
CCTCCGGGTGAACACAATCGGAAAACCTGTTTAGTCAGCATAAGTTGTGC
GCTTGCTTTTGTTTATCACTAAAATTATTGTCTTTAATCTTCCTAATCGT
TATGATATTTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGG
AAGAGAAGTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCT
GATGTGTTAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCC
TATGGAAGATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTC
AACCGAGAGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACT
GAAAATAGTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGG
TCAAAACCTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATT
GTTGATTATAGTATTNAATTCACCTGTTGTAAGGGATAAGCGCAATAAGT
GGTATGATGTTTCTTCTTATtcacttttttattgttttcgcTCACTAGCT
CACTCACTGAGAGAAAGGTTGGCTCTCTGTTTTAGAATGCTTTCAAGAAT
ATTAGAATTTGAATATAAAATCCTTTCAAGTTGAAAATACCTCATTATGG
CCTTTTTCGACTGAATTCTTCTCGAATTAGGTTCTGAGTTACAAATTGAA
AATCGAAAGTCATTACGTAATATAACTTGCTTATAACTTATGTAGCATCG
TGCATTTCTTGCACggcattttaaaacaaaagaagaacgACTTCCTCCGG
GTGAACAAAATTGGAAAACCTGTTTAGTCAGCATAAGTTGTGCGCTTGCT
TTTGTTTATCATTAAAATTGTTGTCTTTAATCTTCCTAATCGTTATGATA
TTTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGGAAGAGAA
GTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTGATGTGT
TAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCTATGGAA
GATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCAACCGAG
AGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACTGAAAATA
GTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGGTCAAAAC
CTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATTGTTGATT
ATAGTATTATTATTTCAGTTTTCTCCCTGATTTTGCTATATATTACAAAT
ATATTGAAAGACCTTTTTTCCATAGCTCTATAGATGTATTCAATCAGTGA
AATCCCAAAATTTACTTTGATGCAGATCTTCCGCTTGCGTTGAACAGTAA
TGGGGACTTAGGAGTTggttattttttgtaattttaaggttttttaatta
tcttttaatgtttttttaagtttttaccgtatgttttttatgtttttgac
tTATTTTTCGATTTCGGACATACTTTTTATATTATTTGTATGCTGTTTTT
ATGtacctgtttttttttgtttgaatgcGATGTCAAATGCTTTATCTTTT
TTCAGCTTTGCTTTTTGTGTGTCTTATTGCCAACTATTGTTTTTTTggtc
ttttgaaaaagaattttaccCAACCCAAGACATTATAATATGTATAAAAT
TTATATAAACGAAACAACATGTTGTGGAGATTTAGTATATTTACATATAT
ATATTATAGCTTTATTAGTATAAATCAAAGTAtccaattttcgaattttt
accaaatttttagAACCAAATAACCACGAAATTGTTATGAAAGATTATTT
ATCAAGATATCATAGATATTTATGTGAGAATTTACAGAAGAAACTTTATT
GTGTCATACACTTTTCTCGACAGATATTTGTTTGAATACATTCCtgtatt
taattttgaaattccgATTCCCTCTGATTGACATGATGCTGTAAACCTAC
AATCATGGAAAATATTtaagacaaaggggatttccctgcggaattttaaa
caccacaaatgattttaagcgctttaaactacagttggaaagtagagttt
taactatgAGTTTCAACATGAGACTatgaccttaggatctcaggatctga
aaactcaaatttgctccaataaggcttggaatatagcctagaagccaccg
aacccctccaaaatcgaaatattcaatgaaagaaagtggaagtgccaAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACACTTTTCTCGACAGATATTTGTTTGAAAAC
ATTCCtgtatttaattttgaaattccgATTCCCTCTGATTGACATGATGC
TGTAAACCTACAATCATGGAAAATATTtaagacaaaggggatttccctgc
gaaattttaaacaccacaaatgattttaagcgctttaaactacagttgga
aagtagagttttaactatgAGTTTCAACATGAGactaggaccttaggatc
tcaggatctgaaaactcaaatttgctccaataaggcttggaatatagcct
agaagccaccgaacccctccaaaatcgaaatattcaatgaaagaaagtgg
aagtgcaaaaatagcaattctcgcccaaaCTTTACATTCTGATAAATGTT
AAAAAACACTTATAAAATACACATCTAAATATATTTCGACCTTGATTGTA
GGTCGGATGAAGTAGTATAATACatcattttttgttcattttctctCCAA
CTGTCAATAAACCCcaacttttaaaaattgatatgctttttttctttttc
agaaaatagagaTAAAAATAATCTTGACTGGTGAAATGTTTTTGCTTTGT
CAAAGGCCTCTAAGGTGAGTGAACGATCGAGATTCCTTCAAAACAAGGTA
ATTTTTTCCATCATGCCACTATTTCATTTCGTATTTAGTATGAACTAAAA
AGTAACGTTATGatgcaatgaaaaaaatatttttgctcttcATAGCAGCA
ATCTTACTATTCACCATATATAAATTGCGAACGAAATATCCTGAAGGCTT
GAATGCCCAGAGACAATATGGCGCTGGTTACGTAGTTACCAAAGATACGC
CAGATGATGAGTTAAGTTTTACGCGTGAGTTGAGTCGTCGGTTTGGAGTC
CGAAATCCTGATCCTGATAATCTTcagaaattgaccaaaaaaggTATCGA
TTTTGAACAGGAGACTGATCCTTTACCGGAATCTACTTAttgtgaaaaag
aaatctttttaacCGTTTTGGTGATCAGCAAACCTGAGAATTTTCAACGA
CGTAGGAACATTAGAGATACTTGGGCTCACAGTTACGaagatgattttca
aaaattgaaagggAAACATCCTTTTCCCAATGGGAAAACCTACTCCACTT
CAGATGTTGTTCGTGTAATTTTTGTTATTGGACAACCGAACGTGGAAGAT
GAAAATTTGAGTTCATCTTTGAAGGAGGAATCTCGACTGAGTAAAGATAT
TGTTTTCGGTAATATGATGGAAAATTACCGAAATTTAACCATGAAAACAA
AACTTGGTTTGAAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTG
AAAACGGATGATGATGTTTTTGTAAATCCAGTGGTGCTTGTGGAATGGTT
AAAGAAAGCACCCAGAAAGAACTTGTATACTGGATGGTGTAATTCTAATT
CACCTGTAGATCGAAAACCAAACAGCAAGTGGTgagttttgaactttttt
aaaTACTGGTTGAAGTGGCGGACGTCGAACTTGGAACCAAGACACTTNGA
TCGAAACCCAAACAGCAAGTGGTGagttttatacttttttaaaaattggc
TGAAGTGGCGGACGTCGAACTTGGAACAAAGACACTCCATTTGCTGTGAT
ATGTAACCTTCTAACATATCATTAGGGACCTTAATTTAATACTTTACCTT
GTATTTATAGAAGGTTTTTGGATAgaattattcatgatattcgtggtgta
atgttttctacggaaatacctcGTCTTTAgacagtagtggcaaatttaaa
ctagacaaaagttgtataaaatttgccactactggcaaaaaccggggtct
ttccgtagaaaatattacgtaatgaatatcatgaattgaaaacTTGATTA
CTGTAATCAGTGGCACTTTACCTTATCGCCTCCAGGACTTTGACTCATCT
TTCAGTATTTTAGGCGTCNTTGAAAATCTAGaagtaccagtggatacccc
ttaaaacctacaaagttgcACTTCGGGCTCTCTTAGccaccaaacttaat
ttaataaTGTTcagttcacttttttacaacctcttaaATGTACTTTATca
taatcataaaaaaaaactaattttgagaatttcactTATCgcaaagtgtt
ataaaattcgaAGTTATCGAAATTTTTAGTTTCTCGGATTTAGAGATTAC
ACAATTGTATTTTagggtcataaaacctatacttttttgGTACCTACATT
TATGGCaggtatgaaaaaaatcattttctttttcatggtTGNTTATTTCC
AATGGAAGATTTGTACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTC
AACCGAGAGATGAAAGGAAACATTTCAACCTTGTTTATAATGGGAAGACT
GAAAATAGCTNCCCCAGAGAAATCTTAAGGCCCTCAAAGTTCTAatttag
gttttaaggtgtattttGATTCTAACATACAgtcttgaaaatatttaggt
ccCAATGATCTTATTGCAACATTAGTtactttgcagtgaatcactgttca
aaatttgagaccaaaaggacTATTATATAAAAAGCTTNAAACTGGGCAAA
CAAGCTAGATATGCATTGGTGAATTGTTGATCCTCTTCACTCACTCAATC
GGGTTGGATGTAataattttaaggatttttatgTATCATAGATATTTAAT
TTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00057451TCONS_00057451Clytia hemisphaericatranscript
TCONS_00057452TCONS_00057452Clytia hemisphaericatranscript
TCONS_00057453TCONS_00057453Clytia hemisphaericatranscript
TCONS_00057454TCONS_00057454Clytia hemisphaericatranscript
TCONS_00057455TCONS_00057455Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00057451-proteinTCONS_00057451-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:37882..44534 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83	4.26	4.36	3.73	14.74	11.68	15.23	16.68	10.95	10.29	12.49	9.36	8.51	7.89	7.69	7.63	13.64	12.87	7.11	8.57	12.43	12.84	27.72	23.89	10.45	12.36	7.52	7.86	21.47	22.76