TCONS_00004372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004372
Unique NameTCONS_00004372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004372 ID=TCONS_00004372|Name=TCONS_00004372|organism=Clytia hemisphaerica|type=transcript|length=2653bp
ggaaaaaaaagttaaagaacataaaaaaataaacaaaaaaagacagaaaa
aaGTAAACTGTTATTGCAAAACAGAacaattatgatttttttgatatgCT
CCATCAAATTGGTGGTGATACTAATGTTCCTTAGATTTTCAACCGCGTCC
AAGGTTAATTCTGAGATGAAGTTGGTGGATTATATCCTTGCGAATTACAG
TAAACAAGCCCGACCTGTGATCAATCCACGACATAGTATAAATGTGACTT
TTGGCATTGAAATCGTGCATCTTATCAAAGTTGATGATAGAAATCAAATG
TTGACCACAAAGATATGGGTTCGACAGcaaTGGTTGAATGAACTTCTGAA
GTGGGATTCATCCAAATGGTCAGGGACAACTGAAGTACAAATTGATGGAC
AACTTGTTTGGGTACCAGACATTGTCCTTTACAATAATGCGGACAGTGAA
TTCAGTGGTGGTGTAGAGAAATACAAAACTCGCATCATACAATATAGCGA
TGGAACATCTTTTTGGCTGGCACCTGCTACTTTTACAAGCACGTGCAGTA
TTGATATCAAaTATTTTCCATTCGACAAACAAGAATGTCATTTGAAATTT
GGTTCTTGGACTTTCGATATTGCTGGTATCAATTTACTCAAGGATAATCG
TCCATTGATTACTGACCAGTATTCTGCGTCCAGTGAATGGGATTTAATCA
AAGCTGAGAAACTCCGACATGTTGTCAAATACCAGTGTTGCCCAGAGCCT
TATGTTGATATAACATTCAATTTAGTGTTATTACGGAAACCATTATATTT
CGTGTTCAACGTTATAGCACCTTGCTTGGTTTTAGTTATGACtgtatttt
ttggtttttttctaCCCCCTGAAAGTGGAGAACGCATATCTTTGACCATC
ACTATTTTGCTTGCTGTTGCCGTGTTTCTCCAGTTGATATCCGACGCATT
ACCTCGCAACTCGAATAGTGTTCCAATGCTAGCCGTCTTCTATATGGCGA
TTATGGCTGAAAGTGCATTTAGCCTGATAACTACGTGTATTGTCTTGGTT
ATTCATTACCGGTCTAGTGAAAGAGGTGCAGCACCTATGCCGAAGTGGGT
ACGCAGTTTCTTTCTTGGTACATGTGCAAAATTTTTCGGTATCCATGGTT
ACTATGATGAACTTGAGACAATGCAGACAGAAACCAGGTTAGGCGAGGAT
GCGAATAAAAACCACTCCTCCGCTTATGATAATGGTTTCTACATGTCAGA
TGAATACAATGACCTTCAGAAAAGCAATCCAAATTCAACCCTTCAGACAA
ATAATTTTAGCGGGACGCTTGATGTGATTTTAAAGGAAattcaaattata
acaaaagGAATGTTAAGCAGTCATCAGAAAAGTGAACTGCAAGAAGACTG
GAGGCTACTCGCTCGAGTACTGGATCGTTTGTTTTTCTGGTTGTTCTTGG
TTACAGTGGTCTCCTCGGCTCTCGGCATTTTGGTACCTGTTTATCTTATA
CATCATGGATAAAAGTACAAAACTACTTTCCGATTTTTTTTCACGAATAT
CCTTATGGAGTACGTTGTTATAAGAAAAAGCATGTAGAGGCGAAGTTCGG
ACCCCTTGGAGAGTGCAGCAATACACCCCTCAAACTCGAACCAACCAGCT
GTTGATTTGCTCGAGGAAATGGCTGTGGGGAAACATGATGGACAAGAAGT
ATGGAGACAGTAAAATGTACAATGAACTGGATAGAATCTTCTTTCAGATT
AACGTCTTAAAGTTTGATTTGTAACTTTGTAACTAGCGCCCCATTATGAA
AGCAGACAAGAAAAACACGAGAAAAGACTAGGCCAAGACTACAGACTAAG
AGTCCTGCAACCGACAAAAGTAAacaattagaaaacgaaagtgaaggTAG
TCGTCAAATATTGACACCAGCatccatcagtaaaatccaaaagTGGCTCT
GTCTACGACCCCCGTCCCActtgaaaatttggccaaaatttcgtccccgt
tggaaagatatctcCCAACAAGTTCAGTCCCACTGACAAATGACTTCGAT
TTCATCCCTATTCGAAATCCAATGTAAAAGAAGATGTTGTACACCGAAAC
CATCCTACAGAATTTCGTTAGCTAGGAACAGTAGAATTTCTAACCACATT
tagatttcgatagaaatattccatggggctgtgagacagggttgtaacAT
TAACAGTCAAtagtagattttatttttgcattGCATAATTTCTTTTTAAC
CATCATCATTAATTTTTCTCCGCTAGCAGAGATAATATATCATCACTGTA
CAAAACACTTGCAAAGGTTCCAaagtcaaaaagattttagaagaaaaaaa
tctaaaaattgtaTGACAGTGTAAATTATACCTtaataaaaagtaatttt
tacACAATTTTAGTATGAAATAATTATccattaaataaaataaaatatat
agtcGTTATTTGCATTATAATGTATATTGTAATGTatatataataaataa
taaaattttaatatcttaaaaggGCGTCATTTTTGGGGGACCAAGGGTCT
TTCTTCTTTCATCACGTCGTTTGGATCTTTTGGAAGTTATGGATTTTTCT
TTCGTCTTTGTACCATTTTCCAAGTTTTCCCTTCTGTGGGTAATCGTTAA
TAG
Run BLAST on NCBI

protein sequence of TCONS_00004372-protein

>TCONS_00004372-protein ID=TCONS_00004372-protein|Name=TCONS_00004372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MIFLICSIKLVVILMFLRFSTASKVNSEMKLVDYILANYSKQARPVINPR
HSINVTFGIEIVHLIKVDDRNQMLTTKIWVRQQWLNELLKWDSSKWSGTT
EVQIDGQLVWVPDIVLYNNADSEFSGGVEKYKTRIIQYSDGTSFWLAPAT
FTSTCSIDIKYFPFDKQECHLKFGSWTFDIAGINLLKDNRPLITDQYSAS
SEWDLIKAEKLRHVVKYQCCPEPYVDITFNLVLLRKPLYFVFNVIAPCLV
LVMTVFFGFFLPPESGERISLTITILLAVAVFLQLISDALPRNSNSVPML
AVFYMAIMAESAFSLITTCIVLVIHYRSSERGAAPMPKWVRSFFLGTCAK
FFGIHGYYDELETMQTETRLGEDANKNHSSAYDNGFYMSDEYNDLQKSNP
NSTLQTNNFSGTLDVILKEIQIITKGMLSSHQKSELQEDWRLLARVLDRL
FFWLFLVTVVSSALGILVPVYLIHHG
Run BLAST on NCBI

transcript from alignment at sc0000044:609489..615443+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004372 ID=TCONS_00004372|Name=TCONS_00004372|organism=Clytia hemisphaerica|type=transcript|length=5955bp|location=Sequence derived from alignment at sc0000044:609489..615443+ (Clytia hemisphaerica)
ggaaaaaaaagttaaagaacataaaaaaataaacaaaaaaagacagaaaa
aaGTAAACTGTTATTGCAAAACAGAacaattatgatttttttgatatgCT
CCATCAAATTGGTGGTGATACTAATGTTCCTTAGATTTTCAACCGGTGAG
TCTcctttgttttaaaaatatattgttcTAGTGAGTCTATCGATCTATCG
ATTTTCTCTAAATAAATCTTCAgctttaaagaaaaagaaagtggaCTAGT
CTATTTTAGCCTGTACCAACCCGCTCAAGGGCATTTTTTatattgtgaaa
aaaattgccgttatCTTTTCGGCTAGCGAAGAAGAGTTTGATACAGTCTA
AGCCTATTTATACGTTCCCAAATTTTACTGCGCATTTCTTCTTACCGATC
CAAATTTAGAttctaaacaaaaattattggaTATTCGATTACTTTTGCTC
ATTTTCTTCCCTTTGTAGTATCCAAGGATGCAATCTTACTTCTCCTTTTC
TAGCGTCCAAGGTTAATTCTGAGATGAAGTTGGTGGATTATATCCTTGCG
AATTACAGTAAACAAGCCCGACCTGTGATCAATCCACGACATAGTATAAA
TGTGACTTTTGGCATTGAAATCGTGCATCTTATCAAAGTTGTAAGTATAA
AAACTGGGATAGTTCCAGTGACTGGTTTGTTCATACGTTATTATATAAAG
GGTAATTGTTTGTTAActtcgtttatgagagtttcttgttgacagttACT
TTTAATATTATTGAATATCGGAGCGTAtggaatagtagaacgtcattTAT
GAGTGTTTCTTTTTGACAGTAACTTTTAATATTATTGAATAtcggagcgt
atcgaatagtaaaacgtcgtttatgagagttgcTTTTTGACGGTAACTTT
CAATATTATAGAATAATGGGAGCGTATGGAATAGTAGAATgtcaaattaa
ttaattaacgCGATAGACTTTTTTCGTTAAAGAATGAGTAGTTGCCTAGA
ACTGGAACGCGTGGAGAAAATCTACGCTATGTTTTAACGGTTTCGTGTTT
ATTATACAACCGTTACAGTTTTGTAGAGGTTTCACACTACCTTATGGCGT
CTacgaatttttgaattttttgtaaattttcaaaattctttgaaaatatt
taaacaaGTTCAATGTTGCAACCTGATCCTGATCCCAAGCTCTTTGTTTA
AATATTATAGCgttcttttatgttttcttattgacaaaaactttttattt
attattgtaGGATGATAGAAATCAAATGTTGACCACAAAGATATGGGTTC
GACAGGTTGGTACAACCCAACCTcgtgcccgtgtatcccaggctttattt
acactaGTGACGGACGCCATTATCTAATTCTAGCGTCATATcgttaaagc
ataaaaaagctgtgataatgcgcagggaatGAGGTTGGGTACAACCCTAC
AGATCTAATACAttaaaggaaaaaattatagcggaaatttatttttgcgg
ATGGTAATTTACCTAAAATCCACCGAatccgccaatttttttctaccaaa
atttccttcttttaaaattttaaggtGAAACTTTGAATTGCACTGAATGT
TGGAAGTTTAACATGAAAGTTGTAAAAACGGTACACTCATAGGAACTAAA
ATGTTTGCTTGAACAAGgctgaagattcctctctagcacTTTGGTGTTTA
AACTCAATAGTGGGCGGCTCTGGTACAAGAATAATTTTTAACAGCTAATA
GTTCCAAtagcaatttttcaaaaaagtatttcttgCAACTGAGATTACAG
TTCAATGTGATTTCCTAAGGGTTGGGGGACGTACGAGGGTACTGggcacc
gaaataccgacagttTTTCACAAAATCACCGCAATACCGATACATTTTTT
ACGAAATACCGACACCGacactttttcatgtttttcaaaattctaatatG
AGATAAAAGCATACGAGGGATTTCTGAGATAACAAGCTCTTGTTTTAGCA
CCGGTTTTCCGACGAAAATTACCGTATCACCAATTGAAAATGTAACATTT
TCCGTTATCACCGAAAAGCATCtcaaacaccgaaataccgacacatTTTT
TGTTGATCACCAAAATACCGACGCAAAAAAGGTCAATACTGACACACCGA
CAAACTGGTACGCCCATGAACTTTTTCGACTTAATTTCTCATTGGATCAG
TGTCATAGAGGTACGACTTAGACAAATAAATGTTTGTAAAAATGTGTCCT
ACAcaggaaatttcatttttagcaaTGGTTGAATGAACTTCTGAAGTGGG
ATTCATCCAAATGGTCAGGGACAACTGAAGTACAAATTGATGGACAACTT
GTTTGGGTACCAGACATTGTCCTTTACAATAAGTAAGTGAGATATTCTTG
AAGAAAGCTCGTTCCTCTAGAGAGCTACAATTCATTGCATTGTGCGAATT
TCCGATTAGTGGAaatattttggattttcaaCATGGAAGTAAAATATAAG
GCGGACTATAAACTTATTATTAATTAAACCTTCATTCTTTACTGCTCAAC
TGCGCTGGGAATTTTTTACCAAATGTTAAAGATGGCACTCTAGATATGAA
TCTCAAAAAAATTCTCGATTTGCGTAAAGTTGGCCCTCTCAGCAATTAGC
TTAAATGCGTGAATATGGGTCTGCGTGAATGcgctaaaatggaaaaaaaa
aacgtgtgaaTTGGTGAATTTTCTATATTTTGTGTTTGACtacgtgaatt
tttctctttcttccATCGATTATGTGCAAATTTCCCGTTTTTTACGAAAA
GAATTTccgatattttgaaaattgggtttgcgtgaaACTCGGGAAAAATg
cgtgaattttgaaaaaattgcgtCATTGCGTGTGTATTTAGGATCCTCTG
GGGGAGTGGCTCGTAAAGGATCACCtggaacgtttgcttccataatggtg
gaaattacTTTGCTTAACAAAACGAACTTGAAATCTTTATTATTACATCT
TAATAAATTCCTGTACTTCTTCTTTAAGTGCGGACAGTGAATTCAGTGGT
GGTGTAGAGAAATACAAAACTCGCATCATACAATATAGCGATGGAACATC
TTTTTGGCTGGCACCTGCTACTTTTACAAGCACGTGCAGTATTGATATCA
AGTAGGTCAAGTTATACAGttgacgttctctaattcgatttcaaggggaa
ttgaatTTCCATAGAATAAAGGAGCGTATCGACTGGTAAAGAGTTAGAGA
GTGTTAACTGAATTACCCTTTCCTCCTGGCACAGAGACCCGATGGAGCCT
CCCTCCCCTTAATAGGAGGATGTGCTAAAAAGTCGTCCCAGGTgaaaaaa
taccctgaaattttaCTTTGACTGGATAAGTGCCCTATGATTTCATGTCC
ATTGGAAAATTAATAGAAATTGAAATGAGATCGCGCTCCGAAGCGATTCC
CACAGGCGTCATGATAAGGTTTTTTTAGTAGCGTAGGATACATGTATTAG
TATTTTACGTTTGTTGCACTCGCACTACGCTTAGATAATAGCGaaattat
gtatcggagatattctacggctacggttgcggggctgcccgtacgggtcg
ttgtctactttgctctgttcgggaaaaacaccaaaataccgtataagcaa
agtcgacataatgacgtacgtcaaatatcgaatttgcttttacccgccat
tacttgccttactcgccatttccctcgccactttagccgtagccgtagag
aattccagatacataatctcgctagtAGTTACACCCCTATCTCAGAGTAT
TTTGACTACCATATTTTGGTTTTTCGGTAATAATAggtctttattatttt
tttcactttcagaTATTTTCCATTCGACAAACAAGAATGTCATTTGAAAT
TTGGTTCTTGGACTTTCGATATTGCTGGTATCAATTTACTCAAGGATAAT
CGTCCATTGATTACTGACCAGTATTCTGCGTCCAGTGAATGGGATTTAAT
CAAAGCTGAGAAACTCCGACATGTTGTCAAATACCAGTGTTGCCCAGAGC
CTTATGTTGATATAACATTCAATTTAGTGTTATTACGGAAACCATTATAT
TTCGTGTTCAACGTTATAGCACCTTGCTTGGTTTTAGTTATGACtgtatt
ttttggtttttttctaCCCCCTGAAAGTGGAGAACGCATATCTTTGACCA
TCACTATTTTGCTTGCTGTTGCCGTGTTTCTCCAGTTGATATCCGACGCA
TTACCTCGCAACTCGAATAGTGTTCCAATGCTAGCCGTCTTCTATATGGC
GATTATGGCTGAAAGTGCATTTAGCCTGATAACTACGTGTATTGTCTTGG
TTATTCATTACCGGTCTAGTGAAAGAGGTGCAGCACCTATGCCGAAGTGG
GTACGCAGTTTCTTTCTTGGTACATGTGCAAAATTTTTCGGTATCCATGG
TTACTATGATGAACTTGAGACAATGCAGACAGAAACCAGGTTAGGCGAGG
ATGCGAATAAAAACCACTCCTCCGCTTATGATAATGGTTTCTACATGTCA
GATGAATACAATGACCTTCAGAAAAGCAATCCAAATTCAACCCTTCAGAC
AAATAATTTTAGCGGGACGCTTGATGTGATTTTAAAGGAAattcaaatta
taacaaaagGAATGTTAAGCAGTCATCAGAAAAGTGAACTGCAAGAAGAC
TGGAGGCTACTCGCTCGAGTACTGGATCGTTTGTTTTTCTGGTTGTTCTT
GGTTACAGTGGTCTCCTCGGCTCTCGGCATTTTGGTACCTGTTTATCTTA
TACATCATGGATAAAAGTACAAAACTACTTTCCGATTTTTTTTCACGAAT
ATCCTTATGGAGTACGTTGTTATAAGAAAAAGCATGTAGAGGCGAAGTTC
GGACCCCTTGGAGAGTGCAGCAATACACCCCTCAAACTCGAACCAACCAG
CTGTTGATTTGCTCGAGGAAATGGCTGTGGGGAAACATGATGGACAAGAA
GTATGGAGACAGTAAAATGTACAATGAACTGGATAGAATCTTCTTTCAGA
TTAACGTCTTAAAGTTTGATTTGTAACTTTGTAACTAGCGCCCCATTATG
AAAGCAGACAAGAAAAACACGAGAAAAGACTAGGCCAAGACTACAGACTA
AGAGTCCTGCAACCGACAAAAGTAAacaattagaaaacgaaagtgaaggT
AGTCGTCAAATATTGACACCAGCatccatcagtaaaatccaaaagTGGCT
CTGTCTACGACCCCCGTCCCActtgaaaatttggccaaaatttcgtcccc
gttggaaagatatctcCCAACAAGTTCAGTCCCACTGACAAATGACTTCG
ATTTCATCCCTATTCGAAATCCAATGTAAAAGAAGATGTTGTACACCGAA
ACCATCCTACAGAATTTCGTTAGCTAGGAACAGTAGAATTTCTAACCACA
TTtagatttcgatagaaatattccatggggctgtgagacagggttgtaac
ATTAACAGTCAAtagtagattttatttttgcattGCATAATTTCTTTTTA
ACCATCATCATTAATTTTTCTCCGCTAGCAGAGATAATATATCATCACTG
TACAAAACACTTGCAAAGGTTCCAaagtcaaaaagattttagaagaaaaa
aatctaaaaattgtaTGACAGTGTAAATTATACCTtaataaaaagtaatt
tttacACAATTTTAGTATGAAATAATTATccattaaataaaataaaatat
atagtcGTTATTTGCATTATAATGTATATTGTAATGTatatataataaat
aataaaattttaatatcttaaaaggGCGTCATTTTTGGGGGACCAAGGGT
CTTTCTTCTTTCATCACGTCGTTTGGATCTTTTGGAAGTTATGGATTTTT
CTTTCGTCTTTGTACCATTTTCCAAGTTTTCCCTTCTGTGGGTAATCGTT
AATAG

Coding sequence (CDS) from alignment at sc0000044:609489..615443+

>TCONS_00004372 ID=TCONS_00004372|Name=TCONS_00004372|organism=Clytia hemisphaerica|type=CDS|length=8586bp|location=Sequence derived from alignment at sc0000044:609489..615443+ (Clytia hemisphaerica)
atgatttttttgatatgCTCCATCAAATTGGTGGTGATACTAATGTTCCT
TAGATTTTCAACCGCGTCCAAGGTTAATTCTGAGATGAAGTTGGTGGATT
ATATCCTTGCGAATTACAGTAAACAAGCCCGACCTGTGATCAATCCACGA
CATAGTATAAATGTGACTTTTGGCATTGAAATCGTGCATCTTATCAAAGT
TGATGATAGAAATCAAATGTTGACCACAAAGATATGGGTTCGACAGcaaT
GGTTGAATGAACTTCTGAAGTGGGATTCATCCAAATGGTCAGGGACAACT
GAAGTACAAATTGATGGACAACTTGTTTGGGTACCAGACATTGTCCTTTA
CAATAATGCGGACAGTGAATTCAGTGGTGGTGTAGAGAAATACAAAACTC
GCATCATACAATATAGCGATGGAACATCTTTTTGGCTGGCACCTGCTACT
TTTACAAGCACGTGCAGTATTGATATCAAaTATTTTCCATTCGACAAACA
AGAATGTCATTTGAAATTTGGTTCTTGGACTTTCGATATTGCTGGTATCA
ATTTACTCAAGGATAATCGTCCATTGATTACTGACCAGTATTCTGCGTCC
AGTGAATGGGATTTAATCAAAGCTGAGAAACTCCGACATGTTGTCAAATA
CCAGTGTTGCCCAGAGCCTTATGTTGATATAACATTCAATTTAGTGTTAT
TACGGAAACCATTATATTTCGTGTTCAACGTTATAGCACCTTGCTTGGTT
TTAGTTATGACtgtattttttggtttttttctaCCCCCTGAAAGTGGAGA
ACGCATATCTTTGACCATCACTATTTTGCTTGCTGTTGCCGTGTTTCTCC
AGTTGATATCCGACGCATTACCTCGCAACTCGAATAGTGTTCCAATGCTA
GCCGTCTTCTATATGGCGATTATGGCTGAAAGTGCATTTAGCCTGATAAC
TACGTGTATTGTCTTGGTTATTCATTACCGGTCTAGTGAAAGAGGTGCAG
CACCTATGCCGAAGTGGGTACGCAGTTTCTTTCTTGGTACATGTGCAAAA
TTTTTCGGTATCCATGGTTACTATGATGAACTTGAGACAATGCAGACAGA
AACCAGGTTAGGCGAGGATGCGAATAAAAACCACTCCTCCGCTTATGATA
ATGGTTTCTACATGTCAGATGAATACAATGACCTTCAGAAAAGCAATCCA
AATTCAACCCTTCAGACAAATAATTTTAGCGGGACGCTTGATGTGATTTT
AAAGGAAattcaaattataacaaaagGAATGTTAAGCAGTCATCAGAAAA
GTGAACTGCAAGAAGACTGGAGGCTACTCGCTCGAGTACTGGATCGTTTG
TTTTTCTGGTTGTTCTTGGTTACAGTGGTCTCCTCGGCTCTCGGCATTTT
GGTACCTGTTTATCTTATACATCATGGATAAatgatttttttgatatgCT
CCATCAAATTGGTGGTGATACTAATGTTCCTTAGATTTTCAACCGCGTCC
AAGGTTAATTCTGAGATGAAGTTGGTGGATTATATCCTTGCGAATTACAG
TAAACAAGCCCGACCTGTGATCAATCCACGACATAGTATAAATGTGACTT
TTGGCATTGAAATCGTGCATCTTATCAAAGTTGATGATAGAAATCAAATG
TTGACCACAAAGATATGGGTTCGACAGcaaTGGTTGAATGAACTTCTGAA
GTGGGATTCATCCAAATGGTCAGGGACAACTGAAGTACAAATTGATGGAC
AACTTGTTTGGGTACCAGACATTGTCCTTTACAATAATGCGGACAGTGAA
TTCAGTGGTGGTGTAGAGAAATACAAAACTCGCATCATACAATATAGCGA
TGGAACATCTTTTTGGCTGGCACCTGCTACTTTTACAAGCACGTGCAGTA
TTGATATCAAaTATTTTCCATTCGACAAACAAGAATGTCATTTGAAATTT
GGTTCTTGGACTTTCGATATTGCTGGTATCAATTTACTCAAGGATAATCG
TCCATTGATTACTGACCAGTATTCTGCGTCCAGTGAATGGGATTTAATCA
AAGCTGAGAAACTCCGACATGTTGTCAAATACCAGTGTTGCCCAGAGCCT
TATGTTGATATAACATTCAATTTAGTGTTATTACGGAAACCATTATATTT
CGTGTTCAACGTTATAGCACCTTGCTTGGTTTTAGTTATGACtgtatttt
ttggtttttttctaCCCCCTGAAAGTGGAGAACGCATATCTTTGACCATC
ACTATTTTGCTTGCTGTTGCCGTGTTTCTCCAGTTGATATCCGACGCATT
ACCTCGCAACTCGAATAGTGTTCCAATGCTAGCCGTCTTCTATATGGCGA
TTATGGCTGAAAGTGCATTTAGCCTGATAACTACGTGTATTGTCTTGGTT
ATTCATTACCGGTCTAGTGAAAGAGGTGCAGCACCTATGCCGAAGTGGGT
ACGCAGTTTCTTTCTTGGTACATGTGCAAAATTTTTCGGTATCCATGGTT
ACTATGATGAACTTGAGACAATGCAGACAGAAACCAGGTTAGGCGAGGAT
GCGAATAAAAACCACTCCTCCGCTTATGATAATGGTTTCTACATGTCAGA
TGAATACAATGACCTTCAGAAAAGCAATCCAAATTCAACCCTTCAGACAA
ATAATTTTAGCGGGACGCTTGATGTGATTTTAAAGGAAattcaaattata
acaaaagGAATGTTAAGCAGTCATCAGAAAAGTGAACTGCAAGAAGACTG
GAGGCTACTCGCTCGAGTACTGGATCGTTTGTTTTTCTGGTTGTTCTTGG
TTACAGTGGTCTCCTCGGCTCTCGGCATTTTGGTACCTGTTTATCTTATA
CATCATGGATAAatgatttttttgatatgCTCCATCAAATTGGTGGTGAT
ACTAATGTTCCTTAGATTTTCAACCGCGTCCAAGGTTAATTCTGAGATGA
AGTTGGTGGATTATATCCTTGCGAATTACAGTAAACAAGCCCGACCTGTG
ATCAATCCACGACATAGTATAAATGTGACTTTTGGCATTGAAATCGTGCA
TCTTATCAAAGTTGATGATAGAAATCAAATGTTGACCACAAAGATATGGG
TTCGACAGcaaTGGTTGAATGAACTTCTGAAGTGGGATTCATCCAAATGG
TCAGGGACAACTGAAGTACAAATTGATGGACAACTTGTTTGGGTACCAGA
CATTGTCCTTTACAATAATGCGGACAGTGAATTCAGTGGTGGTGTAGAGA
AATACAAAACTCGCATCATACAATATAGCGATGGAACATCTTTTTGGCTG
GCACCTGCTACTTTTACAAGCACGTGCAGTATTGATATCAAaTATTTTCC
ATTCGACAAACAAGAATGTCATTTGAAATTTGGTTCTTGGACTTTCGATA
TTGCTGGTATCAATTTACTCAAGGATAATCGTCCATTGATTACTGACCAG
TATTCTGCGTCCAGTGAATGGGATTTAATCAAAGCTGAGAAACTCCGACA
TGTTGTCAAATACCAGTGTTGCCCAGAGCCTTATGTTGATATAACATTCA
ATTTAGTGTTATTACGGAAACCATTATATTTCGTGTTCAACGTTATAGCA
CCTTGCTTGGTTTTAGTTATGACtgtattttttggtttttttctaCCCCC
TGAAAGTGGAGAACGCATATCTTTGACCATCACTATTTTGCTTGCTGTTG
CCGTGTTTCTCCAGTTGATATCCGACGCATTACCTCGCAACTCGAATAGT
GTTCCAATGCTAGCCGTCTTCTATATGGCGATTATGGCTGAAAGTGCATT
TAGCCTGATAACTACGTGTATTGTCTTGGTTATTCATTACCGGTCTAGTG
AAAGAGGTGCAGCACCTATGCCGAAGTGGGTACGCAGTTTCTTTCTTGGT
ACATGTGCAAAATTTTTCGGTATCCATGGTTACTATGATGAACTTGAGAC
AATGCAGACAGAAACCAGGTTAGGCGAGGATGCGAATAAAAACCACTCCT
CCGCTTATGATAATGGTTTCTACATGTCAGATGAATACAATGACCTTCAG
AAAAGCAATCCAAATTCAACCCTTCAGACAAATAATTTTAGCGGGACGCT
TGATGTGATTTTAAAGGAAattcaaattataacaaaagGAATGTTAAGCA
GTCATCAGAAAAGTGAACTGCAAGAAGACTGGAGGCTACTCGCTCGAGTA
CTGGATCGTTTGTTTTTCTGGTTGTTCTTGGTTACAGTGGTCTCCTCGGC
TCTCGGCATTTTGGTACCTGTTTATCTTATACATCATGGATAAatgattt
ttttgatatgCTCCATCAAATTGGTGGTGATACTAATGTTCCTTAGATTT
TCAACCGCGTCCAAGGTTAATTCTGAGATGAAGTTGGTGGATTATATCCT
TGCGAATTACAGTAAACAAGCCCGACCTGTGATCAATCCACGACATAGTA
TAAATGTGACTTTTGGCATTGAAATCGTGCATCTTATCAAAGTTGATGAT
AGAAATCAAATGTTGACCACAAAGATATGGGTTCGACAGcaaTGGTTGAA
TGAACTTCTGAAGTGGGATTCATCCAAATGGTCAGGGACAACTGAAGTAC
AAATTGATGGACAACTTGTTTGGGTACCAGACATTGTCCTTTACAATAAT
GCGGACAGTGAATTCAGTGGTGGTGTAGAGAAATACAAAACTCGCATCAT
ACAATATAGCGATGGAACATCTTTTTGGCTGGCACCTGCTACTTTTACAA
GCACGTGCAGTATTGATATCAAaTATTTTCCATTCGACAAACAAGAATGT
CATTTGAAATTTGGTTCTTGGACTTTCGATATTGCTGGTATCAATTTACT
CAAGGATAATCGTCCATTGATTACTGACCAGTATTCTGCGTCCAGTGAAT
GGGATTTAATCAAAGCTGAGAAACTCCGACATGTTGTCAAATACCAGTGT
TGCCCAGAGCCTTATGTTGATATAACATTCAATTTAGTGTTATTACGGAA
ACCATTATATTTCGTGTTCAACGTTATAGCACCTTGCTTGGTTTTAGTTA
TGACtgtattttttggtttttttctaCCCCCTGAAAGTGGAGAACGCATA
TCTTTGACCATCACTATTTTGCTTGCTGTTGCCGTGTTTCTCCAGTTGAT
ATCCGACGCATTACCTCGCAACTCGAATAGTGTTCCAATGCTAGCCGTCT
TCTATATGGCGATTATGGCTGAAAGTGCATTTAGCCTGATAACTACGTGT
ATTGTCTTGGTTATTCATTACCGGTCTAGTGAAAGAGGTGCAGCACCTAT
GCCGAAGTGGGTACGCAGTTTCTTTCTTGGTACATGTGCAAAATTTTTCG
GTATCCATGGTTACTATGATGAACTTGAGACAATGCAGACAGAAACCAGG
TTAGGCGAGGATGCGAATAAAAACCACTCCTCCGCTTATGATAATGGTTT
CTACATGTCAGATGAATACAATGACCTTCAGAAAAGCAATCCAAATTCAA
CCCTTCAGACAAATAATTTTAGCGGGACGCTTGATGTGATTTTAAAGGAA
attcaaattataacaaaagGAATGTTAAGCAGTCATCAGAAAAGTGAACT
GCAAGAAGACTGGAGGCTACTCGCTCGAGTACTGGATCGTTTGTTTTTCT
GGTTGTTCTTGGTTACAGTGGTCTCCTCGGCTCTCGGCATTTTGGTACCT
GTTTATCTTATACATCATGGATAAatgatttttttgatatgCTCCATCAA
ATTGGTGGTGATACTAATGTTCCTTAGATTTTCAACCGCGTCCAAGGTTA
ATTCTGAGATGAAGTTGGTGGATTATATCCTTGCGAATTACAGTAAACAA
GCCCGACCTGTGATCAATCCACGACATAGTATAAATGTGACTTTTGGCAT
TGAAATCGTGCATCTTATCAAAGTTGATGATAGAAATCAAATGTTGACCA
CAAAGATATGGGTTCGACAGcaaTGGTTGAATGAACTTCTGAAGTGGGAT
TCATCCAAATGGTCAGGGACAACTGAAGTACAAATTGATGGACAACTTGT
TTGGGTACCAGACATTGTCCTTTACAATAATGCGGACAGTGAATTCAGTG
GTGGTGTAGAGAAATACAAAACTCGCATCATACAATATAGCGATGGAACA
TCTTTTTGGCTGGCACCTGCTACTTTTACAAGCACGTGCAGTATTGATAT
CAAaTATTTTCCATTCGACAAACAAGAATGTCATTTGAAATTTGGTTCTT
GGACTTTCGATATTGCTGGTATCAATTTACTCAAGGATAATCGTCCATTG
ATTACTGACCAGTATTCTGCGTCCAGTGAATGGGATTTAATCAAAGCTGA
GAAACTCCGACATGTTGTCAAATACCAGTGTTGCCCAGAGCCTTATGTTG
ATATAACATTCAATTTAGTGTTATTACGGAAACCATTATATTTCGTGTTC
AACGTTATAGCACCTTGCTTGGTTTTAGTTATGACtgtattttttggttt
ttttctaCCCCCTGAAAGTGGAGAACGCATATCTTTGACCATCACTATTT
TGCTTGCTGTTGCCGTGTTTCTCCAGTTGATATCCGACGCATTACCTCGC
AACTCGAATAGTGTTCCAATGCTAGCCGTCTTCTATATGGCGATTATGGC
TGAAAGTGCATTTAGCCTGATAACTACGTGTATTGTCTTGGTTATTCATT
ACCGGTCTAGTGAAAGAGGTGCAGCACCTATGCCGAAGTGGGTACGCAGT
TTCTTTCTTGGTACATGTGCAAAATTTTTCGGTATCCATGGTTACTATGA
TGAACTTGAGACAATGCAGACAGAAACCAGGTTAGGCGAGGATGCGAATA
AAAACCACTCCTCCGCTTATGATAATGGTTTCTACATGTCAGATGAATAC
AATGACCTTCAGAAAAGCAATCCAAATTCAACCCTTCAGACAAATAATTT
TAGCGGGACGCTTGATGTGATTTTAAAGGAAattcaaattataacaaaag
GAATGTTAAGCAGTCATCAGAAAAGTGAACTGCAAGAAGACTGGAGGCTA
CTCGCTCGAGTACTGGATCGTTTGTTTTTCTGGTTGTTCTTGGTTACAGT
GGTCTCCTCGGCTCTCGGCATTTTGGTACCTGTTTATCTTATACATCATG
GATAAatgatttttttgatatgCTCCATCAAATTGGTGGTGATACTAATG
TTCCTTAGATTTTCAACCGCGTCCAAGGTTAATTCTGAGATGAAGTTGGT
GGATTATATCCTTGCGAATTACAGTAAACAAGCCCGACCTGTGATCAATC
CACGACATAGTATAAATGTGACTTTTGGCATTGAAATCGTGCATCTTATC
AAAGTTGATGATAGAAATCAAATGTTGACCACAAAGATATGGGTTCGACA
GcaaTGGTTGAATGAACTTCTGAAGTGGGATTCATCCAAATGGTCAGGGA
CAACTGAAGTACAAATTGATGGACAACTTGTTTGGGTACCAGACATTGTC
CTTTACAATAATGCGGACAGTGAATTCAGTGGTGGTGTAGAGAAATACAA
AACTCGCATCATACAATATAGCGATGGAACATCTTTTTGGCTGGCACCTG
CTACTTTTACAAGCACGTGCAGTATTGATATCAAaTATTTTCCATTCGAC
AAACAAGAATGTCATTTGAAATTTGGTTCTTGGACTTTCGATATTGCTGG
TATCAATTTACTCAAGGATAATCGTCCATTGATTACTGACCAGTATTCTG
CGTCCAGTGAATGGGATTTAATCAAAGCTGAGAAACTCCGACATGTTGTC
AAATACCAGTGTTGCCCAGAGCCTTATGTTGATATAACATTCAATTTAGT
GTTATTACGGAAACCATTATATTTCGTGTTCAACGTTATAGCACCTTGCT
TGGTTTTAGTTATGACtgtattttttggtttttttctaCCCCCTGAAAGT
GGAGAACGCATATCTTTGACCATCACTATTTTGCTTGCTGTTGCCGTGTT
TCTCCAGTTGATATCCGACGCATTACCTCGCAACTCGAATAGTGTTCCAA
TGCTAGCCGTCTTCTATATGGCGATTATGGCTGAAAGTGCATTTAGCCTG
ATAACTACGTGTATTGTCTTGGTTATTCATTACCGGTCTAGTGAAAGAGG
TGCAGCACCTATGCCGAAGTGGGTACGCAGTTTCTTTCTTGGTACATGTG
CAAAATTTTTCGGTATCCATGGTTACTATGATGAACTTGAGACAATGCAG
ACAGAAACCAGGTTAGGCGAGGATGCGAATAAAAACCACTCCTCCGCTTA
TGATAATGGTTTCTACATGTCAGATGAATACAATGACCTTCAGAAAAGCA
ATCCAAATTCAACCCTTCAGACAAATAATTTTAGCGGGACGCTTGATGTG
ATTTTAAAGGAAattcaaattataacaaaagGAATGTTAAGCAGTCATCA
GAAAAGTGAACTGCAAGAAGACTGGAGGCTACTCGCTCGAGTACTGGATC
GTTTGTTTTTCTGGTTGTTCTTGGTTACAGTGGTCTCCTCGGCTCTCGGC
ATTTTGGTACCTGTTTATCTTATACATCATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002446XLOC_002446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004372-proteinTCONS_00004372-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004372-exon-sc0000044-1491911889:609489..609633TCONS_00004372-exon-sc0000044-1491911889:609489..609633Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:609489..609633TCONS_00004372-exon-sc0000044-1510915933:609489..609633Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:609489..609633TCONS_00004372-exon-sc0000044-1575043694:609489..609633Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1491911889:609992..610128TCONS_00004372-exon-sc0000044-1491911889:609992..610128Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:609992..610128TCONS_00004372-exon-sc0000044-1510915933:609992..610128Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:609992..610128TCONS_00004372-exon-sc0000044-1575043694:609992..610128Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1491911889:610749..610793TCONS_00004372-exon-sc0000044-1491911889:610749..610793Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:610749..610793TCONS_00004372-exon-sc0000044-1510915933:610749..610793Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:610749..610793TCONS_00004372-exon-sc0000044-1575043694:610749..610793Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1491911889:611761..611870TCONS_00004372-exon-sc0000044-1491911889:611761..611870Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:611761..611870TCONS_00004372-exon-sc0000044-1510915933:611761..611870Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:611761..611870TCONS_00004372-exon-sc0000044-1575043694:611761..611870Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1491911889:612517..612639TCONS_00004372-exon-sc0000044-1491911889:612517..612639Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:612517..612639TCONS_00004372-exon-sc0000044-1510915933:612517..612639Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:612517..612639TCONS_00004372-exon-sc0000044-1575043694:612517..612639Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1491911889:613351..615443TCONS_00004372-exon-sc0000044-1491911889:613351..615443Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1510915933:613351..615443TCONS_00004372-exon-sc0000044-1510915933:613351..615443Clytia hemisphaericaexon
TCONS_00004372-exon-sc0000044-1575043694:613351..615443TCONS_00004372-exon-sc0000044-1575043694:613351..615443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:609489..615443 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106273	0.12022	0.236615	0.26578	0	0.0546382	0.737642	0.591842	0.162397	0.251593	0.177385	0.087276	0.387778	0.386206	0.0880355	0.0442529	0.636178	0.646676	1.7653	2.06896	0.682728	0.588578	0.174732	0.18758	0.356935	0.331398	0.240596	0.318642	0.0199754	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR002394Nicotinic_acetylcholine_rcpt
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0045211postsynaptic membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0022848acetylcholine-gated cation-selective channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045211 postsynaptic membrane
molecular_function GO:0022848 acetylcholine-gated cation-selective channel activity
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00004372 vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 278.1 bits (710), Expect = 1.018e-82
Identity = 152/479 (31.73%), Postives = 259/479 (54.07%), Query Frame = 1 
Query:  145 ASKVNSEMKLVDYILANYSKQARPVINPRHSINVTFGIEIVHLIKVDDRNQMLTTKIWVRQQWLNELLKWDSSKWSGTTEVQIDGQLVWVPDIVLYNNADSEFSGGVEKYKTRIIQYSDGTSFWLAPATFTSTCSIDIKYFPFDKQECHLKFGSWTFDIAGINLLKDNRPLITDQYSASSEWDLIKAEKLRHVVKYQCCPEPYVDITFNLVLLRKPLYFVFNVIAPCLVLVMTVFFGFFLPPESGERISLTITILLAVAVFLQLISDALPRNSNSVPMLAVFYMAIMAESAFSLITTCIVLVIHYRSSERGAAPMPKWVRSFFL----------------GTCAKFFGIHGYYDELETMQTETRLGEDANKNHSSAYDNGFYMSDEYNDLQKSNPNSTLQTNNFSGTLDVIL-------------KEIQIITKGMLSSHQKSELQEDWRLLARVLDRLFFWLF-LVTVVSSALGILVPV 1491
            A    +E +L + +  +Y++  RPV N    + + F + +  L+KVD+ NQ++ T +W++Q W +  LKW+ S + G   +++  Q +W PDIVLYNNA  +F   V+     +++Y+ G   W+ PA F S+C ID+ YFPFD Q C +KFGSW++D A I+L+     +    Y  S EW +IKA   +H +KY CC E Y DIT++L + R PL++  N+I PCL++       F+LP + GE+++L I++LL++ VFL +I++ +P  S  +P++  + +  M     S++ T  VL +HYR+       MP WV++ FL                G   K   ++G   EL  +   +R      K      D G      +  ++ SN ++ L  ++ S ++D +L             + ++ I + M + ++  E+Q+DW+ +A V+DR+F W+F LV ++ +A   L P+
Sbjct:   29 ARASEAEHRLFERLFEDYNEIIRPVANVSDPVIIHFEVSMSQLVKVDEVNQIMETNLWLKQIWNDYKLKWNPSDYGGAEFMRVPAQKIWKPDIVLYNNAVGDFQ--VDDKTKALLKYT-GEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIGSSMNLKDYWESGEWAIIKAPGYKHDIKYNCCEEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYRTPTTHT--MPSWVKTVFLNLLPRVMFMTRPTSNEGNAQKPRPLYG--AELSNLNCFSRAESKGCKEGYPCQD-GMCGYCHHRRIKISNFSANLTRSSSSESVDAVLSLSALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWVFTLVCILGTAGLFLQPL 499
The following BLAST results are available for this feature:
BLAST of TCONS_00004372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA31.018e-8231.73Neuronal acetylcholine receptor subunit alpha-3 OS... [more]
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