TCONS_00049574 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049574
Unique Name	TCONS_00049574
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1322

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_161:222659..226564+
coding sequence from alignment at scaffold_161:222659..226564+

transcript sequence

>TCONS_00049574 ID=TCONS_00049574|Name=TCONS_00049574|organism=Clytia hemisphaerica|type=transcript|length=1322bp
ccggctttgggatggcaggatcctggatggtttccctaatgAAGCTAGAA
TTGCCAGCAAATcggtttttctcaaatttctggAGTTGTACTTGTCTATT
TGTCAtgaaatattgacaacaaagctctctttaaatataattttgcattt
tactttgatttttcaCAAAGATATATGAAATATTATTGATGTGAGAAAAC
ACCAACAATAAGGATACATTCATTAGACAAAATGGtaaagaaaggaaaag
gaaaacaaaGTGAAGAAGACATAAAGATTCCACCTTCTgacgtttttatt
tttccaaatgGTGATAAGTATGAGGGGAATTTTTGCCAGTTGTCTGACGA
GACCATTTCACGATGTGGAACAGGAAGACATACAACACATGATGGAATTA
TTATGGAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAAGGTAAGATT
GTCCATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATAATATGAT
GCATGGTCAAGGAACCTATGTATTCACTGATAAATCGATCTATGAAGGCC
AATTCAATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACTGATCCATCT
GGTCAAGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAATGGTTTAGA
ATTCAAACTGAACATGTAAAATGAGGGGATAACAAATATTGCCCTGCTTG
TTTTTTCTTCTATAATGTTTCACAGGTAATAGCAATCAATGGCAACAACG
ATGTGTTAAGATTAATAAAATCTATACCAGACCACCGCCTCTGACTGTTA
CCATTTGAATTAGGTCTATTCATTTGGTTCTACAACCTGGCAGAAATATT
CCAGGTGTAGAAATATTGTCTTATATCTGTTATTAGTAGTTGTTAGTTGT
TCTGCTTGGATTATTGCTGTAGGGTGTAATACTGTATTATGATATTGTTT
GTCGGTTTGTTTTATGATGAGATGTATACAACTTTACGGAATGCAAAATG
AGTTGAATTCAGGGCATATTTACCCGGGGCACTAGATTCAAAAACGTCCA
TACGTGCGgtccaaaattaggcctttgaaatcggacccttacagtgcagg
ggAAATTTGGATATATTTTGCGTGTGAGACTAttttaggtgtacaaactt
tcgtgagcagaaacttttgcgatttttagcgaattttaccctttttcgcg
gaagtaataaaaattctttaaaaaggccgttcgcgaaaaattcttgacaa
aatagaaattctgtaaaacttctgaattaaaataaaatgtaaatttatgg
cactttttagcctgttgAAGCC

Run BLAST on NCBI

protein sequence of TCONS_00049574-protein

>TCONS_00049574-protein ID=TCONS_00049574-protein|Name=TCONS_00049574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MVKKGKGKQSEEDIKIPPSDVFIFPNGDKYEGNFCQLSDETISRCGTGRH
TTHDGIIMEGTWENNKLNGKGKIVHPSGACYEGDVLDNMMHGQGTYVFTD
KSIYEGQFNENRLEGEGQLTDPSGQVWCGMFTKDSANGLEFKLNM

Run BLAST on NCBI

transcript from alignment at scaffold_161:222659..226564+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049574 ID=TCONS_00049574|Name=TCONS_00049574|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_161:222659..226564+ (Clytia hemisphaerica)
ccggctttgggatggcaggatcctggatggtttccctaatgAAGCTAGAA
TTGCCAGCAAATcggtttttctcaaatttctggAGTTGTACTTGTCTATT
TGTCAtgaaatattgacaacaaagctctctttaaatataattttgcattt
tactttgatttttcaCAAAGATATATGAAATATTATTGATGTGAGAAAAC
ACCAACAATAAGGATACATTCATTAGACAAAATGGGTAAGAATTCACTTT
AACAAAGTATACaatataaaaattataattttttcaaggTTGTTTTTGTT
ATGAAACTAGTCTCGTATTTGTAACTTTGTAGATTTGTTCNCAATTATAA
GTTTTTCAAGGTTGTTTTTGTTATGAAACTAGTCTCGTATTTGTAACTTT
GTAGATTTGTTCTTTAAGTTTCCATTTTTGAATAggggaaaaaaatgaaa
aaaatacttacTGTAGAAAAACTCTCCAAACTATGAACTTACACTCCTCA
ATCAGAAAAGTCATTTTCGAACTGTAAGTTTTGATTTCTTGGGAAAatct
ttgttattgaaaaagcttctttcaaaaaactcaaactttttttgacAGAA
TCTGACAGAATtcctttaatttgaaaaaaaaactttaaagatgaatatga
aattaaattaaaatgattacAATGAATCAGTGATCAAAATGGCTAGATGT
GCATTATATATCCTTTattgaaaaagctgaaaaagctaattaaagtTCCA
GAAATtcagaaacatcaaaaacattcaaaccaaaaaagaaatcatatcac
AACTCAACTTGACAAGGAAGAATAAGATATTTTAATTTGTCTTAAGGCTT
GGAATAATCTTATCTATGATCAGATCAGGGggataatttattttatttaa
attatttgatactttcaaattaattgattttagtaaagaaaggaaaagga
aaacaaaGTGAAGAAGGTATGTAATGATAATTACTTGCTCAGATTATTTT
ACGcaagaattaattttcagctgaAATCAATTTAAATTGCCCTGAAAATG
CCAATTTCTCACAAATAGCATATTTAAAGAAGGTATTTTTAAGCCGAATA
TCTGAATTTAAAGATTGCCTGGGATTGATTCTGTGGGTTTTATTTCATCA
TAAAAAAGGCAAAAGTTTGCAAAAATGCAGaatttaaatcttaaattaAT
TCTTTAAGATATTGTTCTTACTaaaatcattctttttttatcattcCTTT
TGTTGGAGGAATTGCTCTCCATATGAAAACCTTTTGTTACCCTCTATAAC
CACTGTTGCTTTAAAATTTGTAAGAGGTctgaaattttataaaatgttCG
AATTAATAGAAGCCAGTTTCCTATTAAAAATGACTTTATTTTCAGCAATA
AAATCATATCCAAAAGTTTTGAGGTGTTTTAAAACATCCTAATTCTCCAA
TTCTCTTTTGTATCAGCAACATTTCTAGTTTAACATCctatattttattt
ttcgtCTAGACATAAAGATTCCACCTTCTgacgtttttatttttccaaat
gGTGATAAGTATGGTACACAACAAATTTTATgggattttatttttaaata
cattATCTGGAATTTATCTGAATGAAAATATGcgaaacaatatttgtatt
aTGATGTGAGGTCCTATATCCTGCTAGTTccagaaatatttttctttatg
gTGGGAACAATGACATACATGGAGAGTTTTCTCACCTTATTATCGTCACC
TCATTtaccttacacgtttttttataagaacattcaaaaattttgaagcc
tttggatgttcttaacttttttcagtttcaagcctaaaaattttcttaac
atgttcttaattttgccATTTGTGGgtgtttttgccaattttcaagaaat
ctggtgttttagagtccacaaagccttaaaatatccttaacttgttctta
atatcttggccatcgaagccttatattcctatagtttgttcttataaaaa
aacgtgtatctttcCTTATCCGATTTATCGTAATTACCAACCcaacttta
aacaaaaaaaaaaacgcttTGCATTATTAATTCGATATATATTTTCAGAG
GGGAATTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGG
AAGACATACAACACATGATGGAATTATTATGGAAGGCACTTGGGAGAACA
ATAAGTTAAATGGGAAAGGTACAACATTAGCCTACTATCATTTGAAAAGA
TTTGGTCGAGTTTGCCAGGAATGATGTCAAAATATCTGCATCTGTTGAAG
GGGGAAActggggagactggggagacttcagcctccccacttttgagaaa
atgagaactttttctcaaattcctagtgAATTTTATCCCATTCGACCCTc
tagcctccccacttttatggTTGTTCTGACGGGTATGCAGATTTACAGAT
CTCTTTTATTTAGGTCCAGGTCACAGAAGTACAAAATTATTGTTCGATTA
CTCAAAATATATTTCCCTTATTAAGTTTAGCTCCCAgcgttttttaaaaa
gagtagcccccaaacaagaaaaataattcaGGTCCCCCTATAAGTTCAGG
GGATGCGTTTTATGTGAACAATAAACGAACGTCATGTCCGGGATTTAGGA
GATAAcctattttgcttcattttctaTTTCTCTGCCAGGTAAGATTGTCC
ATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATAATATGATGCAT
GGTCAAGGAACCTATGTATTCACTGATAAATCGATCTATGAAGGCCAATT
CAATGAAAACAGGTATTTTTAGCAAGATCTTTTTAGTTTATTTCAgacat
tttatgtttttgaatGGATACTCAAAGTAGGGACAACATGTACCAGTCAT
GAAGATGGTTCAATTCAAGTCCCTTTGTTAAGTTCGCCCGCTTTTTTACT
ACAATGTGGAAACCATCCTCAAGACAATTGGTCTAATAACCTGACATCGT
TTACACATTGTAGTAAGCACACCTAAAGTGAAAGTAGTTTTGGTCGTAGC
TAGTTAGGCTTAATATTGATGAATACCTTGTTTGTGTAAAACTTGACAGA
TTCCCTCAGAAACCTGATATTGATAAATGCAATCTCCATTTCCTATACAG
GTTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTG
GTATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCAAACTGAACATG
TAAAATGAGGGGATAACAAATATTGCCCTGCTTGTTTTTTCTTCTATAAT
GTTTCACAGGTAATAGCAATCAATGGCAACAACGATGTGTTAAGATTAAT
AAAATCTATACCAGACCACCGCCTCTGACTGTTACCATTTGAATTAGGTC
TATTCATTTGGTTCTACAACCTGGCAGAAATATTCCAGGTGTAGAAATAT
TGTCTTATATCTGTTATTAGTAGTTGTTAGTTGTTCTGCTTGGATTATTG
CTGTAGGGTGTAATACTGTATTATGATATTGTTTGTCGGTTTGTTTTATG
ATGAGATGTATACAACTTTACGGAATGCAAAATGAGTTGAATTCAGGGCA
TATTTACCCGGGGCACTAGATTCAAAAACGTCCATACGTGCGgtccaaaa
ttaggcctttgaaatcggacccttacagtgcaggggAAATTTGGATATAT
TTTGCGTGTGAGACTAttttaggtgtacaaactttcgtgagcagaaactt
ttgcgatttttagcgaattttaccctttttcgcggaagtaataaaaattc
tttaaaaaggccgttcgcgaaaaattcttgacaaaatagaaattctgtaa
aacttctgaattaaaataaaatgtaaatttatggcactttttagcctgtt
gAAGCC

Coding sequence (CDS) from alignment at scaffold_161:222659..226564+

>TCONS_00049574 ID=TCONS_00049574|Name=TCONS_00049574|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_161:222659..226564+ (Clytia hemisphaerica)
ATGGtaaagaaaggaaaaggaaaacaaaGTGAAGAAGACATAAAGATTCC
ACCTTCTgacgtttttatttttccaaatgGTGATAAGTATGAGGGGAATT
TTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGGAAGACAT
ACAACACATGATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTT
AAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTG
ACGTTCTGGATAATATGATGCATGGTCAAGGAACCTATGTATTCACTGAT
AAATCGATCTATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGG
TCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAG
ACTCAGCCAATGGTTTAGAATTCAAACTGAACATGTAAATGGtaaagaaa
ggaaaaggaaaacaaaGTGAAGAAGACATAAAGATTCCACCTTCTgacgt
ttttatttttccaaatgGTGATAAGTATGAGGGGAATTTTTGCCAGTTGT
CTGACGAGACCATTTCACGATGTGGAACAGGAAGACATACAACACATGAT
GGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAAGG
TAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATA
ATATGATGCATGGTCAAGGAACCTATGTATTCACTGATAAATCGATCTAT
GAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACTGA
TCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAATG
GTTTAGAATTCAAACTGAACATGTAAATGGtaaagaaaggaaaaggaaaa
caaaGTGAAGAAGACATAAAGATTCCACCTTCTgacgtttttatttttcc
aaatgGTGATAAGTATGAGGGGAATTTTTGCCAGTTGTCTGACGAGACCA
TTTCACGATGTGGAACAGGAAGACATACAACACATGATGGAATTATTATG
GAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAAGGTAAGATTGTCCA
TCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATAATATGATGCATG
GTCAAGGAACCTATGTATTCACTGATAAATCGATCTATGAAGGCCAATTC
AATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCA
AGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCA
AACTGAACATGTAAATGGtaaagaaaggaaaaggaaaacaaaGTGAAGAA
GACATAAAGATTCCACCTTCTgacgtttttatttttccaaatgGTGATAA
GTATGAGGGGAATTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTG
GAACAGGAAGACATACAACACATGATGGAATTATTATGGAAGGCACTTGG
GAGAACAATAAGTTAAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGC
ATGTTATGAAGGTGACGTTCTGGATAATATGATGCATGGTCAAGGAACCT
ATGTATTCACTGATAAATCGATCTATGAAGGCCAATTCAATGAAAACAGG
TTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGG
TATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCAAACTGAACATGT
AAATGGtaaagaaaggaaaaggaaaacaaaGTGAAGAAGACATAAAGATT
CCACCTTCTgacgtttttatttttccaaatgGTGATAAGTATGAGGGGAA
TTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGGAAGAC
ATACAACACATGATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAG
TTAAATGGGAAAGGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGG
TGACGTTCTGGATAATATGATGCATGGTCAAGGAACCTATGTATTCACTG
ATAAATCGATCTATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAA
GGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAA
AGACTCAGCCAATGGTTTAGAATTCAAACTGAACATGTAAATGGtaaaga
aaggaaaaggaaaacaaaGTGAAGAAGACATAAAGATTCCACCTTCTgac
gtttttatttttccaaatgGTGATAAGTATGAGGGGAATTTTTGCCAGTT
GTCTGACGAGACCATTTCACGATGTGGAACAGGAAGACATACAACACATG
ATGGAATTATTATGGAAGGCACTTGGGAGAACAATAAGTTAAATGGGAAA
GGTAAGATTGTCCATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGA
TAATATGATGCATGGTCAAGGAACCTATGTATTCACTGATAAATCGATCT
ATGAAGGCCAATTCAATGAAAACAGGTTAGAAGGAGAAGGTCAGCTGACT
GATCCATCTGGTCAAGTGTGGTGTGGTATGTTTACAAAAGACTCAGCCAA
TGGTTTAGAATTCAAACTGAACATGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031440	XLOC_031440	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049574-protein	TCONS_00049574-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_161	supercontig	scaffold_161:222659..226564 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.2196	18.3395	23.2031	25.5971	83.8229	62.0601	39.3407	41.3174	30.2725	25.4529	23.3484	28.5082	9.81456	10.9182	4.12526	4.70066	8.9657	10.6899	6.70916	7.37523	9.42584	9.45147	11.4954	8.86773	51.0959	49.1449	7.55471	8.20976	2.60355	3.52174

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003409	MORN

Blast

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BLAST of TCONS_00049574 vs. Swiss-Prot (Human)
Match: MORN2 (MORN repeat-containing protein 2 OS=Homo sapiens GN=MORN2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.209e-19
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  430 LNGKGKIVHPSGACYEGDVLDNMMHGQGTYVFTDKSIYEGQFNENRLEGEGQLTDPSGQVWCGMFTKDSANGLEFKLNM 666
            +NG G++ H SGA YEG   DNM HG GTY F + + Y G FNENR+EGEG+ TD  G  W G F   +A  L+ KL+M
Sbjct:    1 MNGFGRLEHFSGAVYEGQFKDNMFHGLGTYTFPNGAKYTGNFNENRVEGEGEYTDIQGLEWSGNFHFTAAPDLKLKLHM 79

The following BLAST results are available for this feature:

BLAST of TCONS_00049574 vs. Swiss-Prot (Human)

BLAST of TCONS_00049574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MORN2	5.209e-19	51.90	MORN repeat-containing protein 2 OS=Homo sapiens G...	[more]

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TCONS_00049574 (transcript) - C. hemisphaerica