TCONS_00055429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055429
Unique NameTCONS_00055429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055429 ID=TCONS_00055429|Name=TCONS_00055429|organism=Clytia hemisphaerica|type=transcript|length=2475bp
CAAAAGAGAAAATTCCTCCTTTATTCCAAATTTCTCATGTGGAACACACA
TAACAACCTTTTCTAAAACCATTTCCTACTCAAATCACCAACCGAACACA
TGAAAATATCAATCCACAACAACTCTCAACAACAGCTTAGAGATTGGAAA
GATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATAC
TACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtgATCTCGTCAAGA
ATTAACCTTGTCGAAAAGGATTACTTTGGCTTGAAGTATACCAACCCATC
AACTGGTGTCAATACATGGCTTAATCTCAGGAATAAACTATCACAACAGC
TCACTGGGAGGGCTCCACATCGAATACAACTCACAGTGAAATATTTTGTT
AATGTTCAAGAGCTTCAACAACAAATTTCAAgGGACATTTTTTATTCTAC
AATCTACCAACAACTCTTAAATGAAGATTTATTGGACAAAATTGGTCAAC
CTGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGAAATATGGAGAT
TTCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTACCCTCAATCAA
ATGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACATCTCAACCTTG
ATATGGTGACCTCATCTGAAGCTAAAATccaattcatcaaaatttttggg
gACCTTCCTAACTATGGAATGGATATTTTCCATGTGAATTCAGTAGCAGA
ACATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGGCCTCAGAATCT
ACAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGAATTTAGTCCAA
TTCATTCCTTATGATGAAATTTCAACTGTATCATATAAAGGCAAGAAGTT
CACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCATTCCACTTTTC
TTTTGCGAGAGAGGCAGATTATACCTTTTTGATGTTGTTCGAACAAGACG
TCAAGCATACGATCATGCCTGGTCAATATTGAATGCCCCTGATAAGAAAC
GTCAATCAGCATTTTATCACAGTGACCGTCATATCAATCGAAAAAGTGTA
TATAGTTTGAGTAAAGTTGACGAGGCTCCAGAGACTCACAGTAGAAGACC
TCAGTCTCAAAGCTTTGAATCTATAACTTTCACGAAAGACCACAAAAAGA
AAGAAGGTAGGCTGATTTCTGCAGATGCTAACGTTAAACAATTGTCTTTG
GAGGAATTACGTGAAACTGTTGAAAATCTGTTGGAGAACAAAGTATGCCA
AGTTTGCATGGATTCTGAAGTCTCCACTGCGTTTTGTCCTTGTGGCCATG
TTGTATGTTGTGTGGATTGTGCAACTTTGTGTCGTGAATGTCCTCTATGT
CGGATGCAAATCACTTATGCCCAAagagttttcttttcaaatgatTGAAA
GCTACAGAAATTTATTGTGTTCATTCTTATTGTTAttgtctttataaaaa
aaaaactaattctaGAAGCTTGTTGTAAATATGAAGTAGTGTAAATTTAT
TATTTGTAAagtgttaaaatttttaataaaaatcctTAGTAGGGTATCCA
GGTTTTAGCTGGGACCAATTTATTAAGATTCATTTTTAGTAAATATCGTG
TTTTTTTAGTAATTTAACTGAAAgtagacagacagacagacagaaagACA
GAGATAgagatgaaatttatttttcaaatttcatcagCTTTTTTTAGCTA
ATGAATTATGTATGTGTATATTGAAAATGTTGGTCTATTTGATCGTAAAT
TTCAGGATTGGATTCTTGAATGTTCTGTCAGTGTCGTCTTTGAAACttaa
tgaaagatttatgaGCTTCAACACatgtagatttttttctctttttttcc
gaTTCAGCTGAATTCAGTCGATACGAATTTATTTCTCAATTTGAGAAATA
TAGCTGACTctcataaaaatttataaaatgacGTATTTCGGgcgttgttt
ttcattttcaaagtagaTTTTGTTGGGTTTTTTATACTTAGATTctgaaa
tttcccttttttcaaaatcaccCTTCTATTTCTAGTGGCctctttatctt
tttttatggTCACTTAAgttcatagccctttttttgCAACagtagaaata
attttttcattttctcttattttgaaaatttgtttttcccataaaattGT
ACTTAGATAAATATTATTTCATACTTTTGCTTTTTTCCTCATTGTTACTC
TCAAGTGCCTTAAAAGCTCCGGTTTTGCGATATTTATTAACTCATCTGAT
TGGAGAAACTTTCACCTGTCAAAAGTGCATTTAAATAATTTGACTTCCTT
CTTAGAATTTTGTTCTATCAAGGGAAAAAATACAGGGTATTGATGAAAGA
CACTTGAGAGAATTCTTTTTCCTGCGTttcaaaatatcatattttcaaaa
accgAAAAATAAAATCGAAACATTA
Run BLAST on NCBI

protein sequence of TCONS_00055429-protein

>TCONS_00055429-protein ID=TCONS_00055429-protein|Name=TCONS_00055429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MWCFVSEPNGTIHELILPKGSYGIDCLDMISSRINLVEKDYFGLKYTNPS
TGVNTWLNLRNKLSQQLTGRAPHRIQLTVKYFVNVQELQQQISRDIFYST
IYQQLLNEDLLDKIGQPELNKVIALIAQVKYGDFNAESVPEYSKLLPSIK
WSNELQKSVETEHLNLDMVTSSEAKIQFIKIFGDLPNYGMDIFHVNSVAE
HPDQLILGVRHDGLRIYKDKSILSETEQENLVQFIPYDEISTVSYKGKKF
TIVHGSNQDDHVHSTFLLRERQIIPF
Run BLAST on NCBI

transcript from alignment at scaffold_253:806574..810251+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055429 ID=TCONS_00055429|Name=TCONS_00055429|organism=Clytia hemisphaerica|type=transcript|length=3678bp|location=Sequence derived from alignment at scaffold_253:806574..810251+ (Clytia hemisphaerica)
CAAAAGAGAAAATTCCTCCTTTATTCCAAATTTCTCATGTGGAACACACA
TAACAACCTTTTCTAAAACCATTTCCTACTCAAATCACCAACCGAACACA
TGAAAATATCAATCCACAACAACTCTCAACAACAGCTTAGAGATTGGAAA
GATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATAC
TACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtggtaagaaatatt
ttttcatagttTGTTGTTGTTATAACTTTATGATTCTGACCTTCTAATAT
TTTTGTTTGTGTTGTGTCTTGCTGTGAAAATCTCATAAGCAATGCATCTA
ATTTCTTTTTATCAGATCTCGTCAAGAATTAACCTTGTCGAAAAGGATTA
CTTTGGCTTGAAGTATACCAACCCATCAACTGGTGTCAATACATGGCTTA
ATCTCAGGAATAAACTATCACAACAGCTCACTGGGAGGGCTCCACATCGA
ATACAACTCACAGTGAAATATTTTGTTAATGTTCAAGAGCTTCAACAACA
AATTTCAAggtatttttcttgaaaattagaATTGGTAGTCCTATATCCCT
TTTCTTGTGAGTGTTAGAATTGAAGTGTTGCTTTTGTGTTGACTTTTTGT
GCCTGATCTGATTCgatattttttcttaaataaattCCTGCTTTAAAAGA
GCGGTTGTTGTTTGACAAGACTATTAAAACCATTTGTGACAATACATAcc
ttaagttggtctaatatcgacatccctcttctaatttcaacatccttctt
tagagataggaacaataggaaggtcagaatcactgatggactcctcaact
gattgcttagcaaaaaaaaataagtttcagcgattccaaccttcctatca
ttcatatctttaaagaaggatgtcgaaattagaaaatggatgtcgacatt
agaccaacttacggtacaaaACTAGTCATTtctattttccttttcaaaaa
tcatcaaaccaGAAAACTGGGAATTCTTATtcaaacctgaacataataac
aAAAGAATTCCGAACTGATGTAATCTTAATCTTATTTTTCAGGGACATTT
TTTATTCTACAATCTACCAACAACTCTTAAATGAAGATTTATTGGACAAA
ATTGGTCAACCTGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGAA
ATATGGAGATTTCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTAC
CCTCAATCAAATGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACAT
CTCAACCTTGATATGGTGACCTCATCTGAAGCTAAAATccaattcatcaa
aatttttggggACCTTCCTAACTATGGAATGGATATTTTCCATGTGAATT
CAGTAGCAGAACATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGGC
CTCAGAATCTACAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGAA
TTTAGTCCAATTGTAagtattttaaattaaaaacttGAATAGTTAATTTT
GACATTTAAACgtcttttaaaattcaaaattatgaATCGCCTTTTGGTGC
CTTGAACTCAGGGAACTCAGGGAActcatttttgtcatttttactTTGAC
TACACCAGAAAAATTAGAACCTGTGAATTACAAATTtggttgtttttctt
caaaaaacctgaaaaatccttcttaggaaaatgaaagaaatgtgtcAAAC
AGTGTCAAATAGTGCAAAACTGCGGAAATTAATTTCCACCAAATGCGAac
gtttggaattttttttgaccaagaaaattagttcccttttaGGTACATGA
CAAATTTTACAAGGTTCTCAGAAGAATTTTTCGAATAATTAGTTTTATTT
TCTTACTTTCAGCATTCCTTATGATGAAATTTCAACTGTATCATATAAAG
GCAAGAAGTTCACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCAT
TCCACTTTTCTTTTGCGTAAGAATCAACAAGCAATCAATCTTTTCAGGAC
ATTTACAGAGTTTCATTCATTCTATCAATGCAACAGTGTTAAAAAATCGG
TAATTGAGAAATGTTCCAGGACCTCAGTAGCAAGAATCCTTTCGGTCTTT
TCACGTCAGGAGAGAGGCAGATTATACCTTTTTGATGTTGTTCGAACAAG
ACGTCAAGCATACGATCATGCCTGGTCAATATTGAATGCCCCTGATAAGA
AACGTCAATCAGCATTTTATCACAGTGACCGTCATATCAATCGAAAAAGT
GTATATAGTTTGAGTAAAGTTGACGAGGCTCCAGAGACTCACAGTAGAAG
ACCTCAGTCTCAAAGCTTTGAATCTATAACTTTCACGAAAGACCACAAAA
AGAAAGAAGGTAGGCTGATTTCTGCAGATGCTAACGTTAAACAATTGTCT
TTGGAGGAATTACGTGAAACTGTTGAAAATCTGTTGGAGAACAAAGTATG
CCAAGTTTGCATGGATTCTGAAGTCTCCACTGCGTTTTGTCCTTGTGGCC
ATGTTGTATGTTGTGTGGATTGTGCAACTTTGTGTCGTGAATGTCCTCTA
TGTCGGATGCAAATCACTTATGCCCAAagagttttcttttcaaatgatTG
AAAGCTACAGAAATTTATTGTGTTCATTCTTATTGTTAttgtctttataa
aaaaaaaactaattctaGAAGCTTGTTGTAAATATGAAGTAGTGTAAATT
TATTATTTGTAAagtgttaaaatttttaataaaaatcctTAGTAGGGTAT
CCAGGTTTTAGCTGGGACCAATTTATTAAGATTCATTTTTAGTAAATATC
GTGTTTTTTTAGTAATTTAACTGAAAgtagacagacagacagacagaaag
ACAGAGATAgagatgaaatttatttttcaaatttcatcagCTTTTTTTAG
CTAATGAATTATGTATGTGTATATTGAAAATGTTGGTCTATTTGATCGTA
AATTTCAGGATTGGATTCTTGAATGTTCTGTCAGTGTCGTCTTTGAAACt
taatgaaagatttatgaGCTTCAACACatgtagatttttttctctttttt
tccgaTTCAGCTGAATTCAGTCGATACGAATTTATTTCTCAATTTGAGAA
ATATAGCTGACTctcataaaaatttataaaatgacGTATTTCGGgcgttg
tttttcattttcaaagtagaTTTTGTTGGGTTTTTTATACTTAGATTctg
aaatttcccttttttcaaaatcaccCTTCTATTTCTAGTGGCctctttat
ctttttttatggTCACTTAAgttcatagccctttttttgCAACagtagaa
ataattttttcattttctcttattttgaaaatttgtttttcccataaaat
tGTACTTAGATAAATATTATTTCATACTTTTGCTTTTTTCCTCATTGTTA
CTCTCAAGTGCCTTAAAAGCTCCGGTTTTGCGATATTTATTAACTCATCT
GATTGGAGAAACTTTCACCTGTCAAAAGTGCATTTAAATAATTTGACTTC
CTTCTTAGAATTTTGTTCTATCAAGGGAAAAAATACAGGGTATTGATGAA
AGACACTTGAGAGAATTCTTTTTCCTGCGTttcaaaatatcatattttca
aaaaccgAAAAATAAAATCGAAACATTA

Coding sequence (CDS) from alignment at scaffold_253:806574..810251+

>TCONS_00055429 ID=TCONS_00055429|Name=TCONS_00055429|organism=Clytia hemisphaerica|type=CDS|length=4155bp|location=Sequence derived from alignment at scaffold_253:806574..810251+ (Clytia hemisphaerica)
ATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATACT
ACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtgATCTCGTCAAGAA
TTAACCTTGTCGAAAAGGATTACTTTGGCTTGAAGTATACCAACCCATCA
ACTGGTGTCAATACATGGCTTAATCTCAGGAATAAACTATCACAACAGCT
CACTGGGAGGGCTCCACATCGAATACAACTCACAGTGAAATATTTTGTTA
ATGTTCAAGAGCTTCAACAACAAATTTCAAgGGACATTTTTTATTCTACA
ATCTACCAACAACTCTTAAATGAAGATTTATTGGACAAAATTGGTCAACC
TGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGAAATATGGAGATT
TCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTACCCTCAATCAAA
TGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACATCTCAACCTTGA
TATGGTGACCTCATCTGAAGCTAAAATccaattcatcaaaatttttgggg
ACCTTCCTAACTATGGAATGGATATTTTCCATGTGAATTCAGTAGCAGAA
CATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGGCCTCAGAATCTA
CAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGAATTTAGTCCAAT
TCATTCCTTATGATGAAATTTCAACTGTATCATATAAAGGCAAGAAGTTC
ACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCATTCCACTTTTCT
TTTGCGAGAGAGGCAGATTATACCTTTTTGAATGTGGTGCTTCGTTTCAG
AGCCCAATGGGACAATCCACGAGCTTATACTACCTAAGGGAAGCTATGGG
ATTGATTGTCTTGATAtgATCTCGTCAAGAATTAACCTTGTCGAAAAGGA
TTACTTTGGCTTGAAGTATACCAACCCATCAACTGGTGTCAATACATGGC
TTAATCTCAGGAATAAACTATCACAACAGCTCACTGGGAGGGCTCCACAT
CGAATACAACTCACAGTGAAATATTTTGTTAATGTTCAAGAGCTTCAACA
ACAAATTTCAAgGGACATTTTTTATTCTACAATCTACCAACAACTCTTAA
ATGAAGATTTATTGGACAAAATTGGTCAACCTGAACTAAACAAAGTAATA
GCTCTCATTGCACAAGTGAAATATGGAGATTTCAATGCAGAATCAGTGCC
AGAATACTCAAAACTGTTACCCTCAATCAAATGGTCTAATGAATTACAAA
AAAGCGTTGAAACTGAACATCTCAACCTTGATATGGTGACCTCATCTGAA
GCTAAAATccaattcatcaaaatttttggggACCTTCCTAACTATGGAAT
GGATATTTTCCATGTGAATTCAGTAGCAGAACATCCAGATCAACTTATTC
TTGGTGTTCGTCATGATGGCCTCAGAATCTACAAAGATAAATCAATTCTA
TCAGAAACTGAGCAAGAGAATTTAGTCCAATTCATTCCTTATGATGAAAT
TTCAACTGTATCATATAAAGGCAAGAAGTTCACTATTGTGCATGGAAGTA
ACCAAGACGATCATGTTCATTCCACTTTTCTTTTGCGAGAGAGGCAGATT
ATACCTTTTTGAATGTGGTGCTTCGTTTCAGAGCCCAATGGGACAATCCA
CGAGCTTATACTACCTAAGGGAAGCTATGGGATTGATTGTCTTGATAtgA
TCTCGTCAAGAATTAACCTTGTCGAAAAGGATTACTTTGGCTTGAAGTAT
ACCAACCCATCAACTGGTGTCAATACATGGCTTAATCTCAGGAATAAACT
ATCACAACAGCTCACTGGGAGGGCTCCACATCGAATACAACTCACAGTGA
AATATTTTGTTAATGTTCAAGAGCTTCAACAACAAATTTCAAgGGACATT
TTTTATTCTACAATCTACCAACAACTCTTAAATGAAGATTTATTGGACAA
AATTGGTCAACCTGAACTAAACAAAGTAATAGCTCTCATTGCACAAGTGA
AATATGGAGATTTCAATGCAGAATCAGTGCCAGAATACTCAAAACTGTTA
CCCTCAATCAAATGGTCTAATGAATTACAAAAAAGCGTTGAAACTGAACA
TCTCAACCTTGATATGGTGACCTCATCTGAAGCTAAAATccaattcatca
aaatttttggggACCTTCCTAACTATGGAATGGATATTTTCCATGTGAAT
TCAGTAGCAGAACATCCAGATCAACTTATTCTTGGTGTTCGTCATGATGG
CCTCAGAATCTACAAAGATAAATCAATTCTATCAGAAACTGAGCAAGAGA
ATTTAGTCCAATTCATTCCTTATGATGAAATTTCAACTGTATCATATAAA
GGCAAGAAGTTCACTATTGTGCATGGAAGTAACCAAGACGATCATGTTCA
TTCCACTTTTCTTTTGCGAGAGAGGCAGATTATACCTTTTTGAATGTGGT
GCTTCGTTTCAGAGCCCAATGGGACAATCCACGAGCTTATACTACCTAAG
GGAAGCTATGGGATTGATTGTCTTGATAtgATCTCGTCAAGAATTAACCT
TGTCGAAAAGGATTACTTTGGCTTGAAGTATACCAACCCATCAACTGGTG
TCAATACATGGCTTAATCTCAGGAATAAACTATCACAACAGCTCACTGGG
AGGGCTCCACATCGAATACAACTCACAGTGAAATATTTTGTTAATGTTCA
AGAGCTTCAACAACAAATTTCAAgGGACATTTTTTATTCTACAATCTACC
AACAACTCTTAAATGAAGATTTATTGGACAAAATTGGTCAACCTGAACTA
AACAAAGTAATAGCTCTCATTGCACAAGTGAAATATGGAGATTTCAATGC
AGAATCAGTGCCAGAATACTCAAAACTGTTACCCTCAATCAAATGGTCTA
ATGAATTACAAAAAAGCGTTGAAACTGAACATCTCAACCTTGATATGGTG
ACCTCATCTGAAGCTAAAATccaattcatcaaaatttttggggACCTTCC
TAACTATGGAATGGATATTTTCCATGTGAATTCAGTAGCAGAACATCCAG
ATCAACTTATTCTTGGTGTTCGTCATGATGGCCTCAGAATCTACAAAGAT
AAATCAATTCTATCAGAAACTGAGCAAGAGAATTTAGTCCAATTCATTCC
TTATGATGAAATTTCAACTGTATCATATAAAGGCAAGAAGTTCACTATTG
TGCATGGAAGTAACCAAGACGATCATGTTCATTCCACTTTTCTTTTGCGA
GAGAGGCAGATTATACCTTTTTGAATGTGGTGCTTCGTTTCAGAGCCCAA
TGGGACAATCCACGAGCTTATACTACCTAAGGGAAGCTATGGGATTGATT
GTCTTGATAtgATCTCGTCAAGAATTAACCTTGTCGAAAAGGATTACTTT
GGCTTGAAGTATACCAACCCATCAACTGGTGTCAATACATGGCTTAATCT
CAGGAATAAACTATCACAACAGCTCACTGGGAGGGCTCCACATCGAATAC
AACTCACAGTGAAATATTTTGTTAATGTTCAAGAGCTTCAACAACAAATT
TCAAgGGACATTTTTTATTCTACAATCTACCAACAACTCTTAAATGAAGA
TTTATTGGACAAAATTGGTCAACCTGAACTAAACAAAGTAATAGCTCTCA
TTGCACAAGTGAAATATGGAGATTTCAATGCAGAATCAGTGCCAGAATAC
TCAAAACTGTTACCCTCAATCAAATGGTCTAATGAATTACAAAAAAGCGT
TGAAACTGAACATCTCAACCTTGATATGGTGACCTCATCTGAAGCTAAAA
TccaattcatcaaaatttttggggACCTTCCTAACTATGGAATGGATATT
TTCCATGTGAATTCAGTAGCAGAACATCCAGATCAACTTATTCTTGGTGT
TCGTCATGATGGCCTCAGAATCTACAAAGATAAATCAATTCTATCAGAAA
CTGAGCAAGAGAATTTAGTCCAATTCATTCCTTATGATGAAATTTCAACT
GTATCATATAAAGGCAAGAAGTTCACTATTGTGCATGGAAGTAACCAAGA
CGATCATGTTCATTCCACTTTTCTTTTGCGAGAGAGGCAGATTATACCTT
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034881XLOC_034881Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055429-exon-scaffold_253-1491911889:806574..806811TCONS_00055429-exon-scaffold_253-1491911889:806574..806811Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1510915933:806574..806811TCONS_00055429-exon-scaffold_253-1510915933:806574..806811Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1575043694:806574..806811TCONS_00055429-exon-scaffold_253-1575043694:806574..806811Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1491911889:806939..807132TCONS_00055429-exon-scaffold_253-1491911889:806939..807132Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1510915933:806939..807132TCONS_00055429-exon-scaffold_253-1510915933:806939..807132Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1575043694:806939..807132TCONS_00055429-exon-scaffold_253-1575043694:806939..807132Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1491911889:807666..808085TCONS_00055429-exon-scaffold_253-1491911889:807666..808085Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1510915933:807666..808085TCONS_00055429-exon-scaffold_253-1510915933:807666..808085Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1575043694:807666..808085TCONS_00055429-exon-scaffold_253-1575043694:807666..808085Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1491911889:808486..808589TCONS_00055429-exon-scaffold_253-1491911889:808486..808589Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1510915933:808486..808589TCONS_00055429-exon-scaffold_253-1510915933:808486..808589Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1575043694:808486..808589TCONS_00055429-exon-scaffold_253-1575043694:808486..808589Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1491911889:808733..810251TCONS_00055429-exon-scaffold_253-1491911889:808733..810251Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1510915933:808733..810251TCONS_00055429-exon-scaffold_253-1510915933:808733..810251Clytia hemisphaericaexon
TCONS_00055429-exon-scaffold_253-1575043694:808733..810251TCONS_00055429-exon-scaffold_253-1575043694:808733..810251Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055429-proteinTCONS_00055429-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:806574..810251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.408133	0.263181	0	0.519965	1.09873e-05	0.272489	0.279498	0.213208	0	0.315363	0	0	0	0	0	1.85709	0	0	0.951985	0	3.0314e-07	0.0163212	0	0.70715
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019749Band_41_domain
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR011993PH_dom-like
IPR019748FERM_central
IPR018979FERM_N
IPR018980FERM_PH-like_C
IPR000299FERM_domain
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
Blast
[Close]
BLAST of TCONS_00055429 vs. Swiss-Prot (Human)
Match: MYLIP (E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.104e-33
Identity = 76/220 (34.55%), Postives = 128/220 (58.18%), Query Frame = 2 
Query:  152 MWCFVSEPNGTIHELILPKGSYGIDCLDMISSRINLVEKDYFGLKYTNPSTGVNTWLNLRNKLSQQLTGRAPHRIQLTVKYFVNVQELQQQISRDIFYSTIYQQLLNEDLLDKIGQP-ELNKVIALIAQVKYGDFNAESVPEYSKLLPSIKWSNELQKSVETEHLNLDMVTSSEAKIQFIKIFGDLPNYGMDIFHVNSVAEHPDQLILGVRHDGLRIYKD 808
            M C+V+ P+  + E+ +   + G DCL+ +  R+ ++E DYFGL++T  S G + WLNLRN++SQQ+ G AP+R++L VK+FV    + Q+ +R IF+  I + LL   LL    Q  EL+   AL+AQ K+GD+N  +     + L + + S+    S+  +H  L+  + + A+ Q ++I   + NYG++   V        +L++GV  +G+ I KD
Sbjct:    1 MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTG-SKGESLWLNLRNRISQQMDGLAPYRLKLRVKFFVEPHLILQEQTRHIFFLHIKEALLAGHLLCSPEQAVELS---ALLAQTKFGDYNQNTAKYNYEELCAKELSSATLNSIVAKHKELEGTSQASAEYQVLQIVSAMENYGIEWHSVRD--SEGQKLLIGVGPEGISICKD 214
The following BLAST results are available for this feature:
BLAST of TCONS_00055429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYLIP8.104e-3334.55E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens ... [more]
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